Wall clock time and date at job start Mon Mar 30 2020 07:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 119.99822 * 2 1 4 4 H 1.48503 * 109.46892 * 269.99642 * 3 2 1 5 5 H 1.48502 * 109.47277 * 29.99520 * 3 2 1 6 6 H 1.48495 * 109.47059 * 149.99962 * 3 2 1 7 7 C 1.37875 * 120.00091 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99829 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00194 * 0.02562 * 7 2 1 10 10 C 1.52993 * 109.47134 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.47404 * 305.00291 * 10 9 7 12 12 N 1.46909 * 109.47288 * 65.00118 * 10 9 7 13 13 C 1.50700 * 109.47406 * 184.99996 * 10 9 7 14 14 C 1.38262 * 119.99159 * 264.98167 * 13 10 9 15 15 C 1.38224 * 120.02169 * 180.02562 * 14 13 10 16 16 C 1.38230 * 120.01407 * 359.95682 * 15 14 13 17 17 C 1.38331 * 119.99156 * 359.76766 * 16 15 14 18 18 Cl 1.73598 * 120.01849 * 180.27282 * 17 16 15 19 19 C 1.38193 * 119.99307 * 84.99548 * 13 10 9 20 20 C 1.50703 * 120.00576 * 359.97438 * 19 13 10 21 21 F 1.39904 * 109.46969 * 59.99562 * 20 19 13 22 22 F 1.39901 * 109.47086 * 299.99966 * 20 19 13 23 23 H 0.97001 * 120.00108 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.46606 * 59.99648 * 9 7 2 25 25 H 1.09000 * 109.46973 * 300.00012 * 9 7 2 26 26 H 1.00896 * 110.99831 * 59.99927 * 12 10 9 27 27 H 1.00896 * 110.99870 * 183.95468 * 12 10 9 28 28 H 1.08000 * 119.99295 * 0.02562 * 14 13 10 29 29 H 1.08006 * 119.99271 * 179.97438 * 15 14 13 30 30 H 1.08003 * 120.00483 * 180.02562 * 16 15 14 31 31 H 1.09002 * 109.47152 * 179.97438 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6528 0.6999 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 1 2.9295 -3.5551 -0.8413 12 7 3.0084 -3.6539 1.2558 13 6 1.4960 -4.9637 -0.1233 14 6 1.1640 -5.6807 1.0113 15 6 0.4772 -6.8749 0.8984 16 6 0.1212 -7.3526 -0.3489 17 6 0.4481 -6.6328 -1.4841 18 17 -0.0048 -7.2286 -3.0505 19 6 1.1412 -5.4406 -1.3709 20 6 1.5030 -4.6588 -2.6074 21 9 2.8932 -4.5201 -2.6814 22 9 0.9106 -3.3927 -2.5486 23 1 -0.4850 0.8400 -0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6240 -2.5567 0.8903 26 1 2.3962 -3.7517 2.0518 27 1 3.7161 -4.3730 1.2534 28 1 1.4413 -5.3075 1.9861 29 1 0.2185 -7.4348 1.7850 30 1 -0.4157 -8.2855 -0.4369 31 1 1.1435 -5.1879 -3.4900 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260662043.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:01 Heat of formation + Delta-G solvation = -101.974945 kcal Electronic energy + Delta-G solvation = -19571.014200 eV Core-core repulsion = 16126.931911 eV Total energy + Delta-G solvation = -3444.082288 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 275.058 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -50.08785 -48.02826 -40.81046 -37.96752 -36.77333 -34.53540 -33.20514 -31.10717 -30.24797 -27.38661 -26.18416 -23.98294 -22.91646 -21.31560 -18.92851 -18.77942 -18.25052 -18.17243 -17.08546 -16.91218 -16.39794 -16.04565 -15.69448 -15.36059 -15.01518 -14.68959 -14.54081 -14.36584 -14.17731 -13.85658 -13.31685 -13.04596 -12.90577 -12.85046 -12.54172 -12.49288 -12.37031 -12.00506 -11.55443 -11.48093 -11.08710 -10.45381 -10.08404 -9.76964 -9.50250 -8.09148 -6.13503 -0.11565 0.09493 0.85659 1.41056 1.42370 1.53863 2.40237 2.48877 2.67569 3.11744 3.24460 3.42081 3.72418 3.80937 3.93334 3.97487 4.24857 4.27922 4.39904 4.53294 4.68146 4.94651 5.00088 5.18510 5.31478 5.58487 5.65812 5.74328 5.89824 6.31155 6.47577 6.77334 6.99051 7.50937 9.02819 Molecular weight = 275.06amu Principal moments of inertia in cm(-1) A = 0.024245 B = 0.006139 C = 0.005584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.618857 B = 4559.971449 C = 5013.073523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.004 4.004 3 Si 0.956 3.044 4 H -0.278 1.278 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.502 4.502 8 H 0.053 0.947 9 C 0.033 3.967 10 C 0.131 3.869 11 H 0.073 0.927 12 N -0.826 5.826 13 C -0.072 4.072 14 C -0.131 4.131 15 C -0.070 4.070 16 C -0.118 4.118 17 C -0.008 4.008 18 Cl -0.053 7.053 19 C -0.180 4.180 20 C 0.298 3.702 21 F -0.204 7.204 22 F -0.198 7.198 23 H 0.258 0.742 24 H 0.027 0.973 25 H -0.015 1.015 26 H 0.342 0.658 27 H 0.342 0.658 28 H 0.143 0.857 29 H 0.177 0.823 30 H 0.171 0.829 31 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.411 -18.865 -1.288 18.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.200 4.200 3 Si 0.782 3.218 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.191 1.191 7 C -0.540 4.540 8 H 0.071 0.929 9 C -0.004 4.004 10 C 0.019 3.981 11 H 0.091 0.909 12 N -0.356 5.356 13 C -0.075 4.075 14 C -0.150 4.150 15 C -0.087 4.087 16 C -0.136 4.136 17 C -0.035 4.035 18 Cl -0.024 7.024 19 C -0.183 4.183 20 C 0.244 3.756 21 F -0.186 7.186 22 F -0.180 7.180 23 H 0.067 0.933 24 H 0.045 0.955 25 H 0.003 0.997 26 H 0.157 0.843 27 H 0.155 0.845 28 H 0.161 0.839 29 H 0.194 0.806 30 H 0.189 0.811 31 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 0.497 -18.009 -1.628 18.089 hybrid contribution -0.117 0.408 -0.164 0.455 sum 0.380 -17.601 -1.792 17.696 Atomic orbital electron populations 1.70096 1.07444 1.27094 1.53221 1.25829 0.95675 1.02727 0.95795 0.85574 0.78753 0.79350 0.78098 1.20360 1.20863 1.19149 1.21423 0.93082 0.91647 1.47869 0.92861 1.19256 0.93428 0.91622 0.96141 1.20591 0.94295 0.89809 0.93439 0.90916 1.58645 1.18174 1.55604 1.03206 1.21125 0.96534 0.97006 0.92793 1.21373 0.99592 0.95829 0.98157 1.21643 0.94144 0.94459 0.98485 1.21407 1.00982 1.01246 0.89991 1.20816 0.99993 0.94313 0.88381 1.98362 1.90968 1.87043 1.26009 1.20058 1.05874 0.97241 0.95082 1.20816 0.74569 0.81019 0.99156 1.92934 1.32056 1.96239 1.97327 1.93049 1.83588 1.44051 1.97267 0.93280 0.95511 0.99652 0.84325 0.84455 0.83898 0.80560 0.81114 0.84194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.89 13.29 21.45 0.28 -58.60 16 2 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 3 Si 0.96 46.94 29.54 68.60 2.03 48.97 16 4 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 5 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 6 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 7 C -0.50 -29.72 8.84 25.60 0.23 -29.49 16 8 H 0.05 3.16 7.74 -2.91 -0.02 3.13 16 9 C 0.03 1.75 4.32 29.85 0.13 1.88 16 10 C 0.13 5.51 2.27 44.16 0.10 5.61 16 11 H 0.07 3.34 5.75 -2.39 -0.01 3.33 16 12 N -0.83 -30.27 8.54 -171.79 -1.47 -31.74 16 13 C -0.07 -2.47 5.01 -19.87 -0.10 -2.57 16 14 C -0.13 -3.47 9.27 22.27 0.21 -3.27 16 15 C -0.07 -1.34 10.05 22.26 0.22 -1.12 16 16 C -0.12 -2.33 9.83 22.29 0.22 -2.11 16 17 C -0.01 -0.21 6.31 22.32 0.14 -0.07 16 18 Cl -0.05 -1.16 27.01 -2.72 -0.07 -1.23 16 19 C -0.18 -5.88 5.37 -19.84 -0.11 -5.98 16 20 C 0.30 10.38 4.86 71.24 0.35 10.73 16 21 F -0.20 -7.54 15.35 44.97 0.69 -6.85 16 22 F -0.20 -8.82 13.64 44.97 0.61 -8.21 16 23 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 24 H 0.03 1.56 5.14 -2.39 -0.01 1.55 16 25 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 26 H 0.34 11.49 7.21 -89.70 -0.65 10.84 16 27 H 0.34 10.23 9.06 -89.70 -0.81 9.41 16 28 H 0.14 3.36 6.29 -2.91 -0.02 3.34 16 29 H 0.18 1.93 8.06 -2.91 -0.02 1.91 16 30 H 0.17 2.18 8.06 -2.91 -0.02 2.16 16 31 H 0.14 3.92 6.17 -2.39 -0.01 3.91 16 Total: -1.00 -71.56 280.20 3.66 -67.89 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -0.26 Total: 15.94 kcal Atomic # 6 Polarization: -28.03 SS G_CDS: 1.85 Total: -26.18 kcal Atomic # 7 Polarization: -89.16 SS G_CDS: -1.18 Total: -90.34 kcal Atomic # 9 Polarization: -16.36 SS G_CDS: 1.30 Total: -15.06 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 2.03 Total: 48.97 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -0.07 Total: -1.23 kcal Total: -71.56 3.66 -67.89 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260662043.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.081 kcal (2) G-P(sol) polarization free energy of solvation -71.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds