Wall clock time and date at job start Mon Mar 30 2020 06:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.76203 * 103.00026 * 2 1 4 4 C 1.37530 * 120.38765 * 359.97438 * 3 2 1 5 5 C 1.40980 * 120.69744 * 179.97438 * 4 3 2 6 6 C 1.46209 * 128.79829 * 180.02562 * 5 4 3 7 7 C 1.43198 * 123.07832 * 359.97438 * 6 5 4 8 8 N 6.20660 * 52.71043 * 359.97438 * 2 1 3 9 9 C 1.35168 * 113.84010 * 179.97438 * 6 5 4 10 10 S 1.69940 * 112.18588 * 0.02562 * 9 6 5 11 11 C 1.40096 * 120.19255 * 359.97438 * 5 4 3 12 12 C 1.38932 * 120.50396 * 0.02562 * 11 5 4 13 13 C 1.40306 * 120.38927 * 359.71957 * 12 11 5 14 14 C 1.40794 * 120.50332 * 180.25578 * 13 12 11 15 15 H 1.07996 * 119.99884 * 205.08895 * 14 13 12 16 16 C 1.39886 * 119.99813 * 25.09113 * 14 13 12 17 17 N 1.30913 * 119.99901 * 17.40436 * 16 14 13 18 18 Si 1.86793 * 119.99712 * 197.40432 * 16 14 13 19 19 H 1.48499 * 109.47194 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46907 * 119.99811 * 18 16 14 21 21 H 1.48502 * 109.47237 * 239.99685 * 18 16 14 22 22 H 1.08996 * 109.46945 * 299.99888 * 1 2 3 23 23 H 1.08997 * 109.47160 * 60.00489 * 1 2 3 24 24 H 1.09000 * 109.46599 * 179.97438 * 1 2 3 25 25 H 1.07997 * 119.64900 * 359.97438 * 4 3 2 26 26 H 1.07998 * 123.90246 * 180.02562 * 9 6 5 27 27 H 1.08001 * 119.80754 * 180.02562 * 12 11 5 28 28 H 0.97005 * 119.99925 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 1.2109 2.6616 -0.0005 5 6 1.5206 4.0370 0.0000 6 6 0.6102 5.1810 0.0001 7 6 -0.8153 5.0454 -0.0009 8 7 -1.9463 4.9379 -0.0022 9 6 1.2374 6.3784 0.0012 10 16 2.9291 6.2166 0.0015 11 6 2.8567 4.4583 0.0016 12 6 3.8893 3.5288 0.0022 13 6 3.6070 2.1544 0.0071 14 6 4.6516 1.2103 0.0131 15 1 4.4850 0.2183 -0.3799 16 6 5.9050 1.5574 0.5281 17 7 6.0273 2.6069 1.3011 18 14 7.4042 0.5233 0.1129 19 1 7.0017 -0.5989 -0.7725 20 1 8.4095 1.3662 -0.5830 21 1 7.9933 -0.0190 1.3636 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3632 -1.0277 -0.0005 25 1 0.1779 2.3465 -0.0014 26 1 0.7230 7.3279 0.0019 27 1 4.9153 3.8661 0.0039 28 1 6.8966 2.8477 1.6579 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396210281.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:34 Heat of formation + Delta-G solvation = 44.243399 kcal Electronic energy + Delta-G solvation = -15612.352810 eV Core-core repulsion = 13037.804038 eV Total energy + Delta-G solvation = -2574.548772 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 275.013 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.89289 -37.85941 -36.35790 -34.67354 -31.83745 -30.92414 -29.48740 -27.16557 -25.47066 -23.27196 -22.62838 -19.54942 -18.88624 -17.92805 -17.31724 -16.93453 -15.92697 -15.66626 -15.30644 -15.19421 -14.69109 -14.56894 -14.39247 -14.18722 -13.92613 -13.76086 -13.32902 -13.16152 -12.91619 -12.74889 -12.54204 -12.18059 -12.02075 -11.84895 -11.35530 -11.08104 -10.87310 -10.42881 -9.65595 -8.84940 -8.73045 -7.99538 -6.33865 -0.16582 0.55812 0.76311 0.94503 1.00758 1.16778 1.42432 1.48146 1.57466 1.62826 1.85331 2.18817 2.28335 2.68001 3.15582 3.42874 3.94424 4.10884 4.24809 4.31090 4.65830 4.79572 4.83248 4.87296 5.00304 5.12835 5.31105 5.50867 5.74379 5.79161 5.97527 6.40329 6.44422 6.71489 6.75805 8.17613 Molecular weight = 275.01amu Principal moments of inertia in cm(-1) A = 0.016554 B = 0.007500 C = 0.005245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.072019 B = 3732.527451 C = 5337.562269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 S -0.138 6.138 3 C -0.174 4.174 4 C -0.076 4.076 5 C -0.172 4.172 6 C -0.036 4.036 7 C 0.301 3.699 8 N -0.465 5.465 9 C -0.196 4.196 10 S 0.178 5.822 11 C -0.117 4.117 12 C -0.172 4.172 13 C 0.118 3.882 14 C -0.449 4.449 15 H 0.088 0.912 16 C 0.040 3.960 17 N -0.796 5.796 18 Si 0.981 3.019 19 H -0.257 1.257 20 H -0.260 1.260 21 H -0.264 1.264 22 H 0.075 0.925 23 H 0.077 0.923 24 H 0.127 0.873 25 H 0.111 0.889 26 H 0.200 0.800 27 H 0.119 0.881 28 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.032 2.195 -1.703 2.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 S 0.103 5.897 3 C -0.287 4.287 4 C -0.103 4.103 5 C -0.180 4.180 6 C -0.055 4.055 7 C -0.015 4.015 8 N -0.143 5.143 9 C -0.336 4.336 10 S 0.445 5.555 11 C -0.233 4.233 12 C -0.200 4.200 13 C 0.109 3.891 14 C -0.477 4.477 15 H 0.106 0.894 16 C -0.179 4.179 17 N -0.419 5.419 18 Si 0.801 3.199 19 H -0.181 1.181 20 H -0.184 1.184 21 H -0.189 1.189 22 H 0.094 0.906 23 H 0.096 0.904 24 H 0.146 0.854 25 H 0.128 0.872 26 H 0.217 0.783 27 H 0.136 0.864 28 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.834 2.203 -1.547 2.818 hybrid contribution -1.038 -0.227 0.066 1.065 sum -1.872 1.976 -1.481 3.099 Atomic orbital electron populations 1.23664 0.94449 1.07713 1.04969 1.85008 1.06472 1.04636 1.93621 1.22771 0.96271 0.95363 1.14276 1.20414 0.96847 0.91081 1.01999 1.18206 0.90676 0.92061 1.17052 1.15881 0.84079 0.93218 1.12347 1.25307 0.91993 0.92166 0.91999 1.81156 1.12442 1.08934 1.11731 1.25109 1.00426 1.01089 1.06959 1.82463 0.99269 0.98129 1.75676 1.22516 0.96163 0.98162 1.06477 1.20386 0.96635 0.91096 1.11834 1.18356 0.89276 0.92624 0.88861 1.19782 0.94933 0.99521 1.33486 0.89403 1.26772 1.02959 0.96406 0.91759 1.69870 1.27972 1.23736 1.20363 0.85149 0.76394 0.78926 0.79435 1.18088 1.18398 1.18898 0.90594 0.90352 0.85446 0.87156 0.78327 0.86370 0.89195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.05 9.16 113.37 1.04 -3.01 15 2 S -0.14 -5.40 21.29 -56.49 -1.20 -6.60 15 3 C -0.17 -7.96 6.31 24.22 0.15 -7.81 15 4 C -0.08 -3.26 9.15 22.77 0.21 -3.05 15 5 C -0.17 -7.19 6.03 -20.08 -0.12 -7.31 15 6 C -0.04 -1.25 5.85 -20.67 -0.12 -1.37 15 7 C 0.30 10.52 15.37 88.33 1.36 11.88 15 8 N -0.47 -16.96 18.54 19.00 0.35 -16.61 15 9 C -0.20 -5.68 10.61 67.11 0.71 -4.97 15 10 S 0.18 5.66 22.98 -56.49 -1.30 4.36 15 11 C -0.12 -5.00 6.40 22.89 0.15 -4.86 15 12 C -0.17 -8.26 8.71 22.94 0.20 -8.06 15 13 C 0.12 5.86 5.71 -20.04 -0.11 5.75 15 14 C -0.45 -21.97 8.54 23.29 0.20 -21.77 15 15 H 0.09 4.25 7.14 -2.91 -0.02 4.23 15 16 C 0.04 1.82 5.14 85.23 0.44 2.26 15 17 N -0.80 -37.19 10.98 21.82 0.24 -36.95 15 18 Si 0.98 34.53 29.59 68.60 2.03 36.56 15 19 H -0.26 -9.05 7.11 99.48 0.71 -8.34 15 20 H -0.26 -8.71 7.11 99.48 0.71 -8.00 15 21 H -0.26 -8.98 7.11 99.48 0.71 -8.27 15 22 H 0.08 2.20 7.76 -2.39 -0.02 2.18 15 23 H 0.08 2.22 7.75 -2.39 -0.02 2.20 15 24 H 0.13 2.89 8.14 -2.39 -0.02 2.87 15 25 H 0.11 4.32 5.83 -2.91 -0.02 4.31 15 26 H 0.20 4.13 8.06 -2.91 -0.02 4.11 15 27 H 0.12 5.84 6.17 -2.91 -0.02 5.82 15 28 H 0.30 12.34 8.30 -92.70 -0.77 11.57 15 Total: -1.00 -54.34 280.83 5.43 -48.90 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: 1.22 Total: 12.66 kcal Atomic # 6 Polarization: -46.42 SS G_CDS: 4.10 Total: -42.32 kcal Atomic # 7 Polarization: -54.15 SS G_CDS: 0.59 Total: -53.56 kcal Atomic # 14 Polarization: 34.53 SS G_CDS: 2.03 Total: 36.56 kcal Atomic # 16 Polarization: 0.26 SS G_CDS: -2.50 Total: -2.24 kcal Total: -54.34 5.43 -48.90 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396210281.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.147 kcal (2) G-P(sol) polarization free energy of solvation -54.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds