Wall clock time and date at job start Mon Mar 30 2020 07:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34800 * 120.00188 * 2 1 4 4 C 1.47212 * 119.99822 * 168.64903 * 3 2 1 5 5 C 1.40263 * 120.58490 * 132.40028 * 4 3 2 6 6 C 1.38284 * 118.26917 * 179.97438 * 5 4 3 7 7 C 1.38395 * 119.33315 * 359.97438 * 6 5 4 8 8 N 1.31944 * 121.13668 * 0.02562 * 7 6 5 9 9 C 1.31655 * 121.90363 * 359.97438 * 8 7 6 10 10 C 1.46426 * 119.99424 * 180.02562 * 2 1 3 11 11 O 1.21700 * 119.99554 * 172.96788 * 10 2 1 12 12 N 1.34773 * 120.00708 * 352.96896 * 10 2 1 13 13 C 1.46496 * 120.00560 * 180.02562 * 12 10 2 14 14 C 1.52999 * 109.47295 * 179.97438 * 13 12 10 15 15 C 1.52999 * 109.47085 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.47314 * 179.97438 * 15 14 13 17 17 H 1.08004 * 119.99657 * 0.02562 * 16 15 14 18 18 C 1.37880 * 120.00213 * 179.97438 * 16 15 14 19 19 N 1.31509 * 119.99958 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 119.99998 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47335 * 59.99709 * 20 18 16 22 22 H 1.48497 * 109.47210 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47101 * 300.00062 * 20 18 16 24 24 H 1.08995 * 109.47381 * 89.99623 * 1 2 3 25 25 H 1.09006 * 109.47125 * 209.99801 * 1 2 3 26 26 H 1.08998 * 109.46758 * 329.99486 * 1 2 3 27 27 H 1.07999 * 120.00102 * 348.65642 * 3 2 1 28 28 H 1.08007 * 120.86797 * 359.97438 * 5 4 3 29 29 H 1.08004 * 120.33693 * 180.02562 * 6 5 4 30 30 H 1.07997 * 119.43200 * 179.97438 * 7 6 5 31 31 H 1.08007 * 119.73313 * 180.28296 * 9 8 7 32 32 H 0.97002 * 119.99349 * 359.97438 * 12 10 2 33 33 H 1.09007 * 109.46931 * 299.99731 * 13 12 10 34 34 H 1.09003 * 109.47421 * 59.99532 * 13 12 10 35 35 H 1.08998 * 109.46819 * 299.99238 * 14 13 12 36 36 H 1.08999 * 109.47422 * 59.99948 * 14 13 12 37 37 H 1.09000 * 109.47289 * 300.00204 * 15 14 13 38 38 H 1.09003 * 109.47403 * 59.99772 * 15 14 13 39 39 H 0.97000 * 120.00052 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1810 1.1674 0.0000 4 6 3.6316 1.1798 0.2509 5 6 4.4937 1.9082 -0.5818 6 6 5.8477 1.8869 -0.3018 7 6 6.3048 1.1553 0.7805 8 7 5.4713 0.4788 1.5476 9 6 4.1739 0.4665 1.3240 10 6 2.2390 -1.2682 -0.0006 11 8 3.4491 -1.2721 -0.1296 12 7 1.5728 -2.4310 0.1418 13 6 2.3052 -3.6997 0.1418 14 6 1.3204 -4.8572 0.3183 15 6 2.0853 -6.1823 0.3177 16 6 1.1154 -7.3224 0.4922 17 1 0.0589 -7.1219 0.5931 18 6 1.5765 -8.6214 0.5221 19 7 2.8628 -8.8656 0.3978 20 14 0.3742 -10.0346 0.7377 21 1 -0.6044 -10.0269 -0.3793 22 1 1.1165 -11.3207 0.7360 23 1 -0.3456 -9.8797 2.0273 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3634 -0.8901 0.5138 26 1 -0.3633 0.8899 0.5139 27 1 1.6569 2.0936 -0.1840 28 1 4.1100 2.4712 -1.4199 29 1 6.5415 2.4362 -0.9209 30 1 7.3620 1.1372 1.0003 31 1 3.5230 -0.0957 1.9772 32 1 0.6083 -2.4278 0.2450 33 1 2.8345 -3.8137 -0.8043 34 1 3.0226 -3.7052 0.9624 35 1 0.7915 -4.7431 1.2646 36 1 0.6027 -4.8521 -0.5020 37 1 2.6140 -6.2962 -0.6287 38 1 2.8033 -6.1878 1.1378 39 1 3.1872 -9.7795 0.4192 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846860708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:46:19 Heat of formation + Delta-G solvation = 1.544725 kcal Electronic energy + Delta-G solvation = -19998.099320 eV Core-core repulsion = 16905.578103 eV Total energy + Delta-G solvation = -3092.521217 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.43585 -39.27103 -35.68728 -34.93503 -33.42065 -32.42824 -31.58726 -30.71422 -27.14563 -26.83104 -24.16231 -23.44692 -22.86464 -21.58806 -20.65440 -18.94023 -17.40154 -16.64852 -16.44422 -16.20456 -15.65690 -15.26874 -14.75605 -14.47978 -14.17764 -13.96197 -13.68051 -13.43360 -13.14909 -13.07254 -12.70995 -12.62673 -12.25778 -11.85591 -11.72030 -11.63859 -10.88902 -10.73247 -10.63388 -10.26521 -9.94369 -9.87043 -9.63551 -9.45869 -9.24222 -9.13201 -8.73525 -8.37169 -8.30654 -6.01684 -4.05104 0.54943 1.34269 1.63728 3.29023 3.31843 3.36575 3.37802 3.42909 3.88812 4.35806 4.44044 4.60713 4.68689 4.81259 4.85717 4.91222 5.11128 5.19142 5.33209 5.33884 5.44313 5.63007 5.70459 5.75169 5.76920 5.92207 6.02081 6.13392 6.16325 6.25657 6.46805 6.58743 6.71035 6.82382 6.99386 7.62994 7.69531 7.75748 7.96738 8.05611 8.35302 8.39248 9.01327 9.59015 11.09580 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.027289 B = 0.003168 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.815938 B = 8836.175340 C = 9632.966219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.165 4.165 3 C -0.043 4.043 4 C -0.107 4.107 5 C -0.065 4.065 6 C -0.183 4.183 7 C 0.099 3.901 8 N -0.488 5.488 9 C 0.169 3.831 10 C 0.537 3.463 11 O -0.533 6.533 12 N -0.718 5.718 13 C 0.116 3.884 14 C -0.121 4.121 15 C 0.024 3.976 16 C -0.524 4.524 17 H 0.055 0.945 18 C 0.057 3.943 19 N -0.894 5.894 20 Si 0.894 3.106 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.137 0.863 28 H 0.130 0.870 29 H 0.131 0.869 30 H 0.151 0.849 31 H 0.144 0.856 32 H 0.398 0.602 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.018 0.982 38 H 0.019 0.981 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.090 24.396 -1.361 24.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.168 4.168 3 C -0.063 4.063 4 C -0.109 4.109 5 C -0.090 4.090 6 C -0.203 4.203 7 C -0.056 4.056 8 N -0.197 5.197 9 C 0.011 3.989 10 C 0.324 3.676 11 O -0.411 6.411 12 N -0.369 5.369 13 C -0.006 4.006 14 C -0.159 4.159 15 C -0.013 4.013 16 C -0.562 4.562 17 H 0.073 0.927 18 C -0.144 4.144 19 N -0.532 5.532 20 Si 0.721 3.279 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.202 1.202 24 H 0.093 0.907 25 H 0.090 0.910 26 H 0.092 0.908 27 H 0.155 0.845 28 H 0.148 0.852 29 H 0.149 0.851 30 H 0.168 0.832 31 H 0.161 0.839 32 H 0.233 0.767 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.037 0.963 38 H 0.037 0.963 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.738 23.718 -0.756 23.742 hybrid contribution -1.420 -0.517 -0.742 1.684 sum -2.158 23.202 -1.499 23.350 Atomic orbital electron populations 1.20814 0.90288 1.03335 1.02909 1.22018 0.96561 0.93164 1.05046 1.22016 0.92036 0.97193 0.95039 1.19825 0.93824 0.99426 0.97838 1.21551 0.93253 0.96579 0.97659 1.21925 0.96117 1.02515 0.99752 1.22754 0.99537 0.92250 0.91064 1.67590 1.04053 1.18183 1.29838 1.22701 0.91142 0.91266 0.93824 1.18262 0.87455 0.84274 0.77577 1.90882 1.13566 1.87213 1.49478 1.46239 1.11230 1.06638 1.72801 1.21660 0.95567 0.81376 1.02029 1.21889 0.97873 0.95404 1.00701 1.19021 0.95469 0.89197 0.97650 1.21163 0.93598 0.91180 1.50265 0.92702 1.25031 0.95130 0.99002 0.95282 1.69954 1.12869 1.20334 1.50081 0.86637 0.81053 0.81499 0.78678 1.20256 1.21256 1.20225 0.90681 0.91025 0.90792 0.84533 0.85207 0.85119 0.83206 0.83894 0.76721 0.91768 0.91621 0.92712 0.92773 0.96314 0.96256 0.92846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.82 9.75 36.01 0.35 -0.47 16 2 C -0.16 -1.73 5.89 -102.55 -0.60 -2.34 16 3 C -0.04 -0.41 9.43 -37.16 -0.35 -0.76 16 4 C -0.11 -1.31 4.36 -104.91 -0.46 -1.77 16 5 C -0.06 -0.70 9.95 -38.80 -0.39 -1.08 16 6 C -0.18 -1.92 10.09 -39.51 -0.40 -2.32 16 7 C 0.10 1.22 11.17 -17.45 -0.19 1.03 16 8 N -0.49 -7.42 10.34 -12.83 -0.13 -7.56 16 9 C 0.17 2.45 7.96 -17.05 -0.14 2.31 16 10 C 0.54 7.86 6.92 -12.97 -0.09 7.77 16 11 O -0.53 -9.75 12.49 5.19 0.06 -9.69 16 12 N -0.72 -10.26 5.51 -61.70 -0.34 -10.60 16 13 C 0.12 2.07 5.67 -4.04 -0.02 2.05 16 14 C -0.12 -2.37 5.27 -26.73 -0.14 -2.51 16 15 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 16 C -0.52 -14.69 9.11 -34.44 -0.31 -15.00 16 17 H 0.05 1.47 7.74 -52.48 -0.41 1.07 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.89 -27.00 13.29 55.43 0.74 -26.26 16 20 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.07 0.48 6.46 -51.93 -0.34 0.14 16 26 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 27 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 28 H 0.13 1.03 8.06 -52.48 -0.42 0.60 16 29 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 30 H 0.15 1.42 8.06 -52.49 -0.42 1.00 16 31 H 0.14 2.05 7.45 -52.48 -0.39 1.66 16 32 H 0.40 4.56 6.46 -40.82 -0.26 4.30 16 33 H 0.06 1.23 8.14 -51.92 -0.42 0.81 16 34 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 35 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 37 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 332.23 15.07 5.01 5.01 Total: -1.00 -34.18 332.23 -8.27 -42.44 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -5.60 Total: 1.20 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: -2.98 Total: -11.07 kcal Atomic # 7 Polarization: -44.68 SS G_CDS: 0.26 Total: -44.42 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.06 Total: -9.69 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.18 -8.27 -42.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846860708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.987 kcal (2) G-P(sol) polarization free energy of solvation -34.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds