Wall clock time and date at job start Mon Mar 30 2020 07:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35970 * 116.99701 * 2 1 4 4 C 1.38805 * 120.02873 * 270.29691 * 3 2 1 5 5 F 1.35106 * 120.06098 * 359.97438 * 4 3 2 6 6 C 1.38730 * 119.87857 * 180.27246 * 4 3 2 7 7 O 1.35977 * 120.03399 * 179.70245 * 6 4 3 8 8 C 1.38822 * 119.92178 * 359.72540 * 6 4 3 9 9 Cl 1.73606 * 119.97435 * 179.97438 * 8 6 4 10 10 C 1.38253 * 120.05288 * 359.97438 * 8 6 4 11 11 C 1.38245 * 120.12014 * 0.02562 * 10 8 6 12 12 C 1.50701 * 119.96068 * 180.02562 * 11 10 8 13 13 H 1.09002 * 109.47060 * 145.00412 * 12 11 10 14 14 N 1.46901 * 109.46921 * 25.00231 * 12 11 10 15 15 C 1.50699 * 109.47269 * 265.00265 * 12 11 10 16 16 H 1.08000 * 119.99792 * 0.02562 * 15 12 11 17 17 C 1.37878 * 119.99902 * 179.97438 * 15 12 11 18 18 N 1.31515 * 120.00126 * 0.02562 * 17 15 12 19 19 Si 1.86803 * 119.99745 * 180.02562 * 17 15 12 20 20 H 1.48501 * 109.47438 * 0.02562 * 19 17 15 21 21 H 1.48491 * 109.47045 * 120.00577 * 19 17 15 22 22 H 1.48501 * 109.46950 * 240.00369 * 19 17 15 23 23 H 1.09004 * 109.47078 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47155 * 299.99685 * 1 2 3 25 25 H 1.08997 * 109.47151 * 60.00466 * 1 2 3 26 26 H 0.96704 * 114.00639 * 270.01772 * 7 6 4 27 27 H 1.08004 * 119.94149 * 180.02562 * 10 8 6 28 28 H 1.00901 * 110.99547 * 176.04411 * 14 12 11 29 29 H 1.00898 * 111.00245 * 299.99784 * 14 12 11 30 30 H 0.96999 * 120.00073 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 2.3560 1.8333 -1.2017 5 9 2.0453 1.2355 -2.3728 6 6 2.9909 3.0668 -1.1981 7 8 3.3013 3.6759 -2.3735 8 6 3.3093 3.6782 0.0068 9 17 4.1044 5.2215 0.0129 10 6 2.9938 3.0591 1.2020 11 6 2.3612 1.8299 1.2007 12 6 2.0184 1.1585 2.5057 13 1 1.0774 0.6185 2.4003 14 7 1.8849 2.1741 3.5586 15 6 3.1134 0.1917 2.8761 16 1 3.9720 0.0754 2.2313 17 6 3.0197 -0.5435 4.0387 18 7 1.9745 -0.4015 4.8241 19 14 4.3775 -1.7414 4.4982 20 1 5.4350 -1.7146 3.4560 21 1 4.9618 -1.3493 5.8058 22 1 3.8153 -3.1122 4.5984 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 4.1764 3.4477 -2.7159 27 1 3.2420 3.5366 2.1385 28 1 1.5923 1.7561 4.4291 29 1 2.7449 2.6887 3.6757 30 1 1.9084 -0.9191 5.6419 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260651534.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:05 Heat of formation + Delta-G solvation = -125.322160 kcal Electronic energy + Delta-G solvation = -19502.550574 eV Core-core repulsion = 16045.083085 eV Total energy + Delta-G solvation = -3457.467489 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 275.051 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -50.04354 -41.23745 -39.44553 -37.81339 -37.45525 -35.99417 -33.36372 -31.10452 -30.26729 -28.14656 -27.66498 -25.01075 -23.70753 -22.13801 -19.98379 -18.76701 -18.63525 -18.20165 -18.00849 -17.08252 -16.80004 -16.41914 -16.17705 -15.71403 -15.62112 -14.98095 -14.74400 -14.44408 -14.28685 -13.89567 -13.32026 -13.22145 -12.89043 -12.81504 -12.75908 -12.33304 -12.14879 -11.87847 -11.70371 -11.65765 -11.01953 -10.71043 -9.72406 -9.59589 -9.21264 -8.13602 -6.36008 -0.27024 -0.10848 0.91810 1.36860 1.41402 1.51159 2.09428 2.39189 2.50181 2.94163 3.06680 3.21134 3.66457 3.92047 4.26515 4.31462 4.40986 4.47904 4.52637 4.68994 4.77667 4.94159 4.99023 5.36534 5.64525 5.65106 5.99837 6.37408 6.55525 6.61780 6.87033 7.08904 7.38125 8.82404 Molecular weight = 275.05amu Principal moments of inertia in cm(-1) A = 0.018356 B = 0.006932 C = 0.005832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.051225 B = 4038.264448 C = 4799.726777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.337 6.337 3 C 0.069 3.931 4 C 0.054 3.946 5 F -0.127 7.127 6 C 0.085 3.915 7 O -0.477 6.477 8 C -0.039 4.039 9 Cl -0.032 7.032 10 C -0.082 4.082 11 C -0.040 4.040 12 C 0.253 3.747 13 H 0.030 0.970 14 N -0.842 5.842 15 C -0.548 4.548 16 H 0.044 0.956 17 C 0.028 3.972 18 N -0.912 5.912 19 Si 0.954 3.046 20 H -0.275 1.275 21 H -0.276 1.276 22 H -0.282 1.282 23 H 0.114 0.886 24 H 0.043 0.957 25 H 0.057 0.943 26 H 0.411 0.589 27 H 0.155 0.845 28 H 0.351 0.649 29 H 0.321 0.679 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.895 6.659 -9.272 11.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.254 6.254 3 C 0.024 3.976 4 C 0.033 3.967 5 F -0.106 7.106 6 C 0.037 3.963 7 O -0.289 6.289 8 C -0.067 4.067 9 Cl -0.003 7.003 10 C -0.101 4.101 11 C -0.041 4.041 12 C 0.142 3.858 13 H 0.048 0.952 14 N -0.372 5.372 15 C -0.588 4.588 16 H 0.062 0.938 17 C -0.172 4.172 18 N -0.552 5.552 19 Si 0.780 3.220 20 H -0.200 1.200 21 H -0.201 1.201 22 H -0.208 1.208 23 H 0.132 0.868 24 H 0.061 0.939 25 H 0.076 0.924 26 H 0.270 0.730 27 H 0.173 0.827 28 H 0.166 0.834 29 H 0.132 0.868 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.819 7.102 -9.572 11.948 hybrid contribution 1.576 -1.517 0.596 2.267 sum 2.395 5.585 -8.976 10.840 Atomic orbital electron populations 1.23178 0.77383 1.04801 1.00749 1.86083 1.21514 1.23647 1.94117 1.18564 1.00620 0.87876 0.90580 1.18171 1.05394 0.92089 0.81037 1.91455 1.91131 1.83060 1.44918 1.17587 1.02211 0.90159 0.86293 1.84837 1.41430 1.68594 1.34071 1.21033 1.01904 0.90672 0.93086 1.98356 1.77676 1.25474 1.98818 1.20850 0.97628 0.94040 0.97581 1.20573 0.95003 0.92984 0.95564 1.17650 0.95166 0.88131 0.84804 0.95180 1.59546 1.35702 1.28978 1.13014 1.21855 1.06193 1.24191 1.06551 0.93807 1.25596 0.97646 0.97759 0.96223 1.69808 1.29346 1.42357 1.13656 0.85570 0.79508 0.78919 0.77995 1.19964 1.20140 1.20768 0.86750 0.93864 0.92444 0.72969 0.82743 0.83390 0.86802 0.92225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.06 10.80 113.37 1.22 2.28 16 2 O -0.34 -13.84 9.55 -93.21 -0.89 -14.73 16 3 C 0.07 2.76 5.70 22.51 0.13 2.89 16 4 C 0.05 1.89 7.32 22.52 0.16 2.06 16 5 F -0.13 -4.38 16.95 44.97 0.76 -3.61 16 6 C 0.08 2.61 6.70 22.53 0.15 2.76 16 7 O -0.48 -12.01 12.82 -93.29 -1.20 -13.21 16 8 C -0.04 -1.22 6.33 22.41 0.14 -1.08 16 9 Cl -0.03 -0.83 28.50 -2.72 -0.08 -0.91 16 10 C -0.08 -2.89 9.04 22.28 0.20 -2.69 16 11 C -0.04 -1.63 5.01 -19.76 -0.10 -1.73 16 12 C 0.25 12.00 2.66 43.42 0.12 12.11 16 13 H 0.03 1.60 6.41 -2.39 -0.02 1.59 16 14 N -0.84 -37.29 8.79 -174.95 -1.54 -38.83 16 15 C -0.55 -28.56 8.71 25.60 0.22 -28.34 16 16 H 0.04 2.35 7.74 -2.91 -0.02 2.33 16 17 C 0.03 1.47 5.38 84.65 0.46 1.93 16 18 N -0.91 -48.25 11.54 21.45 0.25 -48.00 16 19 Si 0.95 41.95 29.54 68.60 2.03 43.97 16 20 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 21 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 22 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 23 H 0.11 3.16 8.14 -2.39 -0.02 3.14 16 24 H 0.04 1.49 7.17 -2.39 -0.02 1.47 16 25 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.41 6.44 9.06 -74.05 -0.67 5.77 16 27 H 0.16 5.17 6.28 -2.91 -0.02 5.15 16 28 H 0.35 16.85 7.08 -89.69 -0.63 16.21 16 29 H 0.32 13.15 7.20 -89.70 -0.65 12.50 16 30 H 0.27 13.52 8.31 -92.71 -0.77 12.75 16 Total: -1.00 -57.97 282.18 1.33 -56.64 By element: Atomic # 1 Polarization: 29.19 SS G_CDS: -0.71 Total: 28.47 kcal Atomic # 6 Polarization: -12.51 SS G_CDS: 2.71 Total: -9.80 kcal Atomic # 7 Polarization: -85.53 SS G_CDS: -1.29 Total: -86.82 kcal Atomic # 8 Polarization: -25.85 SS G_CDS: -2.09 Total: -27.94 kcal Atomic # 9 Polarization: -4.38 SS G_CDS: 0.76 Total: -3.61 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.97 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -0.08 Total: -0.91 kcal Total: -57.97 1.33 -56.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260651534.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.683 kcal (2) G-P(sol) polarization free energy of solvation -57.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds