Wall clock time and date at job start Mon Mar 30 2020 07:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99827 * 2 1 4 4 H 1.48495 * 109.47367 * 270.00288 * 3 2 1 5 5 H 1.48504 * 109.47177 * 30.00238 * 3 2 1 6 6 H 1.48498 * 109.47248 * 150.00069 * 3 2 1 7 7 C 1.37875 * 120.00216 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00097 * 182.05806 * 7 2 1 9 9 C 1.50698 * 119.99771 * 2.05011 * 7 2 1 10 10 H 1.08993 * 109.47554 * 335.11513 * 9 7 2 11 11 N 1.46898 * 109.46971 * 215.11279 * 9 7 2 12 12 C 1.46894 * 111.00002 * 85.00492 * 11 9 7 13 13 C 1.50710 * 109.47377 * 179.97438 * 12 11 9 14 14 C 1.35347 * 127.92068 * 89.99447 * 13 12 11 15 15 N 1.31741 * 112.46429 * 180.30389 * 14 13 12 16 16 N 1.27578 * 118.27044 * 359.48101 * 15 14 13 17 17 S 1.56516 * 109.22399 * 0.50393 * 16 15 14 18 18 C 1.50700 * 109.46727 * 95.11698 * 9 7 2 19 19 C 1.38242 * 120.00249 * 73.99396 * 18 9 7 20 20 C 1.38229 * 119.99886 * 179.81055 * 19 18 9 21 21 C 1.38234 * 120.00269 * 0.39649 * 20 19 18 22 22 C 1.38239 * 120.00126 * 359.85649 * 21 20 19 23 23 C 1.38231 * 120.00116 * 254.26762 * 18 9 7 24 24 H 0.97004 * 120.00268 * 359.97438 * 1 2 3 25 25 H 1.00901 * 110.99977 * 208.95873 * 11 9 7 26 26 H 1.09002 * 109.47046 * 60.00074 * 12 11 9 27 27 H 1.09001 * 109.47052 * 299.99843 * 12 11 9 28 28 H 1.08001 * 123.76432 * 0.04335 * 14 13 12 29 29 H 1.08000 * 119.99630 * 359.97438 * 19 18 9 30 30 H 1.08004 * 120.00092 * 180.23192 * 20 19 18 31 31 H 1.08001 * 120.00523 * 179.83526 * 21 20 19 32 32 H 1.08000 * 120.00056 * 179.97438 * 22 21 20 33 33 H 1.08005 * 119.99629 * 359.97438 * 23 18 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0841 -1.1943 0.0331 9 6 1.2518 -2.4987 -0.0478 10 1 0.2499 -2.3549 0.3564 11 7 1.9634 -3.5038 0.7530 12 6 1.5872 -3.4107 2.1698 13 6 2.3350 -4.4553 2.9579 14 6 3.5424 -4.3381 3.5582 15 7 3.9140 -5.4483 4.1624 16 7 3.1263 -6.4510 4.1219 17 16 1.8499 -6.0708 3.2998 18 6 1.1545 -2.9709 -1.4756 19 6 2.2663 -3.4961 -2.1073 20 6 2.1760 -3.9329 -3.4156 21 6 0.9760 -3.8369 -4.0951 22 6 -0.1345 -3.3069 -3.4652 23 6 -0.0451 -2.8737 -2.1555 24 1 -0.4851 0.8401 0.0004 25 1 1.7994 -4.4331 0.3956 26 1 0.5149 -3.5771 2.2727 27 1 1.8391 -2.4201 2.5483 28 1 4.1368 -3.4366 3.5401 29 1 3.2048 -3.5676 -1.5776 30 1 3.0437 -4.3467 -3.9080 31 1 0.9061 -4.1757 -5.1182 32 1 -1.0720 -3.2315 -3.9962 33 1 -0.9127 -2.4596 -1.6633 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400260607.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:53 Heat of formation + Delta-G solvation = 95.451992 kcal Electronic energy + Delta-G solvation = -18133.846279 eV Core-core repulsion = 15286.891052 eV Total energy + Delta-G solvation = -2846.955227 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 275.079 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.54796 -38.55387 -35.90394 -33.18579 -31.74579 -30.16428 -30.03912 -27.58796 -26.11255 -24.13713 -22.50121 -21.65818 -20.77449 -20.02802 -18.77475 -16.69703 -16.15575 -15.51275 -15.40320 -14.84849 -14.46477 -14.19452 -13.99069 -13.67347 -13.15675 -12.70556 -12.61283 -12.27301 -12.05866 -11.84496 -11.59993 -11.10400 -11.02915 -10.84815 -10.33280 -10.30251 -9.98558 -9.83349 -9.72801 -9.66107 -9.41966 -8.67690 -8.13993 -7.82784 -7.57615 -6.19593 -4.23568 0.42297 1.28509 1.89514 2.19374 2.20575 2.48092 3.22182 3.29490 3.32657 4.28274 4.42484 4.59237 4.94805 5.08982 5.13325 5.36179 5.58493 5.68018 5.77255 5.90279 5.96047 6.10903 6.29373 6.35107 6.44379 6.77058 6.83681 7.06957 7.22611 7.25793 7.51245 7.71985 7.77263 7.91724 7.93215 7.98731 8.43701 8.88804 9.40708 10.85364 Molecular weight = 275.08amu Principal moments of inertia in cm(-1) A = 0.013639 B = 0.006261 C = 0.004760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2052.411535 B = 4471.237049 C = 5880.533146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.064 3.936 3 Si 0.896 3.104 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.490 4.490 8 H 0.065 0.935 9 C 0.235 3.765 10 H 0.048 0.952 11 N -0.677 5.677 12 C 0.147 3.853 13 C -0.219 4.219 14 C 0.000 4.000 15 N -0.245 5.245 16 N -0.303 5.303 17 S 0.393 5.607 18 C -0.040 4.040 19 C -0.110 4.110 20 C -0.133 4.133 21 C -0.150 4.150 22 C -0.130 4.130 23 C -0.112 4.112 24 H 0.264 0.736 25 H 0.316 0.684 26 H 0.041 0.959 27 H 0.105 0.895 28 H 0.202 0.798 29 H 0.120 0.880 30 H 0.107 0.893 31 H 0.105 0.895 32 H 0.107 0.893 33 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.381 -7.791 0.708 7.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.139 4.139 3 Si 0.724 3.276 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.196 1.196 7 C -0.528 4.528 8 H 0.084 0.916 9 C 0.129 3.871 10 H 0.066 0.934 11 N -0.308 5.308 12 C 0.015 3.985 13 C -0.358 4.358 14 C -0.164 4.164 15 N -0.111 5.111 16 N -0.283 5.283 17 S 0.527 5.473 18 C -0.042 4.042 19 C -0.128 4.128 20 C -0.152 4.152 21 C -0.168 4.168 22 C -0.148 4.148 23 C -0.130 4.130 24 H 0.074 0.926 25 H 0.132 0.868 26 H 0.059 0.941 27 H 0.123 0.877 28 H 0.219 0.781 29 H 0.138 0.862 30 H 0.125 0.875 31 H 0.123 0.877 32 H 0.125 0.875 33 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.049 -9.090 1.450 9.205 hybrid contribution -0.018 2.301 -0.638 2.388 sum -0.067 -6.788 0.812 6.837 Atomic orbital electron populations 1.69883 1.05967 1.27138 1.49601 1.25018 0.94926 0.99495 0.94469 0.86520 0.79910 0.82902 0.78310 1.20577 1.21232 1.19639 1.20991 0.93535 0.88531 1.49736 0.91648 1.18443 0.94943 0.89120 0.84615 0.93399 1.60915 1.62702 1.07409 0.99822 1.20173 0.94234 0.95198 0.88860 1.27579 1.00415 1.02488 1.05305 1.23739 0.95656 0.98772 0.98196 1.71251 1.24530 0.96747 1.18568 1.78825 1.04604 1.23329 1.21523 1.81423 1.25486 1.02928 1.37422 1.20637 0.91922 0.92413 0.99190 1.20999 0.98797 0.98889 0.94125 1.21011 0.97071 1.01725 0.95351 1.20852 0.93766 1.03055 0.99125 1.20997 0.97902 1.00493 0.95438 1.21096 0.98277 0.99256 0.94399 0.92638 0.86814 0.94144 0.87664 0.78114 0.86221 0.87511 0.87668 0.87480 0.86311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.23 12.78 55.43 0.71 -22.52 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 20.17 29.54 -169.99 -5.02 15.15 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.49 -12.07 8.30 -34.44 -0.29 -12.36 16 8 H 0.07 1.66 7.81 -52.49 -0.41 1.25 16 9 C 0.24 5.11 2.34 -70.02 -0.16 4.95 16 10 H 0.05 1.15 6.73 -51.93 -0.35 0.80 16 11 N -0.68 -12.41 5.83 -110.46 -0.64 -13.05 16 12 C 0.15 2.39 6.07 -4.97 -0.03 2.36 16 13 C -0.22 -3.15 6.20 -35.33 -0.22 -3.37 16 14 C 0.00 0.00 11.54 -18.62 -0.21 -0.21 16 15 N -0.24 -3.92 11.68 29.33 0.34 -3.58 16 16 N -0.30 -4.70 12.54 60.35 0.76 -3.94 16 17 S 0.39 5.05 23.40 -107.50 -2.52 2.53 16 18 C -0.04 -0.84 4.64 -104.62 -0.49 -1.32 16 19 C -0.11 -2.11 9.08 -39.58 -0.36 -2.47 16 20 C -0.13 -2.29 10.05 -39.59 -0.40 -2.68 16 21 C -0.15 -2.48 10.05 -39.58 -0.40 -2.88 16 22 C -0.13 -2.30 10.05 -39.58 -0.40 -2.69 16 23 C -0.11 -2.25 9.67 -39.58 -0.38 -2.63 16 24 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 25 H 0.32 5.37 8.14 -39.29 -0.32 5.05 16 26 H 0.04 0.64 8.06 -51.93 -0.42 0.22 16 27 H 0.11 1.87 8.00 -51.93 -0.42 1.45 16 28 H 0.20 2.59 8.06 -52.49 -0.42 2.17 16 29 H 0.12 2.28 7.91 -52.49 -0.41 1.86 16 30 H 0.11 1.55 8.06 -52.48 -0.42 1.13 16 31 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 32 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 33 H 0.12 2.48 8.00 -52.48 -0.42 2.06 16 LS Contribution 305.71 15.07 4.61 4.61 Total: -1.00 -26.93 305.71 -8.77 -35.70 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -3.57 Total: 6.88 kcal Atomic # 6 Polarization: -18.34 SS G_CDS: -3.43 Total: -21.78 kcal Atomic # 7 Polarization: -44.26 SS G_CDS: 1.16 Total: -43.10 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Atomic # 16 Polarization: 5.05 SS G_CDS: -2.52 Total: 2.53 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -26.93 -8.77 -35.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400260607.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.150 kcal (2) G-P(sol) polarization free energy of solvation -26.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds