Wall clock time and date at job start Mon Mar 30 2020 07:11:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39847 * 120.06884 * 108.70305 * 3 2 1 5 5 C 1.38593 * 120.41329 * 179.97438 * 4 3 2 6 6 F 1.35105 * 119.72256 * 179.97438 * 5 4 3 7 7 C 1.37913 * 120.55287 * 359.97438 * 5 4 3 8 8 C 1.40648 * 120.12587 * 0.02562 * 7 5 4 9 9 C 1.41143 * 120.20292 * 179.97438 * 8 7 5 10 10 H 1.08005 * 119.99210 * 154.25158 * 9 8 7 11 11 C 1.39937 * 120.00474 * 334.25070 * 9 8 7 12 12 N 1.30861 * 119.99411 * 343.32972 * 11 9 8 13 13 Si 1.86795 * 120.00058 * 163.32699 * 11 9 8 14 14 H 1.48502 * 109.46877 * 90.00293 * 13 11 9 15 15 H 1.48495 * 109.47204 * 209.99807 * 13 11 9 16 16 H 1.48501 * 109.47449 * 330.00476 * 13 11 9 17 17 C 1.39853 * 120.06966 * 288.41815 * 3 2 1 18 18 O 1.35434 * 120.27004 * 0.02838 * 17 3 2 19 19 C 1.42908 * 117.00181 * 90.00094 * 18 17 3 20 20 F 1.39898 * 109.46731 * 59.99560 * 19 18 17 21 21 F 1.39893 * 109.47327 * 180.02562 * 19 18 17 22 22 F 1.39898 * 109.46554 * 299.99801 * 19 18 17 23 23 H 1.08002 * 119.79688 * 359.94414 * 4 3 2 24 24 H 1.08003 * 119.93544 * 179.97438 * 7 5 4 25 25 H 0.97003 * 119.99408 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2685 0.3890 -1.1464 5 6 4.6544 0.3928 -1.1541 6 9 5.3170 0.7702 -2.2694 7 6 5.3628 0.0147 -0.0328 8 6 4.6816 -0.3801 1.1326 9 6 5.4049 -0.7680 2.2809 10 1 4.9577 -0.6703 3.2592 11 6 6.7012 -1.2790 2.1519 12 7 7.1245 -1.7030 0.9885 13 14 7.8273 -1.3558 3.6403 14 1 7.6492 -2.6593 4.3290 15 1 9.2389 -1.2171 3.2006 16 1 7.4890 -0.2521 4.5745 17 6 3.2689 -0.3814 1.1483 18 8 2.5989 -0.7541 2.2647 19 6 2.2790 -2.1407 2.3970 20 9 3.4583 -2.8932 2.3974 21 9 1.5922 -2.3483 3.5979 22 9 1.4729 -2.5375 1.3247 23 1 2.7262 0.6875 -2.0314 24 1 6.4426 0.0210 -0.0500 25 1 8.0232 -2.0569 0.8990 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575650224.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:11:17 Heat of formation + Delta-G solvation = -204.582170 kcal Electronic energy + Delta-G solvation = -21325.684325 eV Core-core repulsion = 17189.522879 eV Total energy + Delta-G solvation = -4136.161446 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 275.031 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.40798 -48.06482 -47.24728 -46.99104 -39.07507 -36.42852 -35.89298 -34.13755 -30.57163 -29.17890 -26.12179 -24.76495 -23.07482 -21.41612 -19.19938 -18.66573 -18.24838 -18.13644 -16.79257 -16.01743 -15.61050 -15.46286 -14.91595 -14.73406 -14.06045 -13.94572 -13.59368 -13.38516 -13.34954 -13.28191 -13.21883 -13.12498 -12.79917 -12.69570 -12.55868 -12.03643 -11.95998 -11.62345 -11.13458 -10.98951 -10.66255 -10.60319 -9.96696 -9.63505 -8.16223 -7.82973 -7.33300 -4.99692 1.34827 2.00101 2.81054 2.84619 2.91120 2.91743 3.19852 3.56767 3.61248 3.92912 4.19521 4.44685 4.78412 4.95955 5.09296 5.35156 5.74898 6.10126 6.26583 6.32708 6.60857 6.78206 7.09281 7.15764 7.49440 7.53756 7.98190 8.00518 8.17207 8.23853 9.57364 Molecular weight = 275.03amu Principal moments of inertia in cm(-1) A = 0.014859 B = 0.010364 C = 0.006613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.945330 B = 2701.043952 C = 4233.218613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C 0.273 3.727 3 C 0.037 3.963 4 C -0.221 4.221 5 C 0.119 3.881 6 F -0.153 7.153 7 C -0.159 4.159 8 C 0.127 3.873 9 C -0.406 4.406 10 H 0.098 0.902 11 C 0.072 3.928 12 N -0.760 5.760 13 Si 0.921 3.079 14 H -0.263 1.263 15 H -0.270 1.270 16 H -0.253 1.253 17 C -0.045 4.045 18 O -0.295 6.295 19 C 0.568 3.432 20 F -0.164 7.164 21 F -0.159 7.159 22 F -0.187 7.187 23 H 0.122 0.878 24 H 0.144 0.856 25 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.210 -0.229 1.395 1.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.115 5.115 2 C -0.042 4.042 3 C 0.033 3.967 4 C -0.244 4.244 5 C 0.099 3.901 6 F -0.132 7.132 7 C -0.180 4.180 8 C 0.122 3.878 9 C -0.432 4.432 10 H 0.116 0.884 11 C -0.151 4.151 12 N -0.381 5.381 13 Si 0.743 3.257 14 H -0.187 1.187 15 H -0.195 1.195 16 H -0.176 1.176 17 C -0.093 4.093 18 O -0.216 6.216 19 C 0.479 3.521 20 F -0.146 7.146 21 F -0.141 7.141 22 F -0.169 7.169 23 H 0.140 0.860 24 H 0.161 0.839 25 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.391 -0.281 1.387 1.468 hybrid contribution 0.997 -0.508 0.278 1.153 sum 0.606 -0.789 1.665 1.939 Atomic orbital electron populations 1.81077 1.12185 1.09602 1.08679 1.25795 0.92830 0.92957 0.92613 1.15702 0.83272 1.03757 0.93941 1.20107 0.92159 1.14528 0.97603 1.17340 0.89389 1.00248 0.83121 1.91406 1.81173 1.89322 1.51288 1.21430 1.01240 1.03232 0.92106 1.17304 0.88439 0.89107 0.92927 1.19773 0.97106 1.31515 0.94807 0.88410 1.26161 0.98565 0.92181 0.98223 1.69763 1.19061 1.23927 1.25388 0.86054 0.78414 0.80557 0.80661 1.18715 1.19460 1.17641 1.18072 0.89984 1.15232 0.86006 1.86573 1.74568 1.18200 1.42224 1.20983 0.74908 0.82574 0.73599 1.93309 1.47628 1.77579 1.96073 1.93168 1.80042 1.94444 1.46424 1.93204 1.74766 1.91373 1.57573 0.85972 0.83853 0.89407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -9.21 18.54 41.84 0.78 -8.44 15 2 C 0.27 5.59 13.55 -22.47 -0.30 5.28 15 3 C 0.04 0.77 5.61 -106.76 -0.60 0.17 15 4 C -0.22 -4.29 9.72 -38.85 -0.38 -4.66 15 5 C 0.12 2.41 7.27 -39.57 -0.29 2.12 15 6 F -0.15 -2.97 17.25 2.25 0.04 -2.93 15 7 C -0.16 -3.45 8.64 -38.79 -0.34 -3.79 15 8 C 0.13 2.85 5.45 -106.73 -0.58 2.27 15 9 C -0.41 -9.02 7.40 -37.84 -0.28 -9.30 15 10 H 0.10 2.14 7.66 -52.48 -0.40 1.74 15 11 C 0.07 1.51 5.15 -17.33 -0.09 1.42 15 12 N -0.76 -16.26 10.96 55.55 0.61 -15.65 15 13 Si 0.92 15.80 29.59 -169.99 -5.03 10.77 15 14 H -0.26 -4.55 7.11 56.52 0.40 -4.15 15 15 H -0.27 -4.49 7.11 56.52 0.40 -4.09 15 16 H -0.25 -4.33 7.11 56.52 0.40 -3.93 15 17 C -0.05 -1.00 5.37 -37.82 -0.20 -1.20 15 18 O -0.30 -6.39 9.04 -17.99 -0.16 -6.55 15 19 C 0.57 11.63 3.80 101.05 0.38 12.01 15 20 F -0.16 -3.47 15.77 2.25 0.04 -3.44 15 21 F -0.16 -3.00 17.53 2.25 0.04 -2.96 15 22 F -0.19 -3.84 15.76 2.25 0.04 -3.81 15 23 H 0.12 2.09 8.06 -52.49 -0.42 1.67 15 24 H 0.14 3.15 6.19 -52.48 -0.32 2.82 15 25 H 0.29 5.65 8.30 -40.82 -0.34 5.31 15 LS Contribution 257.92 15.07 3.89 3.89 Total: -1.00 -22.71 257.92 -2.73 -25.44 By element: Atomic # 1 Polarization: -0.35 SS G_CDS: -0.28 Total: -0.63 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: -2.67 Total: 4.32 kcal Atomic # 7 Polarization: -25.47 SS G_CDS: 1.38 Total: -24.09 kcal Atomic # 8 Polarization: -6.39 SS G_CDS: -0.16 Total: -6.55 kcal Atomic # 9 Polarization: -13.29 SS G_CDS: 0.15 Total: -13.14 kcal Atomic # 14 Polarization: 15.80 SS G_CDS: -5.03 Total: 10.77 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -22.71 -2.73 -25.44 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575650224.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -179.143 kcal (2) G-P(sol) polarization free energy of solvation -22.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds