Wall clock time and date at job start Mon Mar 30 2020 07:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47200 * 2 1 4 4 C 1.50699 * 109.47118 * 240.00129 * 2 1 3 5 5 H 1.08002 * 119.99314 * 240.00180 * 4 2 1 6 6 C 1.37871 * 120.00080 * 59.99691 * 4 2 1 7 7 N 1.31515 * 120.00523 * 0.02562 * 6 4 2 8 8 Si 1.86810 * 119.99827 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47094 * 60.00141 * 8 6 4 10 10 H 1.48502 * 109.46911 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47228 * 300.00373 * 8 6 4 12 12 N 1.46903 * 109.46827 * 119.99722 * 2 1 3 13 13 C 1.46904 * 110.99480 * 176.04553 * 12 2 1 14 14 C 1.46899 * 111.00179 * 299.99946 * 12 2 1 15 15 C 1.52991 * 109.47086 * 164.45859 * 14 12 2 16 16 C 1.53004 * 115.55199 * 305.45714 * 15 14 12 17 17 Br 1.96602 * 109.46606 * 297.72072 * 16 15 14 18 18 C 1.53004 * 117.50175 * 159.78539 * 15 14 12 19 19 C 1.52997 * 117.50230 * 91.12421 * 15 14 12 20 20 H 1.08996 * 109.47300 * 300.00118 * 1 2 3 21 21 H 1.08998 * 109.47298 * 60.00059 * 1 2 3 22 22 H 1.09003 * 109.47200 * 180.02562 * 1 2 3 23 23 H 0.97001 * 120.00322 * 179.97438 * 7 6 4 24 24 H 1.09006 * 109.46879 * 58.61465 * 13 12 2 25 25 H 1.09001 * 109.46870 * 178.61272 * 13 12 2 26 26 H 1.08992 * 109.47303 * 298.61459 * 13 12 2 27 27 H 1.08999 * 109.47084 * 284.45782 * 14 12 2 28 28 H 1.08997 * 109.46924 * 44.45457 * 14 12 2 29 29 H 1.08993 * 109.46988 * 57.71417 * 16 15 14 30 30 H 1.08992 * 109.47404 * 177.72448 * 16 15 14 31 31 H 1.08999 * 117.49589 * 0.02562 * 18 15 14 32 32 H 1.08993 * 117.49927 * 145.01730 * 18 15 14 33 33 H 1.08998 * 117.50258 * 214.98088 * 19 15 14 34 34 H 1.09006 * 117.49727 * 359.97438 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6035 8 14 2.3214 -1.1204 -4.0079 9 1 1.8258 -2.5203 -4.0077 10 1 1.8269 -0.4200 -5.2204 11 1 3.8064 -1.1211 -4.0082 12 7 2.0196 -0.6925 1.1995 13 6 3.4851 -0.7945 1.1871 14 6 1.5486 -0.0263 2.4211 15 6 1.7367 -0.9618 3.6170 16 6 1.0958 -2.3444 3.4805 17 35 -0.8527 -2.1490 3.3062 18 6 1.7643 -0.3304 5.0104 19 6 3.0552 -0.8674 4.3873 20 1 -0.3634 0.5138 0.8899 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 0.7095 1.1618 -3.4845 24 1 3.9184 0.2044 1.1343 25 1 3.8225 -1.2893 2.0978 26 1 3.8016 -1.3741 0.3200 27 1 2.1214 0.8872 2.5807 28 1 0.4923 0.2210 2.3158 29 1 1.4916 -2.8425 2.5956 30 1 1.3236 -2.9393 4.3649 31 1 1.6480 0.7515 5.0751 32 1 1.3262 -0.9001 5.8298 33 1 3.4659 -1.7901 4.7971 34 1 3.7890 -0.1390 4.0418 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083175741.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:24 Heat of formation + Delta-G solvation = 27.842471 kcal Electronic energy + Delta-G solvation = -14894.238250 eV Core-core repulsion = 12488.278192 eV Total energy + Delta-G solvation = -2405.960058 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 275.058 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.63193 -35.91572 -32.55949 -30.75601 -29.09510 -27.58178 -26.25425 -24.60342 -23.19239 -22.28408 -19.67112 -18.49080 -16.23875 -15.42626 -14.99022 -14.76709 -14.00904 -13.49833 -13.06763 -12.94782 -12.46818 -12.28643 -11.88342 -11.44727 -11.28897 -11.04944 -10.97397 -10.84513 -10.66018 -10.26788 -10.03093 -9.95763 -9.62561 -9.48126 -9.40285 -9.27138 -8.79347 -8.36905 -7.12842 -5.96762 -4.01056 2.10768 3.33959 3.38475 3.41132 3.94933 4.43768 4.69242 4.81804 5.05831 5.09457 5.31705 5.40431 5.54822 5.70022 5.94535 6.02023 6.10910 6.18613 6.21497 6.26701 6.44834 6.49283 6.81200 6.97079 7.17307 7.23877 7.60176 7.79639 7.87591 8.28212 8.38412 8.65476 9.05119 9.63621 11.09939 Molecular weight = 275.06amu Principal moments of inertia in cm(-1) A = 0.025212 B = 0.006618 C = 0.005811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1110.304907 B = 4229.681213 C = 4817.651192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.214 3.786 3 H -0.005 1.005 4 C -0.501 4.501 5 H 0.062 0.938 6 C 0.059 3.941 7 N -0.893 5.893 8 Si 0.895 3.105 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.279 1.279 12 N -0.530 5.530 13 C 0.036 3.964 14 C 0.082 3.918 15 C -0.111 4.111 16 C -0.021 4.021 17 Br -0.165 7.165 18 C -0.172 4.172 19 C -0.168 4.168 20 H 0.008 0.992 21 H 0.081 0.919 22 H 0.037 0.963 23 H 0.260 0.740 24 H 0.008 0.992 25 H 0.046 0.954 26 H 0.071 0.929 27 H 0.023 0.977 28 H 0.088 0.912 29 H 0.114 0.886 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.026 -4.484 14.551 15.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.108 3.892 3 H 0.012 0.988 4 C -0.540 4.540 5 H 0.080 0.920 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.723 3.277 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.205 1.205 12 N -0.255 5.255 13 C -0.112 4.112 14 C -0.046 4.046 15 C -0.112 4.112 16 C -0.137 4.137 17 Br -0.085 7.085 18 C -0.210 4.210 19 C -0.206 4.206 20 H 0.027 0.973 21 H 0.100 0.900 22 H 0.056 0.944 23 H 0.070 0.930 24 H 0.027 0.973 25 H 0.064 0.936 26 H 0.090 0.910 27 H 0.041 0.959 28 H 0.106 0.894 29 H 0.133 0.867 30 H 0.102 0.898 31 H 0.113 0.887 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -0.924 -4.785 14.307 15.115 hybrid contribution 1.110 0.382 -0.831 1.438 sum 0.186 -4.404 13.476 14.178 Atomic orbital electron populations 1.21817 0.97463 0.99868 0.99582 1.19223 0.92449 0.91745 0.85765 0.98780 1.21104 1.30921 1.12177 0.89788 0.92016 1.24919 0.95265 0.95091 0.98945 1.69888 1.36951 1.23032 1.23402 0.86617 0.78986 0.79812 0.82289 1.20251 1.21417 1.20458 1.62039 1.08950 1.52592 1.01893 1.22255 0.89058 0.99009 1.00894 1.21686 1.01741 0.92375 0.88840 1.21498 1.00146 0.96089 0.93461 1.24022 0.86183 0.97760 1.05686 1.97316 1.13287 1.98790 1.99090 1.23046 1.01380 1.00942 0.95624 1.23091 0.91042 1.02874 1.03629 0.97270 0.90016 0.94419 0.93010 0.97334 0.93568 0.90991 0.95917 0.89394 0.86711 0.89789 0.88747 0.88871 0.89017 0.88637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.18 8.79 37.16 0.33 -2.85 16 2 C 0.21 5.37 2.06 -68.86 -0.14 5.22 16 3 H -0.01 -0.15 8.14 -51.93 -0.42 -0.57 16 4 C -0.50 -13.63 7.94 -34.44 -0.27 -13.90 16 5 H 0.06 1.67 6.40 -52.49 -0.34 1.33 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 7 N -0.89 -25.63 11.32 55.43 0.63 -25.01 16 8 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 N -0.53 -10.99 4.05 -236.29 -0.96 -11.95 16 13 C 0.04 0.70 9.00 60.07 0.54 1.24 16 14 C 0.08 1.47 4.48 -3.83 -0.02 1.45 16 15 C -0.11 -1.57 1.37 -154.51 -0.21 -1.78 16 16 C -0.02 -0.29 6.27 37.16 0.23 -0.06 16 17 Br -0.17 -2.52 33.20 -68.01 -2.26 -4.78 16 18 C -0.17 -2.03 9.97 -26.69 -0.27 -2.30 16 19 C -0.17 -2.01 8.34 -26.69 -0.22 -2.23 16 20 H 0.01 0.19 6.10 -51.93 -0.32 -0.12 16 21 H 0.08 2.22 6.07 -51.93 -0.32 1.90 16 22 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 23 H 0.26 7.15 8.31 -40.82 -0.34 6.82 16 24 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 25 H 0.05 0.74 5.96 -51.93 -0.31 0.44 16 26 H 0.07 1.48 6.29 -51.93 -0.33 1.15 16 27 H 0.02 0.41 8.01 -51.93 -0.42 0.00 16 28 H 0.09 1.69 5.15 -51.93 -0.27 1.42 16 29 H 0.11 1.78 7.83 -51.93 -0.41 1.37 16 30 H 0.08 0.96 8.11 -51.93 -0.42 0.54 16 31 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.10 1.18 8.03 -51.93 -0.42 0.76 16 LS Contribution 288.04 15.07 4.34 4.34 Total: -1.00 -27.88 288.04 -8.60 -36.48 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: -5.20 Total: -1.81 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: -0.13 Total: -13.68 kcal Atomic # 7 Polarization: -36.62 SS G_CDS: -0.33 Total: -36.95 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 35 Polarization: -2.52 SS G_CDS: -2.26 Total: -4.78 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -27.88 -8.60 -36.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083175741.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.324 kcal (2) G-P(sol) polarization free energy of solvation -27.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds