Wall clock time and date at job start Mon Mar 30 2020 07:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46896 * 111.00181 * 2 1 4 4 C 1.50698 * 109.47781 * 66.04136 * 3 2 1 5 5 H 1.08000 * 119.99209 * 0.02562 * 4 3 2 6 6 C 1.37874 * 120.00288 * 180.02562 * 4 3 2 7 7 N 1.31512 * 119.99802 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 119.99862 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.47360 * 89.99833 * 8 6 4 10 10 H 1.48501 * 109.46746 * 209.99883 * 8 6 4 11 11 H 1.48498 * 109.47222 * 329.99265 * 8 6 4 12 12 C 1.46899 * 111.00282 * 236.03728 * 2 1 3 13 13 C 1.53000 * 109.47330 * 288.06921 * 12 2 1 14 14 C 1.52994 * 112.84894 * 303.38029 * 13 12 2 15 15 Br 1.96601 * 109.47115 * 294.69209 * 14 13 12 16 16 C 1.53782 * 113.61520 * 172.17868 * 13 12 2 17 17 C 1.53953 * 87.02032 * 220.04803 * 16 13 12 18 18 C 1.53781 * 87.11223 * 25.36491 * 17 16 13 19 19 H 1.09000 * 109.47456 * 188.97520 * 1 2 3 20 20 H 1.08996 * 109.47532 * 308.97939 * 1 2 3 21 21 H 1.08999 * 109.46976 * 68.97410 * 1 2 3 22 22 H 1.09003 * 109.47264 * 186.04749 * 3 2 1 23 23 H 1.09006 * 109.46598 * 306.03596 * 3 2 1 24 24 H 0.97000 * 119.99789 * 180.02562 * 7 6 4 25 25 H 1.09003 * 109.47442 * 168.07148 * 12 2 1 26 26 H 1.08996 * 109.46950 * 48.06812 * 12 2 1 27 27 H 1.09006 * 109.47640 * 54.69361 * 14 13 12 28 28 H 1.09007 * 109.47168 * 174.69427 * 14 13 12 29 29 H 1.08995 * 113.61466 * 334.57445 * 16 13 12 30 30 H 1.09000 * 113.60855 * 105.46974 * 16 13 12 31 31 H 1.09000 * 113.54171 * 270.81048 * 17 16 13 32 32 H 1.09003 * 113.74099 * 139.94529 * 17 16 13 33 33 H 1.08999 * 113.61608 * 220.08761 * 18 17 16 34 34 H 1.08996 * 113.69330 * 89.19125 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0473 1.2983 5 1 1.0745 1.5114 2.0486 6 6 2.0268 3.3496 1.5283 7 7 2.7120 4.0018 0.6147 8 14 1.5830 4.1870 3.1379 9 1 2.6603 3.9509 4.1323 10 1 1.4301 5.6466 2.9108 11 1 0.3055 3.6294 3.6502 12 6 1.9954 -0.7661 -1.1374 13 6 1.7606 -2.2591 -0.8993 14 6 2.3773 -2.7561 0.4097 15 35 4.3352 -2.6098 0.3088 16 6 2.1023 -3.1380 -2.1141 17 6 0.8447 -3.9580 -1.7732 18 6 0.2976 -2.6914 -1.0941 19 1 -0.3634 -1.0151 0.1603 20 1 -0.3634 0.6464 0.7988 21 1 -0.3633 0.3687 -0.9592 22 1 3.0797 1.3443 -0.1083 23 1 1.5612 1.9272 -0.8311 24 1 2.9867 4.9179 0.7766 25 1 3.0644 -0.5782 -1.2386 26 1 1.4846 -0.4590 -2.0500 27 1 2.0098 -2.1499 1.2378 28 1 2.0986 -3.7977 0.5702 29 1 2.0357 -2.6117 -3.0662 30 1 3.0320 -3.6957 -2.0017 31 1 1.0341 -4.7778 -1.0803 32 1 0.2718 -4.2667 -2.6477 33 1 -0.2275 -2.8890 -0.1596 34 1 -0.2637 -2.0419 -1.7658 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083173371.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:08 Heat of formation + Delta-G solvation = 17.573775 kcal Electronic energy + Delta-G solvation = -14764.192963 eV Core-core repulsion = 12357.787620 eV Total energy + Delta-G solvation = -2406.405342 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 275.058 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.67216 -35.81344 -32.46657 -31.08752 -28.53285 -27.20739 -26.37785 -25.18041 -24.25709 -21.98480 -20.02881 -18.12285 -16.32654 -15.44294 -15.24801 -14.82763 -14.10613 -13.91925 -13.34296 -12.93457 -12.62523 -12.30778 -12.06911 -11.82763 -11.35537 -11.23986 -10.94561 -10.82118 -10.80275 -10.57778 -10.44719 -10.12827 -9.88410 -9.65228 -9.41571 -9.28300 -9.06732 -8.39895 -7.19722 -5.98978 -3.99888 2.12596 3.34159 3.39977 3.42956 4.43856 4.63655 4.66681 4.72866 4.93664 5.18056 5.27771 5.37410 5.41020 5.68939 5.81995 5.93776 5.94929 5.98634 6.01227 6.16023 6.19612 6.36130 6.36905 6.49714 6.55673 6.79804 7.36265 7.39788 7.83729 8.14592 8.25629 8.59804 9.07613 9.63966 11.11995 Molecular weight = 275.06amu Principal moments of inertia in cm(-1) A = 0.023372 B = 0.006418 C = 0.005499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.740976 B = 4361.374357 C = 5090.605577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.535 5.535 3 C 0.194 3.806 4 C -0.504 4.504 5 H 0.062 0.938 6 C 0.055 3.945 7 N -0.899 5.899 8 Si 0.896 3.104 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.274 1.274 12 C 0.066 3.934 13 C -0.074 4.074 14 C -0.036 4.036 15 Br -0.169 7.169 16 C -0.133 4.133 17 C -0.145 4.145 18 C -0.122 4.122 19 H 0.052 0.948 20 H 0.072 0.928 21 H 0.007 0.993 22 H 0.030 0.970 23 H -0.012 1.012 24 H 0.260 0.740 25 H 0.075 0.925 26 H 0.025 0.975 27 H 0.116 0.884 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.267 -16.457 -3.832 16.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.259 5.259 3 C 0.069 3.931 4 C -0.543 4.543 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.724 3.276 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.199 1.199 12 C -0.063 4.063 13 C -0.075 4.075 14 C -0.151 4.151 15 Br -0.089 7.089 16 C -0.171 4.171 17 C -0.182 4.182 18 C -0.161 4.161 19 H 0.071 0.929 20 H 0.090 0.910 21 H 0.025 0.975 22 H 0.048 0.952 23 H 0.006 0.994 24 H 0.070 0.930 25 H 0.093 0.907 26 H 0.044 0.956 27 H 0.135 0.865 28 H 0.104 0.896 29 H 0.100 0.900 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.352 -16.441 -3.451 16.803 hybrid contribution -0.852 1.031 0.094 1.341 sum -1.204 -15.410 -3.357 15.817 Atomic orbital electron populations 1.22439 0.89315 1.00334 0.99858 1.62022 1.06586 1.17652 1.39625 1.19710 0.95398 0.81601 0.96380 1.21152 1.34639 0.96816 1.01699 0.91948 1.24980 0.95393 0.97398 0.96861 1.69962 1.38472 1.11432 1.33994 0.86528 0.78806 0.78436 0.83796 1.20640 1.21394 1.19938 1.22058 1.00721 0.90999 0.92480 1.21867 0.96098 0.96042 0.93510 1.24403 0.85610 1.03638 1.01462 1.97300 1.13123 1.99227 1.99208 1.23071 0.98201 0.97838 0.97981 1.22913 0.97809 0.96981 1.00519 1.23032 0.95533 0.96826 1.00685 0.92937 0.90951 0.97463 0.95174 0.99439 0.92999 0.90681 0.95642 0.86540 0.89617 0.89988 0.90970 0.90513 0.91737 0.91213 0.89796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 8.63 60.06 0.52 1.07 16 2 N -0.54 -11.14 3.98 -244.38 -0.97 -12.12 16 3 C 0.19 5.06 4.71 -4.98 -0.02 5.04 16 4 C -0.50 -14.16 8.39 -34.44 -0.29 -14.45 16 5 H 0.06 1.73 7.17 -52.49 -0.38 1.35 16 6 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 7 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 8 Si 0.90 21.81 29.54 -169.99 -5.02 16.79 16 9 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 12 C 0.07 1.17 4.28 -3.82 -0.02 1.15 16 13 C -0.07 -1.02 0.58 -153.70 -0.09 -1.10 16 14 C -0.04 -0.49 5.76 37.15 0.21 -0.28 16 15 Br -0.17 -2.56 32.29 -68.01 -2.20 -4.76 16 16 C -0.13 -1.56 7.06 -25.83 -0.18 -1.75 16 17 C -0.14 -1.48 7.74 -25.83 -0.20 -1.68 16 18 C -0.12 -1.46 4.89 -25.92 -0.13 -1.59 16 19 H 0.05 0.83 5.11 -51.93 -0.27 0.56 16 20 H 0.07 1.50 6.66 -51.93 -0.35 1.15 16 21 H 0.01 0.13 8.01 -51.93 -0.42 -0.29 16 22 H 0.03 0.85 7.86 -51.93 -0.41 0.45 16 23 H -0.01 -0.34 8.12 -51.93 -0.42 -0.77 16 24 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 25 H 0.07 1.43 7.15 -51.93 -0.37 1.06 16 26 H 0.03 0.45 7.93 -51.93 -0.41 0.04 16 27 H 0.12 1.84 7.60 -51.93 -0.39 1.44 16 28 H 0.09 0.98 7.32 -51.93 -0.38 0.60 16 29 H 0.08 0.96 8.10 -51.93 -0.42 0.54 16 30 H 0.07 0.85 7.48 -51.93 -0.39 0.46 16 31 H 0.08 0.72 7.61 -51.93 -0.40 0.33 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.81 7.36 -51.93 -0.38 0.43 16 34 H 0.08 1.04 7.77 -51.93 -0.40 0.63 16 LS Contribution 285.63 15.07 4.30 4.30 Total: -1.00 -29.21 285.63 -8.78 -37.99 By element: Atomic # 1 Polarization: 1.52 SS G_CDS: -5.34 Total: -3.82 kcal Atomic # 6 Polarization: -11.83 SS G_CDS: -0.29 Total: -12.12 kcal Atomic # 7 Polarization: -38.16 SS G_CDS: -0.24 Total: -38.39 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 35 Polarization: -2.56 SS G_CDS: -2.20 Total: -4.76 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -29.21 -8.78 -37.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083173371.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.568 kcal (2) G-P(sol) polarization free energy of solvation -29.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds