Wall clock time and date at job start Mon Mar 30 2020 07:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 119.99822 * 2 1 4 4 H 1.48503 * 109.46892 * 269.99642 * 3 2 1 5 5 H 1.48502 * 109.47277 * 29.99520 * 3 2 1 6 6 H 1.48495 * 109.47059 * 149.99962 * 3 2 1 7 7 C 1.37875 * 120.00091 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99829 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00194 * 0.02562 * 7 2 1 10 10 C 1.52993 * 109.47134 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.47404 * 305.00291 * 10 9 7 12 12 N 1.46909 * 109.47288 * 65.00118 * 10 9 7 13 13 C 1.50700 * 109.47406 * 184.99996 * 10 9 7 14 14 C 1.38262 * 119.99159 * 264.98167 * 13 10 9 15 15 C 1.38224 * 120.02169 * 180.02562 * 14 13 10 16 16 C 1.38230 * 120.01407 * 359.95682 * 15 14 13 17 17 C 1.38331 * 119.99156 * 359.76766 * 16 15 14 18 18 Cl 1.73598 * 120.01849 * 180.27282 * 17 16 15 19 19 C 1.38193 * 119.99307 * 84.99548 * 13 10 9 20 20 C 1.50703 * 120.00576 * 359.97438 * 19 13 10 21 21 F 1.39904 * 109.46969 * 59.99562 * 20 19 13 22 22 F 1.39901 * 109.47086 * 299.99966 * 20 19 13 23 23 H 0.97001 * 120.00108 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.46606 * 59.99648 * 9 7 2 25 25 H 1.09000 * 109.46973 * 300.00012 * 9 7 2 26 26 H 1.00896 * 110.99831 * 59.99927 * 12 10 9 27 27 H 1.00896 * 110.99870 * 183.95468 * 12 10 9 28 28 H 1.08000 * 119.99295 * 0.02562 * 14 13 10 29 29 H 1.08006 * 119.99271 * 179.97438 * 15 14 13 30 30 H 1.08003 * 120.00483 * 180.02562 * 16 15 14 31 31 H 1.09002 * 109.47152 * 179.97438 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6528 0.6999 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 1 2.9295 -3.5551 -0.8413 12 7 3.0084 -3.6539 1.2558 13 6 1.4960 -4.9637 -0.1233 14 6 1.1640 -5.6807 1.0113 15 6 0.4772 -6.8749 0.8984 16 6 0.1212 -7.3526 -0.3489 17 6 0.4481 -6.6328 -1.4841 18 17 -0.0048 -7.2286 -3.0505 19 6 1.1412 -5.4406 -1.3709 20 6 1.5030 -4.6588 -2.6074 21 9 2.8932 -4.5201 -2.6814 22 9 0.9106 -3.3927 -2.5486 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6240 -2.5567 0.8903 26 1 2.3962 -3.7517 2.0518 27 1 3.7161 -4.3730 1.2534 28 1 1.4413 -5.3075 1.9861 29 1 0.2185 -7.4348 1.7850 30 1 -0.4157 -8.2855 -0.4369 31 1 1.1435 -5.1879 -3.4900 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260662043.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:01 Heat of formation + Delta-G solvation = -81.246012 kcal Electronic energy + Delta-G solvation = -19570.115326 eV Core-core repulsion = 16126.931911 eV Total energy + Delta-G solvation = -3443.183414 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 275.058 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.65331 -46.55831 -39.66439 -36.87459 -35.32317 -32.42501 -32.06920 -29.91537 -28.31479 -26.05711 -24.51106 -22.39363 -21.70342 -19.80583 -17.61891 -17.36048 -16.80388 -16.31094 -15.82471 -15.33556 -14.90337 -14.56858 -14.29969 -13.92290 -13.67799 -13.35556 -13.22694 -12.87133 -12.39221 -12.21016 -12.04399 -11.69223 -11.60116 -11.39912 -11.02400 -10.82711 -10.51707 -10.21001 -10.10328 -9.65426 -8.98459 -8.97792 -8.52259 -8.20327 -8.06294 -5.84297 -3.81644 0.96171 1.19402 1.88373 3.43120 3.48136 3.49013 3.54397 3.90440 4.37434 4.56999 4.63514 4.85581 4.98336 5.14054 5.28737 5.33378 5.41889 5.50050 5.55044 5.76960 6.02072 6.13458 6.24522 6.45078 6.65839 6.84492 7.61612 7.72431 7.99893 8.08953 8.17463 8.58690 9.23016 9.78753 11.27702 Molecular weight = 275.06amu Principal moments of inertia in cm(-1) A = 0.024245 B = 0.006139 C = 0.005584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.618857 B = 4559.971449 C = 5013.073523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.051 3.949 3 Si 0.891 3.109 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.274 1.274 7 C -0.488 4.488 8 H 0.061 0.939 9 C 0.024 3.976 10 C 0.116 3.884 11 H 0.095 0.905 12 N -0.817 5.817 13 C -0.042 4.042 14 C -0.127 4.127 15 C -0.083 4.083 16 C -0.131 4.131 17 C -0.001 4.001 18 Cl -0.068 7.068 19 C -0.161 4.161 20 C 0.307 3.693 21 F -0.196 7.196 22 F -0.169 7.169 23 H 0.257 0.743 24 H 0.049 0.951 25 H 0.012 0.988 26 H 0.334 0.666 27 H 0.323 0.677 28 H 0.132 0.868 29 H 0.134 0.866 30 H 0.135 0.865 31 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.430 -16.913 -2.012 17.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.148 4.148 3 Si 0.719 3.281 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.199 1.199 7 C -0.527 4.527 8 H 0.079 0.921 9 C -0.013 4.013 10 C 0.004 3.996 11 H 0.113 0.887 12 N -0.345 5.345 13 C -0.045 4.045 14 C -0.145 4.145 15 C -0.102 4.102 16 C -0.150 4.150 17 C -0.028 4.028 18 Cl -0.039 7.039 19 C -0.164 4.164 20 C 0.253 3.747 21 F -0.177 7.177 22 F -0.150 7.150 23 H 0.066 0.934 24 H 0.067 0.933 25 H 0.030 0.970 26 H 0.148 0.852 27 H 0.134 0.866 28 H 0.150 0.850 29 H 0.152 0.848 30 H 0.153 0.847 31 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 0.499 -16.038 -2.352 16.217 hybrid contribution -0.092 -0.076 0.081 0.144 sum 0.407 -16.113 -2.271 16.278 Atomic orbital electron populations 1.69970 1.05948 1.26202 1.52155 1.24979 0.94787 0.99020 0.96048 0.86610 0.79882 0.83699 0.77885 1.20935 1.21583 1.19906 1.21086 0.93241 0.89941 1.48424 0.92118 1.19492 0.93011 0.90122 0.98628 1.21229 0.95562 0.89578 0.93263 0.88718 1.58795 1.17629 1.54288 1.03765 1.21464 0.94473 0.97518 0.91051 1.21152 0.99548 0.95045 0.98797 1.21173 0.96359 0.95722 0.96903 1.20901 1.02554 1.00689 0.90824 1.20678 1.00361 0.94925 0.86821 1.98357 1.91225 1.87496 1.26858 1.20067 1.04391 0.95997 0.95903 1.20347 0.75143 0.82109 0.97078 1.92965 1.31295 1.96250 1.97181 1.93121 1.83068 1.41732 1.97041 0.93353 0.93287 0.97016 0.85178 0.86557 0.85006 0.84841 0.84679 0.87008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.64 13.29 55.43 0.74 -26.91 16 2 C 0.05 1.50 5.46 -17.82 -0.10 1.40 16 3 Si 0.89 22.53 29.54 -169.99 -5.02 17.51 16 4 H -0.28 -7.09 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.49 -14.03 8.84 -34.44 -0.30 -14.34 16 8 H 0.06 1.75 7.74 -52.48 -0.41 1.35 16 9 C 0.02 0.63 4.32 -27.88 -0.12 0.51 16 10 C 0.12 2.37 2.27 -68.86 -0.16 2.21 16 11 H 0.10 2.08 5.75 -51.93 -0.30 1.78 16 12 N -0.82 -14.91 8.54 -5.65 -0.05 -14.96 16 13 C -0.04 -0.73 5.01 -104.63 -0.52 -1.25 16 14 C -0.13 -1.80 9.27 -39.58 -0.37 -2.17 16 15 C -0.08 -0.97 10.05 -39.59 -0.40 -1.37 16 16 C -0.13 -1.55 9.83 -39.55 -0.39 -1.94 16 17 C 0.00 -0.01 6.31 -39.50 -0.25 -0.26 16 18 Cl -0.07 -0.82 27.01 -51.86 -1.40 -2.22 16 19 C -0.16 -2.66 5.37 -104.59 -0.56 -3.22 16 20 C 0.31 5.23 4.86 36.01 0.18 5.41 16 21 F -0.20 -3.50 15.35 2.25 0.03 -3.46 16 22 F -0.17 -3.56 13.64 2.25 0.03 -3.53 16 23 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 24 H 0.05 1.35 5.14 -51.93 -0.27 1.09 16 25 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.33 5.64 7.21 -39.29 -0.28 5.36 16 27 H 0.32 4.92 9.06 -39.29 -0.36 4.56 16 28 H 0.13 1.67 6.29 -52.49 -0.33 1.34 16 29 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 30 H 0.14 1.24 8.06 -52.48 -0.42 0.81 16 31 H 0.11 1.57 6.17 -51.93 -0.32 1.25 16 LS Contribution 280.20 15.07 4.22 4.22 Total: -1.00 -31.95 280.20 -7.10 -39.05 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -2.66 Total: 5.32 kcal Atomic # 6 Polarization: -12.03 SS G_CDS: -2.99 Total: -15.03 kcal Atomic # 7 Polarization: -42.55 SS G_CDS: 0.69 Total: -41.86 kcal Atomic # 9 Polarization: -7.06 SS G_CDS: 0.07 Total: -6.99 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -1.40 Total: -2.22 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -31.95 -7.10 -39.05 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260662043.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.194 kcal (2) G-P(sol) polarization free energy of solvation -31.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds