Wall clock time and date at job start Mon Mar 30 2020 07:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99484 * 2 1 4 4 H 1.48492 * 109.47243 * 240.00179 * 3 2 1 5 5 H 1.48494 * 109.47308 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46744 * 120.00377 * 3 2 1 7 7 C 1.37874 * 120.00333 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99717 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99790 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.47482 * 60.00497 * 9 7 2 11 11 O 1.42903 * 109.47374 * 300.00071 * 9 7 2 12 12 C 1.53004 * 109.47086 * 180.02562 * 9 7 2 13 13 N 1.46499 * 109.47198 * 184.99976 * 12 9 7 14 14 C 1.39746 * 119.99948 * 180.28037 * 13 12 9 15 15 C 1.38872 * 120.06893 * 359.44550 * 14 13 12 16 16 C 1.38228 * 119.91996 * 179.74787 * 15 14 13 17 17 Cl 1.73603 * 119.96219 * 180.27614 * 16 15 14 18 18 C 1.38407 * 120.07315 * 0.53256 * 16 15 14 19 19 C 1.38263 * 120.13913 * 359.72183 * 18 16 15 20 20 C 1.38213 * 120.07227 * 0.02562 * 19 18 16 21 21 Cl 1.73604 * 120.02930 * 179.97438 * 20 19 18 22 22 H 0.97002 * 120.00810 * 359.97438 * 1 2 3 23 23 H 0.96706 * 113.99936 * 300.00717 * 11 9 7 24 24 H 1.09009 * 109.46730 * 64.99763 * 12 9 7 25 25 H 1.08998 * 109.46846 * 305.00308 * 12 9 7 26 26 H 0.97001 * 119.99790 * 359.97438 * 13 12 9 27 27 H 1.07992 * 120.03727 * 359.97438 * 15 14 13 28 28 H 1.08000 * 119.93287 * 179.70160 * 18 16 15 29 29 H 1.08003 * 119.96148 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1027 1.6966 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6242 -2.5567 -0.8903 11 8 0.4300 -2.5751 1.1665 12 6 2.2454 -3.6620 -0.0005 13 7 1.5170 -4.9273 -0.1209 14 6 2.2161 -6.1373 -0.1373 15 6 3.6021 -6.1412 -0.0511 16 6 4.2902 -7.3400 -0.0623 17 17 6.0224 -7.3465 0.0526 18 6 3.6001 -8.5348 -0.1703 19 6 2.2205 -8.5339 -0.2616 20 6 1.5261 -7.3389 -0.2457 21 17 -0.2061 -7.3389 -0.3611 22 1 -0.4851 0.8400 0.0004 23 1 0.9224 -2.5298 1.9976 24 1 2.8116 -3.6559 0.9309 25 1 2.9295 -3.5551 -0.8423 26 1 0.5491 -4.9256 -0.1848 27 1 4.1414 -5.2090 0.0283 28 1 4.1403 -9.4699 -0.1837 29 1 1.6848 -9.4679 -0.3454 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213174145.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:19 Heat of formation + Delta-G solvation = -65.897414 kcal Electronic energy + Delta-G solvation = -16323.818250 eV Core-core repulsion = 13297.263987 eV Total energy + Delta-G solvation = -3026.554263 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 275.022 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.64769 -38.37185 -37.70300 -37.14661 -35.81646 -34.28428 -31.54787 -31.38776 -29.17080 -26.56206 -24.09827 -23.05582 -22.25634 -19.26445 -18.70508 -17.57191 -16.90932 -16.70039 -16.31036 -16.09064 -15.72469 -15.04155 -14.96239 -14.83111 -14.36503 -13.68512 -13.35233 -13.24577 -13.16776 -12.88859 -12.77403 -12.64576 -12.12928 -11.97990 -11.97573 -11.80444 -11.14817 -11.03720 -10.74156 -10.28799 -9.72359 -8.47019 -8.17948 -6.43966 0.02288 0.43379 1.03668 1.25811 1.42275 1.43102 1.51242 2.31182 2.51575 2.57546 3.09683 3.72698 4.14743 4.15798 4.18471 4.22816 4.41013 4.48102 4.68039 4.86946 4.91531 5.15673 5.24686 5.54306 5.57295 5.65697 5.94419 6.18426 6.61222 6.70012 7.28970 7.46653 8.86813 Molecular weight = 275.02amu Principal moments of inertia in cm(-1) A = 0.018892 B = 0.004906 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.727337 B = 5706.257675 C = 7074.118144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.028 3.972 3 Si 0.961 3.039 4 H -0.268 1.268 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.587 4.587 8 H 0.067 0.933 9 C 0.224 3.776 10 H 0.028 0.972 11 O -0.577 6.577 12 C 0.113 3.887 13 N -0.729 5.729 14 C 0.230 3.770 15 C -0.198 4.198 16 C 0.017 3.983 17 Cl -0.062 7.062 18 C -0.164 4.164 19 C -0.041 4.041 20 C -0.131 4.131 21 Cl -0.072 7.072 22 H 0.262 0.738 23 H 0.359 0.641 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.403 0.597 27 H 0.135 0.865 28 H 0.163 0.837 29 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.476 -16.949 0.051 18.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.175 4.175 3 Si 0.786 3.214 4 H -0.193 1.193 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.625 4.625 8 H 0.085 0.915 9 C 0.166 3.834 10 H 0.046 0.954 11 O -0.382 6.382 12 C -0.011 4.011 13 N -0.355 5.355 14 C 0.122 3.878 15 C -0.222 4.222 16 C -0.011 4.011 17 Cl -0.033 7.033 18 C -0.185 4.185 19 C -0.060 4.060 20 C -0.163 4.163 21 Cl -0.043 7.043 22 H 0.071 0.929 23 H 0.204 0.796 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.239 0.761 27 H 0.153 0.847 28 H 0.181 0.819 29 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 6.938 -16.669 -0.396 18.060 hybrid contribution 0.183 1.316 0.273 1.356 sum 7.121 -15.353 -0.124 16.924 Atomic orbital electron populations 1.70195 1.07686 1.27614 1.47957 1.25880 0.95463 1.02968 0.93210 0.85584 0.78310 0.78328 0.79204 1.19280 1.21253 1.19074 1.21872 0.93812 0.92024 1.54784 0.91512 1.19384 0.88115 0.90636 0.85286 0.95410 1.86515 1.39196 1.96359 1.16092 1.22088 0.95606 0.82766 1.00671 1.45083 1.09221 1.02744 1.78484 1.17663 0.91135 0.85708 0.93314 1.20480 0.91369 0.98599 1.11784 1.20781 0.84819 0.94599 1.00857 1.98369 1.09741 1.98938 1.96300 1.20974 0.93230 0.97397 1.06853 1.21027 0.93391 0.96536 0.95087 1.20631 0.84741 0.94126 1.16791 1.98349 1.10339 1.98589 1.97043 0.92891 0.79624 0.91958 0.91992 0.76098 0.84704 0.81898 0.81607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.21 12.84 21.45 0.28 -51.94 15 2 C 0.03 1.50 5.40 84.65 0.46 1.96 15 3 Si 0.96 41.94 29.54 68.60 2.03 43.97 15 4 H -0.27 -11.30 7.11 99.48 0.71 -10.59 15 5 H -0.29 -12.47 7.11 99.48 0.71 -11.77 15 6 H -0.27 -11.14 7.11 99.48 0.71 -10.44 15 7 C -0.59 -30.59 8.76 25.60 0.22 -30.37 15 8 H 0.07 3.30 7.74 -2.91 -0.02 3.28 15 9 C 0.22 10.80 2.86 29.85 0.09 10.88 15 10 H 0.03 1.53 8.14 -2.39 -0.02 1.51 15 11 O -0.58 -28.47 12.68 -148.98 -1.89 -30.36 15 12 C 0.11 4.31 4.49 86.38 0.39 4.70 15 13 N -0.73 -25.39 5.64 -339.31 -1.91 -27.30 15 14 C 0.23 6.99 6.65 38.21 0.25 7.24 15 15 C -0.20 -5.56 9.09 22.42 0.20 -5.36 15 16 C 0.02 0.40 6.32 22.31 0.14 0.54 15 17 Cl -0.06 -1.34 28.95 -2.72 -0.08 -1.42 15 18 C -0.16 -3.20 9.83 22.32 0.22 -2.98 15 19 C -0.04 -0.84 9.82 22.27 0.22 -0.62 15 20 C -0.13 -3.48 6.34 22.44 0.14 -3.34 15 21 Cl -0.07 -1.92 27.59 -2.72 -0.08 -1.99 15 22 H 0.26 14.52 8.31 -92.71 -0.77 13.75 15 23 H 0.36 15.64 9.04 -74.05 -0.67 14.98 15 24 H 0.06 2.27 7.96 -2.38 -0.02 2.25 15 25 H 0.06 2.33 7.94 -2.39 -0.02 2.31 15 26 H 0.40 14.78 7.15 -92.71 -0.66 14.12 15 27 H 0.14 3.87 6.73 -2.91 -0.02 3.85 15 28 H 0.16 2.23 8.06 -2.91 -0.02 2.21 15 29 H 0.17 2.39 8.06 -2.91 -0.02 2.36 15 Total: -1.00 -59.10 287.24 0.55 -58.55 By element: Atomic # 1 Polarization: 27.96 SS G_CDS: -0.13 Total: 27.83 kcal Atomic # 6 Polarization: -19.67 SS G_CDS: 2.33 Total: -17.34 kcal Atomic # 7 Polarization: -77.60 SS G_CDS: -1.64 Total: -79.23 kcal Atomic # 8 Polarization: -28.47 SS G_CDS: -1.89 Total: -30.36 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Atomic # 17 Polarization: -3.26 SS G_CDS: -0.15 Total: -3.41 kcal Total: -59.10 0.55 -58.55 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213174145.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.352 kcal (2) G-P(sol) polarization free energy of solvation -59.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds