Wall clock time and date at job start Mon Mar 30 2020 07:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 F 1.39895 * 109.47319 * 2 1 4 4 F 1.39904 * 109.47275 * 239.99860 * 2 1 3 5 5 C 1.50694 * 109.47201 * 120.00363 * 2 1 3 6 6 C 1.38376 * 120.00791 * 267.81885 * 5 2 1 7 7 Cl 1.73606 * 120.01024 * 0.02562 * 6 5 2 8 8 C 1.38329 * 119.97804 * 179.97438 * 6 5 2 9 9 C 1.38243 * 119.98586 * 359.77661 * 8 6 5 10 10 C 1.38220 * 120.00859 * 0.48147 * 9 8 6 11 11 C 1.38198 * 120.01153 * 87.79770 * 5 2 1 12 12 C 1.50701 * 119.98799 * 0.02562 * 11 5 2 13 13 H 1.08992 * 109.47280 * 328.74174 * 12 11 5 14 14 N 1.46899 * 109.46912 * 208.74048 * 12 11 5 15 15 C 1.50696 * 109.47163 * 88.74378 * 12 11 5 16 16 H 1.07999 * 120.00028 * 359.97438 * 15 12 11 17 17 C 1.37884 * 120.00449 * 179.97438 * 15 12 11 18 18 N 1.31507 * 120.00314 * 179.97438 * 17 15 12 19 19 Si 1.86804 * 119.99336 * 359.97438 * 17 15 12 20 20 H 1.48507 * 109.46856 * 90.00146 * 19 17 15 21 21 H 1.48495 * 109.47155 * 209.99918 * 19 17 15 22 22 H 1.48496 * 109.47464 * 330.00151 * 19 17 15 23 23 H 1.08991 * 109.47566 * 302.70047 * 1 2 3 24 24 H 1.08999 * 109.46889 * 62.70526 * 1 2 3 25 25 H 1.09008 * 109.47055 * 182.69986 * 1 2 3 26 26 H 1.07999 * 120.01210 * 180.02562 * 8 6 5 27 27 H 1.07990 * 119.99507 * 180.25032 * 9 8 6 28 28 H 1.08000 * 119.98639 * 179.77142 * 10 9 8 29 29 H 1.00893 * 111.00276 * 300.00098 * 14 12 11 30 30 H 1.00900 * 111.00242 * 63.95885 * 14 12 11 31 31 H 0.97006 * 119.99901 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 9 1.9963 1.3189 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0323 -0.7105 1.2304 6 6 2.3060 0.0078 2.3810 7 17 2.0701 1.7276 2.4078 8 6 2.7666 -0.6450 3.5102 9 6 2.9488 -2.0152 3.4901 10 6 2.6803 -2.7315 2.3388 11 6 2.2193 -2.0796 1.2100 12 6 1.9214 -2.8620 -0.0430 13 1 1.1097 -2.3801 -0.5879 14 7 1.5255 -4.2301 0.3165 15 6 3.1521 -2.9071 -0.9116 16 1 4.0591 -2.4178 -0.5887 17 6 3.1202 -3.5731 -2.1185 18 7 4.1940 -3.6121 -2.8766 19 14 1.5515 -4.4201 -2.6765 20 1 0.7276 -3.4673 -3.4632 21 1 1.8953 -5.5919 -3.5214 22 1 0.7846 -4.8741 -1.4888 23 1 -0.3634 0.5551 0.8647 24 1 -0.3633 0.4713 -0.9132 25 1 -0.3633 -1.0266 0.0484 26 1 2.9799 -0.0850 4.4087 27 1 3.3045 -2.5256 4.3728 28 1 2.8263 -3.8014 2.3223 29 1 2.2618 -4.6984 0.8230 30 1 0.6660 -4.2307 0.8452 31 1 4.1716 -4.0810 -3.7255 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260586473.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:51 Heat of formation + Delta-G solvation = -72.781514 kcal Electronic energy + Delta-G solvation = -20169.479771 eV Core-core repulsion = 16726.663405 eV Total energy + Delta-G solvation = -3442.816366 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 275.058 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.85990 -47.87123 -40.65556 -37.65534 -36.39269 -34.06014 -33.82206 -30.93363 -30.56117 -28.31800 -25.21911 -24.57687 -22.33981 -21.68582 -19.00373 -18.62203 -18.27545 -17.25151 -17.08671 -16.69236 -16.30703 -15.83096 -15.50638 -15.17954 -14.80326 -14.59996 -14.52632 -14.19306 -13.89266 -13.54920 -13.48770 -13.29190 -12.99101 -12.73491 -12.62872 -12.53996 -12.04780 -11.98993 -11.79307 -11.35787 -11.30343 -10.65854 -9.87883 -9.61801 -8.93177 -8.15933 -6.24715 0.02926 0.24563 1.06363 1.54241 1.60232 1.94932 2.52985 2.65118 2.81711 3.16409 3.26609 3.49758 3.80844 3.88579 4.04727 4.18463 4.31065 4.37312 4.50970 4.57994 4.70474 4.81886 4.88341 5.04273 5.15236 5.32350 5.45240 5.67856 5.79343 6.18499 6.51435 6.83119 7.06746 7.48658 8.98358 Molecular weight = 275.06amu Principal moments of inertia in cm(-1) A = 0.023348 B = 0.008243 C = 0.007061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.945935 B = 3395.882322 C = 3964.466623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.314 3.686 3 F -0.202 7.202 4 F -0.187 7.187 5 C -0.166 4.166 6 C -0.020 4.020 7 Cl -0.058 7.058 8 C -0.126 4.126 9 C -0.079 4.079 10 C -0.129 4.129 11 C -0.053 4.053 12 C 0.222 3.778 13 H 0.054 0.946 14 N -0.837 5.837 15 C -0.483 4.483 16 H 0.014 0.986 17 C 0.024 3.976 18 N -0.957 5.957 19 Si 0.919 3.081 20 H -0.305 1.305 21 H -0.318 1.318 22 H -0.146 1.146 23 H 0.103 0.897 24 H 0.092 0.908 25 H 0.094 0.906 26 H 0.163 0.837 27 H 0.172 0.828 28 H 0.143 0.857 29 H 0.339 0.661 30 H 0.334 0.666 31 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.503 4.997 15.448 18.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.278 3.722 3 F -0.184 7.184 4 F -0.168 7.168 5 C -0.168 4.168 6 C -0.047 4.047 7 Cl -0.029 7.029 8 C -0.145 4.145 9 C -0.097 4.097 10 C -0.147 4.147 11 C -0.055 4.055 12 C 0.112 3.888 13 H 0.072 0.928 14 N -0.369 5.369 15 C -0.521 4.521 16 H 0.032 0.968 17 C -0.173 4.173 18 N -0.597 5.597 19 Si 0.745 3.255 20 H -0.234 1.234 21 H -0.247 1.247 22 H -0.066 1.066 23 H 0.122 0.878 24 H 0.111 0.889 25 H 0.113 0.887 26 H 0.180 0.820 27 H 0.189 0.811 28 H 0.161 0.839 29 H 0.154 0.846 30 H 0.148 0.852 31 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -9.501 4.969 14.516 18.046 hybrid contribution 0.473 0.474 -0.333 0.748 sum -9.028 5.443 14.182 17.671 Atomic orbital electron populations 1.22763 0.88648 1.06176 1.06221 1.19890 0.95353 0.74578 0.82369 1.93024 1.90966 1.37507 1.96853 1.93244 1.90603 1.80068 1.52864 1.20064 1.07492 0.94868 0.94371 1.20857 1.03062 0.85320 0.95444 1.98361 1.95298 1.10627 1.98620 1.21308 1.00584 0.95274 0.97300 1.21570 0.96372 0.93044 0.98707 1.21327 0.99424 1.01667 0.92294 1.20965 0.94302 0.92502 0.97756 1.18515 0.95726 0.85655 0.88881 0.92810 1.59699 1.08349 1.17655 1.51154 1.20594 0.96043 1.32680 1.02799 0.96755 1.25802 0.99621 0.95899 0.95991 1.70112 1.31758 1.44971 1.12905 0.86497 0.81894 0.76841 0.80294 1.23372 1.24698 1.06571 0.87785 0.88921 0.88720 0.81966 0.81082 0.83905 0.84623 0.85238 0.93315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.05 9.19 71.98 0.66 -4.39 16 2 C 0.31 11.79 1.84 29.84 0.05 11.85 16 3 F -0.20 -7.71 13.78 44.97 0.62 -7.09 16 4 F -0.19 -8.96 12.25 44.97 0.55 -8.41 16 5 C -0.17 -5.94 4.99 -19.84 -0.10 -6.04 16 6 C -0.02 -0.61 6.27 22.32 0.14 -0.47 16 7 Cl -0.06 -1.63 25.74 -2.72 -0.07 -1.70 16 8 C -0.13 -3.06 9.83 22.29 0.22 -2.84 16 9 C -0.08 -1.81 10.05 22.27 0.22 -1.59 16 10 C -0.13 -3.77 9.28 22.27 0.21 -3.57 16 11 C -0.05 -1.92 4.93 -19.87 -0.10 -2.02 16 12 C 0.22 9.39 1.59 43.42 0.07 9.46 16 13 H 0.05 2.35 4.58 -2.39 -0.01 2.34 16 14 N -0.84 -29.48 5.50 -174.97 -0.96 -30.44 16 15 C -0.48 -26.91 7.33 25.60 0.19 -26.72 16 16 H 0.01 0.92 7.98 -2.91 -0.02 0.90 16 17 C 0.02 1.43 5.47 84.66 0.46 1.89 16 18 N -0.96 -61.94 13.96 21.45 0.30 -61.64 16 19 Si 0.92 44.38 26.94 68.60 1.85 46.22 16 20 H -0.31 -15.13 7.11 99.48 0.71 -14.42 16 21 H -0.32 -16.01 7.11 99.48 0.71 -15.30 16 22 H -0.15 -5.91 5.16 99.48 0.51 -5.40 16 23 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 24 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 25 H 0.09 2.51 7.22 -2.38 -0.02 2.49 16 26 H 0.16 2.87 8.06 -2.91 -0.02 2.85 16 27 H 0.17 2.49 8.06 -2.92 -0.02 2.47 16 28 H 0.14 3.73 6.35 -2.91 -0.02 3.71 16 29 H 0.34 11.30 7.18 -89.70 -0.64 10.66 16 30 H 0.33 9.32 9.06 -89.69 -0.81 8.50 16 31 H 0.26 15.96 8.31 -92.70 -0.77 15.19 16 Total: -1.00 -72.63 271.40 3.86 -68.77 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: -0.46 Total: 18.72 kcal Atomic # 6 Polarization: -26.46 SS G_CDS: 2.03 Total: -24.43 kcal Atomic # 7 Polarization: -91.42 SS G_CDS: -0.66 Total: -92.08 kcal Atomic # 9 Polarization: -16.67 SS G_CDS: 1.17 Total: -15.50 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.85 Total: 46.22 kcal Atomic # 17 Polarization: -1.63 SS G_CDS: -0.07 Total: -1.70 kcal Total: -72.63 3.86 -68.77 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260586473.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.011 kcal (2) G-P(sol) polarization free energy of solvation -72.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds