Wall clock time and date at job start Mon Mar 30 2020 07:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42900 * 109.46915 * 2 1 4 4 C 1.35823 * 117.00080 * 180.02562 * 3 2 1 5 5 C 1.38562 * 120.12738 * 359.97425 * 4 3 2 6 6 C 1.38202 * 120.07522 * 180.02562 * 5 4 3 7 7 C 1.38442 * 120.32880 * 0.02562 * 6 5 4 8 8 C 1.37950 * 120.25668 * 359.71865 * 7 6 5 9 9 C 1.39443 * 119.92002 * 0.55251 * 8 7 6 10 10 C 1.48125 * 120.16621 * 179.72143 * 9 8 7 11 11 C 1.37292 * 122.47955 * 359.72477 * 10 9 8 12 12 S 1.71006 * 109.08027 * 179.72926 * 11 10 9 13 13 C 1.75983 * 90.63504 * 0.31193 * 12 11 10 14 14 C 1.39850 * 125.28358 * 179.97438 * 13 12 11 15 15 H 1.08002 * 120.00205 * 179.70031 * 14 13 12 16 16 C 1.40153 * 120.00090 * 359.41871 * 14 13 12 17 17 N 1.30744 * 120.00066 * 0.27841 * 16 14 13 18 18 Si 1.86798 * 120.00307 * 180.27665 * 16 14 13 19 19 H 1.48500 * 109.47353 * 89.99793 * 18 16 14 20 20 H 1.48506 * 109.47225 * 210.00598 * 18 16 14 21 21 H 1.48504 * 109.46680 * 330.00042 * 18 16 14 22 22 N 1.31252 * 122.48079 * 179.70359 * 10 9 8 23 23 H 1.09003 * 109.47310 * 60.00197 * 1 2 3 24 24 H 1.09004 * 109.47156 * 180.02562 * 1 2 3 25 25 H 1.09007 * 109.47120 * 299.99888 * 1 2 3 26 26 H 1.08999 * 109.47268 * 239.99833 * 2 1 3 27 27 H 1.09003 * 109.47310 * 119.99803 * 2 1 3 28 28 H 1.08000 * 119.96190 * 0.02562 * 5 4 3 29 29 H 1.08002 * 119.83380 * 179.97438 * 6 5 4 30 30 H 1.08001 * 119.86790 * 180.02562 * 7 6 5 31 31 H 1.07997 * 120.03838 * 180.27245 * 8 7 6 32 32 H 1.08002 * 125.46116 * 359.97438 * 11 10 9 33 33 H 0.96996 * 120.00373 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3528 1.5253 -0.0005 5 6 4.1993 0.4284 -0.0005 6 6 5.5693 0.6108 -0.0005 7 6 6.1045 1.8875 0.0000 8 6 5.2744 2.9893 -0.0054 9 6 3.8906 2.8175 0.0004 10 6 2.9941 3.9967 0.0009 11 6 3.4699 5.2845 0.0015 12 16 2.1477 6.3690 -0.0056 13 6 1.0167 5.0208 0.0005 14 6 -0.3771 5.1356 -0.0009 15 1 -0.9921 4.2478 -0.0017 16 6 -0.9759 6.4028 0.0046 17 7 -0.2314 7.4776 0.0055 18 14 -2.8375 6.5562 0.0104 19 1 -3.3268 6.5927 1.4120 20 1 -3.2333 7.8073 -0.6849 21 1 -3.4324 5.3904 -0.6913 22 7 1.6861 3.8877 0.0005 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 3.7881 -0.5703 -0.0005 29 1 6.2255 -0.2470 -0.0001 30 1 7.1762 2.0215 -0.0005 31 1 5.6957 3.9837 -0.0094 32 1 4.5123 5.5674 0.0020 33 1 -0.6457 8.3546 0.0089 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019488708.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:30 Heat of formation + Delta-G solvation = 5.530137 kcal Electronic energy + Delta-G solvation = -18349.909085 eV Core-core repulsion = 15466.761803 eV Total energy + Delta-G solvation = -2883.147282 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 275.072 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.64712 -37.41394 -36.65011 -34.07195 -31.60889 -31.00626 -29.20592 -28.20944 -26.18522 -23.90304 -22.86461 -21.49908 -20.80686 -18.60527 -17.64652 -17.41002 -15.85039 -15.58856 -15.20416 -15.14883 -14.65149 -13.95595 -13.55794 -13.17375 -12.92709 -12.73498 -12.40451 -12.24214 -12.12168 -11.75725 -11.58465 -11.34869 -11.31738 -11.06971 -10.53096 -10.47414 -10.32319 -10.32061 -9.70198 -9.38073 -8.65787 -7.90570 -7.72233 -7.60082 -7.02504 -6.71772 -4.65933 1.57125 1.91531 2.62740 2.95602 3.01437 3.09542 3.57397 3.72535 3.79413 3.98224 4.07983 4.55506 5.15338 5.24074 5.24600 5.34308 5.38704 5.41208 5.53470 5.74814 5.78551 5.85540 6.14294 6.14740 6.39318 6.44622 6.64257 6.74487 6.76776 6.87770 6.91653 7.17378 7.44953 7.56980 7.96430 8.10354 8.38312 8.48698 9.82287 9.90117 Molecular weight = 275.07amu Principal moments of inertia in cm(-1) A = 0.020412 B = 0.006178 C = 0.004759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.385218 B = 4531.378204 C = 5882.306822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.050 3.950 3 O -0.259 6.259 4 C 0.150 3.850 5 C -0.222 4.222 6 C -0.096 4.096 7 C -0.166 4.166 8 C -0.077 4.077 9 C -0.027 4.027 10 C 0.140 3.860 11 C -0.455 4.455 12 S 0.113 5.887 13 C 0.203 3.797 14 C -0.374 4.374 15 H 0.102 0.898 16 C 0.055 3.945 17 N -0.785 5.785 18 Si 0.940 3.060 19 H -0.265 1.265 20 H -0.273 1.273 21 H -0.258 1.258 22 N -0.561 5.561 23 H 0.068 0.932 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.121 0.879 29 H 0.116 0.884 30 H 0.117 0.883 31 H 0.127 0.873 32 H 0.130 0.870 33 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.956 -8.161 -0.009 8.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.026 4.026 3 O -0.171 6.171 4 C 0.102 3.898 5 C -0.241 4.241 6 C -0.115 4.115 7 C -0.184 4.184 8 C -0.096 4.096 9 C -0.030 4.030 10 C 0.000 4.000 11 C -0.600 4.600 12 S 0.374 5.626 13 C -0.052 4.052 14 C -0.417 4.417 15 H 0.120 0.880 16 C -0.167 4.167 17 N -0.414 5.414 18 Si 0.763 3.237 19 H -0.190 1.190 20 H -0.198 1.198 21 H -0.181 1.181 22 N -0.281 5.281 23 H 0.087 0.913 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.139 0.861 29 H 0.134 0.866 30 H 0.135 0.865 31 H 0.144 0.856 32 H 0.148 0.852 33 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.362 -7.087 -0.021 7.471 hybrid contribution 0.203 -0.839 0.021 0.864 sum 2.565 -7.926 -0.001 8.331 Atomic orbital electron populations 1.21678 0.92967 1.01506 1.04198 1.22718 0.96174 0.83755 1.00001 1.86609 1.17515 1.26047 1.86882 1.19148 0.83221 0.92952 0.94514 1.21107 0.94372 0.97565 1.11050 1.20795 0.94121 0.96896 0.99647 1.20821 0.99190 0.92402 1.05993 1.21005 0.91460 0.98985 0.98166 1.17992 0.92083 0.89627 1.03284 1.18590 0.89938 0.89876 1.01607 1.26388 1.04441 0.98788 1.30356 1.84173 0.94227 1.12097 1.72107 1.23952 0.97402 0.87878 0.95969 1.18927 0.89177 0.93870 1.39695 0.88006 1.26140 1.02890 0.94728 0.92932 1.68785 1.38365 0.99953 1.34329 0.85745 0.79364 0.79021 0.79534 1.19020 1.19820 1.18117 1.67416 1.04077 1.26171 1.30408 0.91341 0.91434 0.91347 0.93089 0.93090 0.86095 0.86643 0.86482 0.85563 0.85168 0.89022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 10.28 37.16 0.38 -1.68 16 2 C 0.05 0.77 5.46 37.16 0.20 0.97 16 3 O -0.26 -5.50 8.19 -19.18 -0.16 -5.65 16 4 C 0.15 3.08 6.69 -38.82 -0.26 2.82 16 5 C -0.22 -3.67 9.03 -39.47 -0.36 -4.02 16 6 C -0.10 -1.42 10.03 -39.52 -0.40 -1.82 16 7 C -0.17 -2.57 10.03 -39.61 -0.40 -2.97 16 8 C -0.08 -1.42 9.48 -39.24 -0.37 -1.80 16 9 C -0.03 -0.59 5.89 -104.74 -0.62 -1.21 16 10 C 0.14 3.63 6.65 -84.40 -0.56 3.06 16 11 C -0.45 -11.41 10.42 30.39 0.32 -11.10 16 12 S 0.11 2.95 20.12 -107.50 -2.16 0.78 16 13 C 0.20 5.65 7.11 -17.05 -0.12 5.53 16 14 C -0.37 -9.84 9.44 -38.26 -0.36 -10.20 16 15 H 0.10 2.60 7.85 -52.49 -0.41 2.18 16 16 C 0.05 1.30 5.50 -17.30 -0.10 1.20 16 17 N -0.78 -19.07 10.63 55.56 0.59 -18.48 16 18 Si 0.94 17.70 29.56 -169.99 -5.03 12.67 16 19 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 20 H -0.27 -4.98 7.11 56.52 0.40 -4.57 16 21 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 22 N -0.56 -15.58 8.78 -9.51 -0.08 -15.67 16 23 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 24 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.05 0.70 7.66 -51.93 -0.40 0.30 16 27 H 0.05 0.70 7.66 -51.93 -0.40 0.30 16 28 H 0.12 1.67 6.30 -52.49 -0.33 1.34 16 29 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 30 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 31 H 0.13 2.20 6.61 -52.49 -0.35 1.85 16 32 H 0.13 2.93 6.85 -52.49 -0.36 2.57 16 33 H 0.30 6.45 8.29 -40.82 -0.34 6.11 16 LS Contribution 296.38 15.07 4.47 4.47 Total: -1.00 -29.96 296.38 -8.50 -38.46 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -3.49 Total: 4.62 kcal Atomic # 6 Polarization: -18.57 SS G_CDS: -2.64 Total: -21.20 kcal Atomic # 7 Polarization: -34.66 SS G_CDS: 0.51 Total: -34.15 kcal Atomic # 8 Polarization: -5.50 SS G_CDS: -0.16 Total: -5.65 kcal Atomic # 14 Polarization: 17.70 SS G_CDS: -5.03 Total: 12.67 kcal Atomic # 16 Polarization: 2.95 SS G_CDS: -2.16 Total: 0.78 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.96 -8.50 -38.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019488708.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.990 kcal (2) G-P(sol) polarization free energy of solvation -29.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds