Wall clock time and date at job start Mon Mar 30 2020 06:56:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.76203 * 103.00026 * 2 1 4 4 C 1.37530 * 120.38765 * 359.97438 * 3 2 1 5 5 C 1.40980 * 120.69744 * 179.97438 * 4 3 2 6 6 C 1.46209 * 128.79829 * 180.02562 * 5 4 3 7 7 C 1.43198 * 123.07832 * 359.97438 * 6 5 4 8 8 N 6.20660 * 52.71043 * 359.97438 * 2 1 3 9 9 C 1.35168 * 113.84010 * 179.97438 * 6 5 4 10 10 S 1.69940 * 112.18588 * 0.02562 * 9 6 5 11 11 C 1.40096 * 120.19255 * 359.97438 * 5 4 3 12 12 C 1.38932 * 120.50396 * 0.02562 * 11 5 4 13 13 C 1.40306 * 120.38927 * 359.71957 * 12 11 5 14 14 C 1.40794 * 120.50332 * 180.25578 * 13 12 11 15 15 H 1.07996 * 119.99884 * 205.08895 * 14 13 12 16 16 C 1.39886 * 119.99813 * 25.09113 * 14 13 12 17 17 N 1.30913 * 119.99901 * 17.40436 * 16 14 13 18 18 Si 1.86793 * 119.99712 * 197.40432 * 16 14 13 19 19 H 1.48499 * 109.47194 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46907 * 119.99811 * 18 16 14 21 21 H 1.48502 * 109.47237 * 239.99685 * 18 16 14 22 22 H 1.08996 * 109.46945 * 299.99888 * 1 2 3 23 23 H 1.08997 * 109.47160 * 60.00489 * 1 2 3 24 24 H 1.09000 * 109.46599 * 179.97438 * 1 2 3 25 25 H 1.07997 * 119.64900 * 359.97438 * 4 3 2 26 26 H 1.07998 * 123.90246 * 180.02562 * 9 6 5 27 27 H 1.08001 * 119.80754 * 180.02562 * 12 11 5 28 28 H 0.97005 * 119.99925 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.2109 2.6616 -0.0005 5 6 1.5206 4.0370 0.0000 6 6 0.6102 5.1810 0.0001 7 6 -0.8153 5.0454 -0.0009 8 7 -1.9463 4.9379 -0.0022 9 6 1.2374 6.3784 0.0012 10 16 2.9291 6.2166 0.0015 11 6 2.8567 4.4583 0.0016 12 6 3.8893 3.5288 0.0022 13 6 3.6070 2.1544 0.0071 14 6 4.6516 1.2103 0.0131 15 1 4.4850 0.2183 -0.3799 16 6 5.9050 1.5574 0.5281 17 7 6.0273 2.6069 1.3011 18 14 7.4042 0.5233 0.1129 19 1 7.0017 -0.5989 -0.7725 20 1 8.4095 1.3662 -0.5830 21 1 7.9933 -0.0190 1.3636 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3632 -1.0277 -0.0005 25 1 0.1779 2.3465 -0.0014 26 1 0.7230 7.3279 0.0019 27 1 4.9153 3.8661 0.0039 28 1 6.8966 2.8477 1.6579 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396210281.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:35 Heat of formation + Delta-G solvation = 54.294048 kcal Electronic energy + Delta-G solvation = -15611.916982 eV Core-core repulsion = 13037.804038 eV Total energy + Delta-G solvation = -2574.112944 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 275.013 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.30939 -36.33840 -34.79051 -33.09870 -30.25279 -29.31564 -28.16405 -25.54952 -23.94695 -21.64921 -21.02076 -17.91580 -17.33273 -16.40606 -15.81485 -15.38492 -14.36205 -14.12040 -13.85296 -13.69281 -13.26728 -13.13469 -12.92489 -12.73931 -12.39771 -12.21839 -11.92807 -11.63654 -11.42423 -11.27562 -10.98651 -10.68494 -10.46407 -10.34020 -9.79092 -9.50631 -9.32858 -8.83795 -8.09512 -7.25334 -7.15452 -6.45373 -4.64375 1.28379 2.22306 2.25377 2.38357 2.61735 2.68311 2.91102 2.93614 2.98158 3.10320 3.34623 3.67391 3.80937 4.27222 4.61774 5.12321 5.34247 5.46186 5.47192 5.70823 6.00993 6.14452 6.33477 6.48630 6.63568 6.78479 6.93265 7.15150 7.40664 7.46308 7.65094 7.87365 8.12570 8.37665 8.42887 9.74260 Molecular weight = 275.01amu Principal moments of inertia in cm(-1) A = 0.016554 B = 0.007500 C = 0.005245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.072019 B = 3732.527451 C = 5337.562269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 S -0.114 6.114 3 C -0.160 4.160 4 C -0.063 4.063 5 C -0.168 4.168 6 C -0.009 4.009 7 C 0.288 3.712 8 N -0.451 5.451 9 C -0.232 4.232 10 S 0.117 5.883 11 C -0.087 4.087 12 C -0.152 4.152 13 C 0.148 3.852 14 C -0.415 4.415 15 H 0.095 0.905 16 C 0.072 3.928 17 N -0.763 5.763 18 Si 0.916 3.084 19 H -0.254 1.254 20 H -0.267 1.267 21 H -0.270 1.270 22 H 0.074 0.926 23 H 0.073 0.927 24 H 0.095 0.905 25 H 0.099 0.901 26 H 0.157 0.843 27 H 0.132 0.868 28 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.269 0.939 -1.527 1.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.321 4.321 2 S 0.127 5.873 3 C -0.273 4.273 4 C -0.090 4.090 5 C -0.176 4.176 6 C -0.029 4.029 7 C -0.027 4.027 8 N -0.128 5.128 9 C -0.371 4.371 10 S 0.384 5.616 11 C -0.202 4.202 12 C -0.180 4.180 13 C 0.139 3.861 14 C -0.444 4.444 15 H 0.113 0.887 16 C -0.150 4.150 17 N -0.385 5.385 18 Si 0.739 3.261 19 H -0.178 1.178 20 H -0.192 1.192 21 H -0.195 1.195 22 H 0.093 0.907 23 H 0.092 0.908 24 H 0.114 0.886 25 H 0.116 0.884 26 H 0.175 0.825 27 H 0.149 0.851 28 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.072 0.948 -1.371 1.669 hybrid contribution -1.112 -0.036 0.013 1.112 sum -1.184 0.913 -1.358 2.019 Atomic orbital electron populations 1.23603 0.98230 1.05569 1.04740 1.85061 1.02392 1.06108 1.93761 1.22516 0.96425 0.93675 1.14649 1.20209 0.96454 0.90742 1.01630 1.17847 0.90037 0.91284 1.18415 1.16023 0.84173 0.93364 1.09296 1.25469 0.92268 0.92473 0.92527 1.81138 1.12138 1.08693 1.10866 1.24505 1.00459 1.00071 1.12100 1.82588 0.99358 1.02288 1.77407 1.22189 0.96339 0.95271 1.06431 1.20453 0.96701 0.90558 1.10290 1.18011 0.88210 0.91908 0.88000 1.19687 0.93695 0.99549 1.31455 0.88685 1.26074 1.01049 0.95435 0.92445 1.69846 1.27025 1.22261 1.19366 0.86094 0.79698 0.80578 0.79730 1.17763 1.19200 1.19451 0.90740 0.90802 0.88585 0.88354 0.82542 0.85088 0.89897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.32 9.16 101.05 0.93 -1.40 15 2 S -0.11 -2.20 21.29 -107.50 -2.29 -4.48 15 3 C -0.16 -3.56 6.31 -36.57 -0.23 -3.79 15 4 C -0.06 -1.34 9.15 -38.80 -0.36 -1.69 15 5 C -0.17 -3.57 6.03 -104.96 -0.63 -4.20 15 6 C -0.01 -0.17 5.85 -105.87 -0.62 -0.79 15 7 C 0.29 5.38 15.37 -22.47 -0.35 5.04 15 8 N -0.45 -8.70 18.54 41.84 0.78 -7.92 15 9 C -0.23 -3.83 10.61 29.64 0.31 -3.51 15 10 S 0.12 2.02 22.98 -107.50 -2.47 -0.45 15 11 C -0.09 -1.86 6.40 -38.63 -0.25 -2.10 15 12 C -0.15 -3.53 8.71 -38.55 -0.34 -3.87 15 13 C 0.15 3.54 5.71 -104.89 -0.60 2.94 15 14 C -0.42 -9.70 8.54 -38.00 -0.32 -10.02 15 15 H 0.10 2.18 7.14 -52.49 -0.37 1.80 15 16 C 0.07 1.59 5.14 -17.33 -0.09 1.50 15 17 N -0.76 -17.21 10.98 55.55 0.61 -16.60 15 18 Si 0.92 16.47 29.59 -169.99 -5.03 11.44 15 19 H -0.25 -4.58 7.11 56.52 0.40 -4.18 15 20 H -0.27 -4.72 7.11 56.52 0.40 -4.32 15 21 H -0.27 -4.80 7.11 56.52 0.40 -4.40 15 22 H 0.07 1.13 7.76 -51.93 -0.40 0.73 15 23 H 0.07 1.10 7.75 -51.93 -0.40 0.70 15 24 H 0.10 1.20 8.14 -51.92 -0.42 0.78 15 25 H 0.10 1.95 5.83 -52.49 -0.31 1.64 15 26 H 0.16 2.10 8.06 -52.49 -0.42 1.68 15 27 H 0.13 3.10 6.17 -52.49 -0.32 2.77 15 28 H 0.29 5.86 8.30 -40.82 -0.34 5.52 15 LS Contribution 280.83 15.07 4.23 4.23 Total: -1.00 -24.48 280.83 -8.50 -32.98 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -1.79 Total: 2.72 kcal Atomic # 6 Polarization: -19.37 SS G_CDS: -2.54 Total: -21.91 kcal Atomic # 7 Polarization: -25.91 SS G_CDS: 1.39 Total: -24.53 kcal Atomic # 14 Polarization: 16.47 SS G_CDS: -5.03 Total: 11.44 kcal Atomic # 16 Polarization: -0.17 SS G_CDS: -4.76 Total: -4.93 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -24.48 -8.50 -32.98 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396210281.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.275 kcal (2) G-P(sol) polarization free energy of solvation -24.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds