Wall clock time and date at job start Mon Mar 30 2020 06:52:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99720 * 2 1 4 4 H 1.48503 * 109.46839 * 270.00250 * 3 2 1 5 5 H 1.48494 * 109.47256 * 29.99911 * 3 2 1 6 6 H 1.48498 * 109.47056 * 150.00475 * 3 2 1 7 7 C 1.37878 * 120.00152 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00063 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99777 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.47090 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47090 * 179.97438 * 10 9 7 12 12 O 1.20829 * 120.00300 * 359.97438 * 11 10 9 13 13 O 1.34264 * 119.99791 * 180.02562 * 11 10 9 14 14 C 1.35930 * 117.00140 * 185.77257 * 13 11 10 15 15 C 1.38763 * 120.17362 * 248.99681 * 14 13 11 16 16 C 1.37829 * 119.71392 * 180.09873 * 15 14 13 17 17 C 1.38965 * 120.62325 * 359.97438 * 16 15 14 18 18 C 1.37713 * 119.76697 * 359.74502 * 17 16 15 19 19 C 1.38418 * 120.17383 * 68.97326 * 14 13 11 20 20 C 1.50638 * 122.55421 * 180.73668 * 18 17 16 21 21 C 1.52724 * 110.59915 * 341.99889 * 20 18 17 22 22 C 1.53314 * 108.39371 * 51.14200 * 21 20 18 23 23 C 1.50652 * 117.69947 * 179.42011 * 17 16 15 24 24 H 0.97003 * 120.00194 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47267 * 59.99903 * 9 7 2 26 26 H 1.09001 * 109.47127 * 300.00119 * 9 7 2 27 27 H 1.09002 * 109.47013 * 59.99909 * 10 9 7 28 28 H 1.09001 * 109.47365 * 300.00135 * 10 9 7 29 29 H 1.07999 * 120.14459 * 0.12282 * 15 14 13 30 30 H 1.07999 * 119.69121 * 179.97438 * 16 15 14 31 31 H 1.08005 * 119.75034 * 0.05077 * 19 14 13 32 32 H 1.09001 * 109.25288 * 102.28681 * 20 18 17 33 33 H 1.09002 * 109.25169 * 221.71138 * 20 18 17 34 34 H 1.09004 * 109.68266 * 170.86869 * 21 20 18 35 35 H 1.09003 * 109.67836 * 291.41633 * 21 20 18 36 36 H 1.08998 * 109.68422 * 49.88781 * 22 21 20 37 37 H 1.08999 * 109.68235 * 170.40098 * 22 21 20 38 38 H 1.08996 * 109.25014 * 282.57551 * 23 17 16 39 39 H 1.08990 * 109.25421 * 42.01010 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 6 4.0216 -2.6364 -0.0010 11 6 5.5286 -2.6363 -0.0022 12 8 6.1327 -1.5899 -0.0036 13 8 6.2000 -3.7991 -0.0028 14 6 7.5522 -3.7310 0.1179 15 6 8.3660 -4.0685 -0.9542 16 6 9.7360 -3.9980 -0.8207 17 6 10.3104 -3.5915 0.3776 18 6 9.5047 -3.2504 1.4411 19 6 8.1246 -3.3241 1.3107 20 6 10.0597 -2.7862 2.7623 21 6 11.5321 -3.1706 2.8915 22 6 12.2688 -2.6936 1.6344 23 6 11.8144 -3.5512 0.4550 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.6803 0.8888 26 1 3.8745 -0.6799 -0.8911 27 1 3.6580 -3.1505 -0.8907 28 1 3.6587 -3.1501 0.8892 29 1 7.9278 -4.3847 -1.8892 30 1 10.3690 -4.2612 -1.6551 31 1 7.4926 -3.0615 2.1463 32 1 9.9638 -1.7026 2.8316 33 1 9.4951 -3.2488 3.5718 34 1 11.9607 -2.6918 3.7720 35 1 11.6223 -4.2532 2.9814 36 1 12.0280 -1.6481 1.4423 37 1 13.3441 -2.8026 1.7755 38 1 12.1951 -4.5648 0.5801 39 1 12.2107 -3.1304 -0.4690 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000813077204.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:14 Heat of formation + Delta-G solvation = -97.832648 kcal Electronic energy + Delta-G solvation = -20303.503760 eV Core-core repulsion = 17174.380466 eV Total energy + Delta-G solvation = -3129.123294 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.136 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.44080 -40.67717 -38.46375 -36.37870 -35.68676 -33.60847 -33.42211 -31.00657 -29.76584 -28.42322 -25.24237 -24.24873 -23.48272 -23.06444 -21.64967 -20.40376 -19.43469 -18.75255 -17.96778 -17.63561 -16.80243 -16.41121 -16.29563 -15.70141 -15.43898 -15.06497 -14.76208 -14.72755 -14.64481 -14.45221 -13.76386 -13.61480 -13.46799 -13.17374 -13.13488 -12.95110 -12.55890 -12.29315 -12.07185 -11.96902 -11.85326 -11.75830 -11.60173 -11.46899 -11.37613 -11.27489 -10.81570 -9.85295 -9.46297 -8.34407 -6.38904 -0.00871 0.25432 1.04013 1.32143 1.34306 1.47733 1.70669 2.32001 2.64717 3.00806 3.56480 3.68712 3.72294 3.88336 4.02975 4.10711 4.17036 4.20980 4.26005 4.31843 4.45984 4.59708 4.60927 4.69224 4.82256 4.87515 4.92433 4.99731 5.06929 5.10742 5.13931 5.21606 5.29481 5.30795 5.37122 5.41929 5.45396 5.54600 5.61116 5.91096 6.18435 6.66427 6.77177 7.26302 8.81112 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.030027 B = 0.003556 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.256092 B = 7872.359310 C = 8287.762666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.016 3.984 3 Si 0.938 3.062 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.260 1.260 7 C -0.532 4.532 8 H 0.053 0.947 9 C 0.003 3.997 10 C -0.087 4.087 11 C 0.464 3.536 12 O -0.524 6.524 13 O -0.296 6.296 14 C 0.051 3.949 15 C -0.133 4.133 16 C -0.103 4.103 17 C -0.082 4.082 18 C -0.070 4.070 19 C -0.145 4.145 20 C -0.085 4.085 21 C -0.115 4.115 22 C -0.122 4.122 23 C -0.078 4.078 24 H 0.269 0.731 25 H 0.017 0.983 26 H 0.016 0.984 27 H 0.119 0.881 28 H 0.118 0.882 29 H 0.142 0.858 30 H 0.162 0.838 31 H 0.115 0.885 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.056 0.944 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.762 -9.452 2.528 29.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.182 4.182 3 Si 0.762 3.238 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.570 4.570 8 H 0.071 0.929 9 C -0.035 4.035 10 C -0.125 4.125 11 C 0.310 3.690 12 O -0.411 6.411 13 O -0.212 6.212 14 C 0.010 3.990 15 C -0.151 4.151 16 C -0.121 4.121 17 C -0.082 4.082 18 C -0.070 4.070 19 C -0.164 4.164 20 C -0.122 4.122 21 C -0.152 4.152 22 C -0.159 4.159 23 C -0.114 4.114 24 H 0.078 0.922 25 H 0.035 0.965 26 H 0.035 0.965 27 H 0.137 0.863 28 H 0.136 0.864 29 H 0.160 0.840 30 H 0.179 0.821 31 H 0.133 0.867 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.109 0.891 38 H 0.112 0.888 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 27.802 -9.018 2.515 29.336 hybrid contribution -0.718 0.884 -0.030 1.139 sum 27.084 -8.133 2.484 28.388 Atomic orbital electron populations 1.70014 1.07809 1.28266 1.52002 1.25780 0.95499 1.02835 0.94079 0.85838 0.79254 0.79445 0.79259 1.19225 1.20240 1.18451 1.21303 0.90686 0.94021 1.50984 0.92851 1.19329 0.94562 0.92443 0.97148 1.21398 0.83162 1.01047 1.06860 1.24935 0.92449 0.80851 0.70761 1.90632 1.70999 1.33644 1.45838 1.84669 1.18499 1.34868 1.83158 1.18893 0.80914 1.03868 0.95313 1.21293 0.94396 1.01883 0.97547 1.21404 0.93386 0.98819 0.98504 1.20139 0.97560 0.97950 0.92509 1.19766 0.91247 0.98717 0.97302 1.21446 0.96395 1.01539 0.97013 1.20567 0.97845 1.01162 0.92581 1.21550 0.92899 1.01893 0.98889 1.21590 1.01007 0.99209 0.94091 1.20570 0.88417 1.02064 1.00390 0.92206 0.96465 0.96544 0.86311 0.86389 0.84016 0.82054 0.86708 0.90808 0.90369 0.89869 0.91050 0.92473 0.89139 0.88755 0.89227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.38 13.96 21.45 0.30 -58.08 16 2 C 0.02 0.96 5.47 84.65 0.46 1.42 16 3 Si 0.94 45.86 27.47 68.60 1.88 47.74 16 4 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 5 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 6 H -0.26 -12.56 6.54 99.48 0.65 -11.91 16 7 C -0.53 -30.31 9.66 25.60 0.25 -30.06 16 8 H 0.05 3.20 7.99 -2.91 -0.02 3.18 16 9 C 0.00 0.14 3.33 29.85 0.10 0.23 16 10 C -0.09 -3.40 5.75 29.85 0.17 -3.23 16 11 C 0.46 17.94 7.73 71.23 0.55 18.49 16 12 O -0.52 -23.35 15.40 21.95 0.34 -23.02 16 13 O -0.30 -10.23 10.05 4.48 0.05 -10.19 16 14 C 0.05 1.62 5.27 22.44 0.12 1.74 16 15 C -0.13 -3.45 9.99 22.30 0.22 -3.23 16 16 C -0.10 -2.10 9.60 22.35 0.21 -1.88 16 17 C -0.08 -1.64 5.74 -19.83 -0.11 -1.75 16 18 C -0.07 -1.68 5.74 -19.87 -0.11 -1.79 16 19 C -0.15 -4.35 8.89 22.45 0.20 -4.15 16 20 C -0.08 -1.56 5.67 29.74 0.17 -1.39 16 21 C -0.11 -1.45 5.98 30.61 0.18 -1.26 16 22 C -0.12 -1.40 5.98 30.61 0.18 -1.22 16 23 C -0.08 -0.97 5.67 29.75 0.17 -0.80 16 24 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 25 H 0.02 0.86 7.16 -2.39 -0.02 0.84 16 26 H 0.02 0.81 7.53 -2.39 -0.02 0.79 16 27 H 0.12 4.20 8.14 -2.39 -0.02 4.18 16 28 H 0.12 4.19 8.14 -2.39 -0.02 4.17 16 29 H 0.14 3.21 8.06 -2.91 -0.02 3.19 16 30 H 0.16 2.10 8.05 -2.91 -0.02 2.08 16 31 H 0.11 3.51 8.05 -2.91 -0.02 3.48 16 32 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.08 1.37 8.12 -2.39 -0.02 1.35 16 34 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.07 0.84 8.10 -2.39 -0.02 0.82 16 36 H 0.06 0.78 8.10 -2.39 -0.02 0.77 16 37 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.09 0.90 8.12 -2.39 -0.02 0.88 16 Total: -1.00 -70.61 324.53 6.30 -64.31 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: 0.97 Total: 8.12 kcal Atomic # 6 Polarization: -31.64 SS G_CDS: 2.76 Total: -28.88 kcal Atomic # 7 Polarization: -58.38 SS G_CDS: 0.30 Total: -58.08 kcal Atomic # 8 Polarization: -33.59 SS G_CDS: 0.38 Total: -33.20 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 1.88 Total: 47.74 kcal Total: -70.61 6.30 -64.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000813077204.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.524 kcal (2) G-P(sol) polarization free energy of solvation -70.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds