Wall clock time and date at job start Mon Mar 30 2020 07:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47584 * 2 1 4 4 C 1.50697 * 109.47294 * 120.00106 * 2 1 3 5 5 H 1.08002 * 120.00423 * 119.99673 * 4 2 1 6 6 C 1.37880 * 120.00159 * 299.99931 * 4 2 1 7 7 N 1.31518 * 120.00031 * 179.97438 * 6 4 2 8 8 Si 1.86795 * 119.99890 * 0.02562 * 6 4 2 9 9 H 1.48503 * 109.47334 * 89.99703 * 8 6 4 10 10 H 1.48498 * 109.47230 * 210.00109 * 8 6 4 11 11 H 1.48502 * 109.47265 * 329.99954 * 8 6 4 12 12 N 1.46905 * 109.47278 * 239.99997 * 2 1 3 13 13 C 1.46899 * 111.00076 * 183.95226 * 12 2 1 14 14 C 1.46906 * 110.99490 * 60.00298 * 12 2 1 15 15 C 1.53004 * 109.46736 * 189.55726 * 14 12 2 16 16 C 1.53002 * 115.55034 * 54.66044 * 15 14 12 17 17 Br 1.96595 * 109.47217 * 39.75015 * 16 15 14 18 18 C 1.52998 * 117.51694 * 200.36848 * 15 14 12 19 19 C 1.52994 * 60.00239 * 107.47554 * 18 15 14 20 20 H 1.09003 * 109.46930 * 299.99919 * 1 2 3 21 21 H 1.08998 * 109.46800 * 59.99518 * 1 2 3 22 22 H 1.08994 * 109.46908 * 180.02562 * 1 2 3 23 23 H 0.96998 * 119.99668 * 180.02562 * 7 6 4 24 24 H 1.09000 * 109.47382 * 290.81723 * 13 12 2 25 25 H 1.08998 * 109.46707 * 50.82146 * 13 12 2 26 26 H 1.09005 * 109.46994 * 170.81599 * 13 12 2 27 27 H 1.08991 * 109.47154 * 69.55216 * 14 12 2 28 28 H 1.09001 * 109.46925 * 309.55251 * 14 12 2 29 29 H 1.09004 * 109.46605 * 159.75223 * 16 15 14 30 30 H 1.09000 * 109.47218 * 279.74619 * 16 15 14 31 31 H 1.09003 * 117.49656 * 214.97051 * 18 15 14 32 32 H 1.09008 * 117.49537 * 359.97438 * 18 15 14 33 33 H 1.09002 * 117.50132 * 252.50972 * 19 18 15 34 34 H 1.08997 * 117.49834 * 107.49133 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4827 7 7 2.1373 -0.8597 3.5565 8 14 0.6248 1.2789 2.6542 9 1 -0.8028 0.8725 2.6999 10 1 0.9760 1.9950 3.9068 11 1 0.8470 2.1764 1.4921 12 7 2.0197 -0.6925 -1.1995 13 6 3.4851 -0.7945 -1.1871 14 6 1.5487 -0.0262 -2.4211 15 6 1.8726 -0.8991 -3.6352 16 6 1.3472 -2.3348 -3.5749 17 35 -0.4540 -2.3409 -2.7870 18 6 1.9124 -0.2183 -5.0048 19 6 3.2130 -0.6662 -4.3352 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3633 -1.0276 0.0005 23 1 1.9027 -0.5285 4.4375 24 1 3.9195 0.1959 -1.3234 25 1 3.8125 -1.2066 -0.2326 26 1 3.8106 -1.4486 -1.9960 27 1 2.0460 0.9381 -2.5238 28 1 0.4710 0.1254 -2.3598 29 1 1.3045 -2.7487 -4.5824 30 1 2.0142 -2.9404 -2.9613 31 1 1.5641 -0.7933 -5.8629 32 1 1.7073 0.8517 -5.0411 33 1 3.8639 0.1090 -3.9309 34 1 3.7206 -1.5358 -4.7527 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083175740.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:21 Heat of formation + Delta-G solvation = 39.260014 kcal Electronic energy + Delta-G solvation = -15029.730429 eV Core-core repulsion = 12624.265472 eV Total energy + Delta-G solvation = -2405.464957 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 275.058 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.78265 -36.10822 -32.46687 -30.82596 -30.03039 -27.58843 -26.37833 -24.50962 -23.44598 -22.34987 -19.63677 -18.62807 -16.70564 -15.60894 -15.03410 -14.73412 -14.30801 -13.59107 -13.28396 -12.94071 -12.69324 -12.42921 -12.23993 -11.76996 -11.46506 -11.25566 -11.08909 -10.96173 -10.65852 -10.46792 -10.06455 -9.96851 -9.63403 -9.44485 -9.30537 -9.13648 -8.90181 -8.51297 -7.26938 -6.02593 -4.00087 2.12518 3.30642 3.39825 3.41753 3.80012 4.43990 4.57929 4.73025 4.96379 5.03452 5.18245 5.31889 5.48531 5.62494 5.77970 5.88043 5.99522 6.07762 6.11919 6.19691 6.27481 6.34254 6.52996 6.61837 6.68601 6.89808 6.98760 7.39138 7.67318 8.01801 8.16987 8.71212 9.04106 9.60150 11.10204 Molecular weight = 275.06amu Principal moments of inertia in cm(-1) A = 0.024436 B = 0.007762 C = 0.006760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1145.593531 B = 3606.516059 C = 4141.307930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.185 3.815 3 H -0.007 1.007 4 C -0.500 4.500 5 H 0.083 0.917 6 C 0.069 3.931 7 N -0.901 5.901 8 Si 0.886 3.114 9 H -0.279 1.279 10 H -0.299 1.299 11 H -0.270 1.270 12 N -0.515 5.515 13 C 0.034 3.966 14 C 0.079 3.921 15 C -0.114 4.114 16 C -0.022 4.022 17 Br -0.149 7.149 18 C -0.173 4.173 19 C -0.167 4.167 20 H 0.036 0.964 21 H 0.028 0.972 22 H 0.065 0.935 23 H 0.263 0.737 24 H 0.006 0.994 25 H 0.083 0.917 26 H 0.047 0.953 27 H 0.023 0.977 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.104 0.896 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.076 -0.999 -17.272 17.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.077 3.923 3 H 0.011 0.989 4 C -0.538 4.538 5 H 0.101 0.899 6 C -0.132 4.132 7 N -0.540 5.540 8 Si 0.717 3.283 9 H -0.206 1.206 10 H -0.227 1.227 11 H -0.195 1.195 12 N -0.239 5.239 13 C -0.115 4.115 14 C -0.049 4.049 15 C -0.115 4.115 16 C -0.138 4.138 17 Br -0.068 7.068 18 C -0.211 4.211 19 C -0.205 4.205 20 H 0.054 0.946 21 H 0.047 0.953 22 H 0.084 0.916 23 H 0.073 0.927 24 H 0.025 0.975 25 H 0.102 0.898 26 H 0.066 0.934 27 H 0.041 0.959 28 H 0.107 0.893 29 H 0.103 0.897 30 H 0.123 0.877 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.114 0.886 34 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.887 -1.494 -16.777 17.089 hybrid contribution 0.137 1.667 0.054 1.674 sum -2.751 0.173 -16.724 16.949 Atomic orbital electron populations 1.22195 0.98443 1.01669 0.97732 1.19633 0.91515 0.92319 0.88794 0.98945 1.20979 1.31601 1.13388 0.87872 0.89883 1.24911 0.95849 0.96571 0.95869 1.69883 1.45945 1.40318 0.97823 0.86893 0.80891 0.83922 0.76638 1.20591 1.22681 1.19540 1.61867 1.09488 1.51731 1.00805 1.22334 0.88264 0.98320 1.02543 1.21806 1.01583 0.92787 0.88740 1.21494 1.00833 0.95163 0.94024 1.23944 0.90811 0.97582 1.01437 1.97330 1.23820 1.99223 1.86470 1.23098 1.01672 1.01097 0.95202 1.23064 0.90640 1.03270 1.03543 0.94552 0.95331 0.91575 0.92733 0.97538 0.89818 0.93402 0.95921 0.89344 0.89702 0.87742 0.88822 0.88783 0.88587 0.88873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 8.47 37.16 0.31 -2.90 16 2 C 0.18 4.38 1.65 -68.86 -0.11 4.27 16 3 H -0.01 -0.17 7.20 -51.93 -0.37 -0.55 16 4 C -0.50 -13.90 8.39 -34.44 -0.29 -14.19 16 5 H 0.08 2.49 6.69 -52.49 -0.35 2.14 16 6 C 0.07 2.00 5.45 -17.82 -0.10 1.90 16 7 N -0.90 -27.57 13.96 55.43 0.77 -26.79 16 8 Si 0.89 22.33 24.37 -169.99 -4.14 18.19 16 9 H -0.28 -6.91 6.87 56.52 0.39 -6.52 16 10 H -0.30 -7.55 7.11 56.52 0.40 -7.14 16 11 H -0.27 -6.59 6.53 56.52 0.37 -6.22 16 12 N -0.52 -10.30 4.27 -236.28 -1.01 -11.31 16 13 C 0.03 0.64 8.81 60.06 0.53 1.17 16 14 C 0.08 1.34 3.89 -3.82 -0.01 1.32 16 15 C -0.11 -1.52 1.45 -154.51 -0.22 -1.74 16 16 C -0.02 -0.28 6.41 37.16 0.24 -0.05 16 17 Br -0.15 -2.29 32.09 -68.01 -2.18 -4.48 16 18 C -0.17 -1.88 9.90 -26.74 -0.26 -2.14 16 19 C -0.17 -1.90 8.43 -26.73 -0.23 -2.12 16 20 H 0.04 0.85 3.27 -51.93 -0.17 0.68 16 21 H 0.03 0.56 6.21 -51.93 -0.32 0.24 16 22 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 23 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 24 H 0.01 0.11 8.08 -51.93 -0.42 -0.31 16 25 H 0.08 1.80 5.95 -51.93 -0.31 1.50 16 26 H 0.05 0.77 6.52 -51.93 -0.34 0.43 16 27 H 0.02 0.39 8.03 -51.93 -0.42 -0.03 16 28 H 0.09 1.55 4.78 -51.93 -0.25 1.30 16 29 H 0.08 0.90 7.95 -51.93 -0.41 0.49 16 30 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 31 H 0.09 0.88 8.08 -51.93 -0.42 0.46 16 32 H 0.09 1.00 8.14 -51.92 -0.42 0.58 16 33 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 279.82 15.07 4.22 4.22 Total: -1.00 -29.44 279.82 -7.57 -37.01 By element: Atomic # 1 Polarization: 2.73 SS G_CDS: -5.08 Total: -2.35 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: -0.15 Total: -14.49 kcal Atomic # 7 Polarization: -37.87 SS G_CDS: -0.24 Total: -38.11 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.14 Total: 18.19 kcal Atomic # 35 Polarization: -2.29 SS G_CDS: -2.18 Total: -4.48 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -29.44 -7.57 -37.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083175740.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.269 kcal (2) G-P(sol) polarization free energy of solvation -29.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds