Wall clock time and date at job start Mon Mar 30 2020 07:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34800 * 120.00188 * 2 1 4 4 C 1.47212 * 119.99822 * 168.64903 * 3 2 1 5 5 C 1.40263 * 120.58490 * 132.40028 * 4 3 2 6 6 C 1.38284 * 118.26917 * 179.97438 * 5 4 3 7 7 C 1.38395 * 119.33315 * 359.97438 * 6 5 4 8 8 N 1.31944 * 121.13668 * 0.02562 * 7 6 5 9 9 C 1.31655 * 121.90363 * 359.97438 * 8 7 6 10 10 C 1.46426 * 119.99424 * 180.02562 * 2 1 3 11 11 O 1.21700 * 119.99554 * 172.96788 * 10 2 1 12 12 N 1.34773 * 120.00708 * 352.96896 * 10 2 1 13 13 C 1.46496 * 120.00560 * 180.02562 * 12 10 2 14 14 C 1.52999 * 109.47295 * 179.97438 * 13 12 10 15 15 C 1.52999 * 109.47085 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.47314 * 179.97438 * 15 14 13 17 17 H 1.08004 * 119.99657 * 0.02562 * 16 15 14 18 18 C 1.37880 * 120.00213 * 179.97438 * 16 15 14 19 19 N 1.31509 * 119.99958 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 119.99998 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47335 * 59.99709 * 20 18 16 22 22 H 1.48497 * 109.47210 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47101 * 300.00062 * 20 18 16 24 24 H 1.08995 * 109.47381 * 89.99623 * 1 2 3 25 25 H 1.09006 * 109.47125 * 209.99801 * 1 2 3 26 26 H 1.08998 * 109.46758 * 329.99486 * 1 2 3 27 27 H 1.07999 * 120.00102 * 348.65642 * 3 2 1 28 28 H 1.08007 * 120.86797 * 359.97438 * 5 4 3 29 29 H 1.08004 * 120.33693 * 180.02562 * 6 5 4 30 30 H 1.07997 * 119.43200 * 179.97438 * 7 6 5 31 31 H 1.08007 * 119.73313 * 180.28296 * 9 8 7 32 32 H 0.97002 * 119.99349 * 359.97438 * 12 10 2 33 33 H 1.09007 * 109.46931 * 299.99731 * 13 12 10 34 34 H 1.09003 * 109.47421 * 59.99532 * 13 12 10 35 35 H 1.08998 * 109.46819 * 299.99238 * 14 13 12 36 36 H 1.08999 * 109.47422 * 59.99948 * 14 13 12 37 37 H 1.09000 * 109.47289 * 300.00204 * 15 14 13 38 38 H 1.09003 * 109.47403 * 59.99772 * 15 14 13 39 39 H 0.97000 * 120.00052 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1810 1.1674 0.0000 4 6 3.6316 1.1798 0.2509 5 6 4.4937 1.9082 -0.5818 6 6 5.8477 1.8869 -0.3018 7 6 6.3048 1.1553 0.7805 8 7 5.4713 0.4788 1.5476 9 6 4.1739 0.4665 1.3240 10 6 2.2390 -1.2682 -0.0006 11 8 3.4491 -1.2721 -0.1296 12 7 1.5728 -2.4310 0.1418 13 6 2.3052 -3.6997 0.1418 14 6 1.3204 -4.8572 0.3183 15 6 2.0853 -6.1823 0.3177 16 6 1.1154 -7.3224 0.4922 17 1 0.0589 -7.1219 0.5931 18 6 1.5765 -8.6214 0.5221 19 7 2.8628 -8.8656 0.3978 20 14 0.3742 -10.0346 0.7377 21 1 -0.6044 -10.0269 -0.3793 22 1 1.1165 -11.3207 0.7360 23 1 -0.3456 -9.8797 2.0273 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3634 -0.8901 0.5138 26 1 -0.3633 0.8899 0.5139 27 1 1.6569 2.0936 -0.1840 28 1 4.1100 2.4712 -1.4199 29 1 6.5415 2.4362 -0.9209 30 1 7.3620 1.1372 1.0003 31 1 3.5230 -0.0957 1.9772 32 1 0.6083 -2.4278 0.2450 33 1 2.8345 -3.8137 -0.8043 34 1 3.0226 -3.7052 0.9624 35 1 0.7915 -4.7431 1.2646 36 1 0.6027 -4.8521 -0.5020 37 1 2.6140 -6.2962 -0.6287 38 1 2.8033 -6.1878 1.1378 39 1 3.1872 -9.7795 0.4192 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846860708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:46:18 Heat of formation + Delta-G solvation = -21.177123 kcal Electronic energy + Delta-G solvation = -19999.084613 eV Core-core repulsion = 16905.578103 eV Total energy + Delta-G solvation = -3093.506510 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.43913 -40.33418 -37.12082 -35.90077 -35.26706 -33.49302 -32.98455 -31.86974 -28.71780 -27.75817 -25.62526 -24.51947 -23.98167 -22.75425 -22.33479 -20.09875 -18.57167 -18.26698 -17.53849 -17.25410 -16.92592 -16.62921 -16.45440 -15.76659 -15.41349 -14.94403 -14.74848 -14.30094 -14.22039 -13.95498 -13.92268 -13.76946 -13.59503 -13.43881 -13.21338 -12.72270 -12.57200 -12.48272 -12.37135 -11.70275 -11.61575 -11.30013 -11.11534 -10.84741 -10.56698 -10.53349 -10.24644 -9.96640 -9.20742 -8.20790 -6.33043 -0.31697 0.45682 0.75785 1.40705 1.44176 1.52077 2.21373 2.27544 2.42261 2.96275 3.12752 3.55294 3.74394 3.79426 4.02994 4.05017 4.12204 4.16720 4.21094 4.37580 4.50661 4.59747 4.67263 4.86871 4.88596 4.90257 4.95728 5.04787 5.13621 5.16615 5.22875 5.35687 5.41459 5.49354 5.53551 5.66988 5.81544 5.85456 6.19787 6.58599 6.84322 7.11574 7.25348 7.36809 8.91299 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.027289 B = 0.003168 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.815938 B = 8836.175340 C = 9632.966219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.173 4.173 3 C -0.028 4.028 4 C -0.118 4.118 5 C -0.069 4.069 6 C -0.177 4.177 7 C 0.076 3.924 8 N -0.528 5.528 9 C 0.141 3.859 10 C 0.530 3.470 11 O -0.576 6.576 12 N -0.710 5.710 13 C 0.132 3.868 14 C -0.101 4.101 15 C 0.024 3.976 16 C -0.543 4.543 17 H 0.068 0.932 18 C -0.004 4.004 19 N -0.936 5.936 20 Si 0.969 3.031 21 H -0.264 1.264 22 H -0.286 1.286 23 H -0.265 1.265 24 H 0.086 0.914 25 H 0.072 0.928 26 H 0.098 0.902 27 H 0.182 0.818 28 H 0.165 0.835 29 H 0.166 0.834 30 H 0.169 0.831 31 H 0.127 0.873 32 H 0.414 0.586 33 H 0.045 0.955 34 H 0.044 0.956 35 H 0.068 0.932 36 H 0.069 0.931 37 H -0.010 1.010 38 H -0.011 1.011 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.632 26.297 -2.273 26.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.176 4.176 3 C -0.048 4.048 4 C -0.120 4.120 5 C -0.094 4.094 6 C -0.197 4.197 7 C -0.079 4.079 8 N -0.238 5.238 9 C -0.017 4.017 10 C 0.320 3.680 11 O -0.457 6.457 12 N -0.362 5.362 13 C 0.008 3.992 14 C -0.139 4.139 15 C -0.014 4.014 16 C -0.581 4.581 17 H 0.086 0.914 18 C -0.202 4.202 19 N -0.576 5.576 20 Si 0.793 3.207 21 H -0.189 1.189 22 H -0.212 1.212 23 H -0.189 1.189 24 H 0.105 0.895 25 H 0.091 0.909 26 H 0.117 0.883 27 H 0.199 0.801 28 H 0.183 0.817 29 H 0.183 0.817 30 H 0.186 0.814 31 H 0.145 0.855 32 H 0.252 0.748 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.008 0.992 38 H 0.008 0.992 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.331 25.646 -1.662 25.914 hybrid contribution -0.507 -1.048 -0.469 1.255 sum -3.838 24.598 -2.131 24.986 Atomic orbital electron populations 1.20878 0.87280 1.04648 1.04043 1.22035 0.98292 0.90881 1.06362 1.22424 0.90704 0.98607 0.93090 1.20131 0.95715 0.98928 0.97241 1.22040 0.93233 0.96127 0.98035 1.22335 0.96949 1.01436 0.98949 1.23209 1.00245 0.92636 0.91787 1.67483 1.04918 1.19733 1.31674 1.22629 0.91093 0.92676 0.95291 1.19050 0.87219 0.85513 0.76246 1.90872 1.15664 1.87901 1.51262 1.46010 1.11907 1.05368 1.72935 1.21170 0.94958 0.82846 1.00215 1.21592 0.97512 0.92712 1.02046 1.18934 0.95145 0.92403 0.94887 1.21654 0.94530 0.92051 1.49819 0.91362 1.26062 0.97021 1.02323 0.94799 1.70113 1.15205 1.21044 1.51281 0.85437 0.78541 0.77348 0.79342 1.18879 1.21182 1.18930 0.89499 0.90923 0.88320 0.80094 0.81736 0.81672 0.81373 0.85531 0.74776 0.93611 0.93749 0.91293 0.91199 0.99154 0.99248 0.92791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.18 9.75 71.24 0.69 -0.48 16 2 C -0.17 -3.27 5.89 -18.52 -0.11 -3.38 16 3 C -0.03 -0.47 9.43 23.84 0.22 -0.25 16 4 C -0.12 -2.77 4.36 -20.05 -0.09 -2.86 16 5 C -0.07 -1.33 9.95 22.77 0.23 -1.10 16 6 C -0.18 -3.42 10.09 22.32 0.23 -3.19 16 7 C 0.08 1.89 11.17 84.71 0.95 2.84 16 8 N -0.53 -16.92 10.34 -194.51 -2.01 -18.93 16 9 C 0.14 4.26 7.96 85.10 0.68 4.94 16 10 C 0.53 15.46 6.92 86.38 0.60 16.06 16 11 O -0.58 -21.82 12.49 -4.35 -0.05 -21.88 16 12 N -0.71 -20.09 5.51 -467.34 -2.57 -22.67 16 13 C 0.13 4.89 5.67 86.38 0.49 5.38 16 14 C -0.10 -3.97 5.27 30.59 0.16 -3.81 16 15 C 0.02 1.28 4.97 29.85 0.15 1.43 16 16 C -0.54 -30.64 9.11 25.60 0.23 -30.41 16 17 H 0.07 3.59 7.74 -2.91 -0.02 3.56 16 18 C 0.00 -0.26 5.46 84.66 0.46 0.21 16 19 N -0.94 -58.10 13.29 21.45 0.28 -57.81 16 20 Si 0.97 44.08 29.54 68.60 2.03 46.11 16 21 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 22 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 23 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 24 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.07 0.75 6.46 -2.38 -0.02 0.74 16 26 H 0.10 0.59 8.08 -2.39 -0.02 0.57 16 27 H 0.18 1.37 8.06 -2.91 -0.02 1.35 16 28 H 0.17 1.92 8.06 -2.91 -0.02 1.90 16 29 H 0.17 1.93 8.06 -2.91 -0.02 1.91 16 30 H 0.17 3.21 8.06 -2.91 -0.02 3.19 16 31 H 0.13 3.96 7.45 -2.91 -0.02 3.94 16 32 H 0.41 8.84 6.46 -92.71 -0.60 8.24 16 33 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 34 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 36 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 37 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 38 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 39 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -78.27 332.23 3.00 -75.27 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: 0.44 Total: 14.55 kcal Atomic # 6 Polarization: -19.52 SS G_CDS: 4.89 Total: -14.63 kcal Atomic # 7 Polarization: -95.11 SS G_CDS: -4.30 Total: -99.41 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: -0.05 Total: -21.88 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -78.27 3.00 -75.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846860708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.092 kcal (2) G-P(sol) polarization free energy of solvation -78.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds