Wall clock time and date at job start Mon Mar 30 2020 07:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46734 * 2 1 4 4 C 1.53004 * 109.47161 * 240.00641 * 2 1 3 5 5 C 1.50701 * 109.47211 * 175.00101 * 4 2 1 6 6 H 1.08002 * 119.99761 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99694 * 180.27574 * 5 4 2 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 4 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 4 10 10 H 1.48494 * 109.47230 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47301 * 119.99669 * 9 7 5 12 12 H 1.48498 * 109.47430 * 239.99516 * 9 7 5 13 13 N 1.46500 * 109.47481 * 120.00080 * 2 1 3 14 14 C 1.39837 * 119.99867 * 275.00046 * 13 2 1 15 15 C 1.38859 * 120.06456 * 359.72562 * 14 13 2 16 16 C 1.38250 * 119.98098 * 179.77117 * 15 14 13 17 17 Cl 1.73602 * 119.94673 * 180.27420 * 16 15 14 18 18 C 1.38369 * 120.10626 * 0.49932 * 16 15 14 19 19 C 1.38477 * 120.11925 * 359.75042 * 18 16 15 20 20 F 1.35107 * 119.98938 * 180.02562 * 19 18 16 21 21 C 1.38484 * 120.01710 * 0.02562 * 19 18 16 22 22 F 1.35097 * 120.04834 * 179.97438 * 21 19 18 23 23 H 1.09001 * 109.47261 * 59.99525 * 1 2 3 24 24 H 1.09000 * 109.46927 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46944 * 299.99471 * 1 2 3 26 26 H 1.09000 * 109.47211 * 54.99128 * 4 2 1 27 27 H 1.09007 * 109.46376 * 294.99670 * 4 2 1 28 28 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 29 29 H 0.96997 * 119.99537 * 95.00208 * 13 2 1 30 30 H 1.08007 * 120.00535 * 359.97438 * 15 14 13 31 31 H 1.07996 * 119.94169 * 179.72790 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5419 -0.6148 -1.3128 6 1 4.0789 -0.0854 -0.5396 7 6 4.2298 -1.1880 -2.3612 8 7 3.5759 -1.8323 -3.3029 9 14 6.0908 -1.0495 -2.4440 10 1 6.5825 -0.2803 -1.2728 11 1 6.6894 -2.4085 -2.4309 12 1 6.4800 -0.3493 -3.6943 13 7 2.0184 -0.6906 1.1961 14 6 2.1519 0.0070 2.4007 15 6 1.8274 1.3557 2.4632 16 6 1.9557 2.0426 3.6561 17 17 1.5429 3.7270 3.7349 18 6 2.4168 1.3908 4.7862 19 6 2.7466 0.0471 4.7275 20 9 3.1962 -0.5868 5.8326 21 6 2.6157 -0.6469 3.5363 22 9 2.9377 -1.9577 3.4781 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.6052 -0.2616 -2.1370 27 1 1.7516 -1.7714 -1.2057 28 1 4.0598 -2.2352 -4.0406 29 1 2.2491 -1.6317 1.1525 30 1 1.4719 1.8671 1.5808 31 1 2.5201 1.9310 5.7156 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695860821.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:12 Heat of formation + Delta-G solvation = -85.097220 kcal Electronic energy + Delta-G solvation = -18797.167655 eV Core-core repulsion = 15353.817239 eV Total energy + Delta-G solvation = -3443.350415 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 275.058 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.30090 -48.33364 -39.31480 -36.94691 -36.02621 -33.06894 -31.49278 -30.04212 -28.20463 -27.55724 -23.57881 -22.97557 -22.34259 -20.07754 -18.21311 -17.48197 -16.97569 -16.44611 -16.19525 -15.66176 -15.06975 -14.95390 -14.78370 -14.53879 -14.01422 -13.47036 -13.25049 -13.00085 -12.76385 -12.27133 -11.99646 -11.87670 -11.58177 -11.42748 -11.20307 -11.10768 -10.86999 -10.65113 -10.44802 -9.90478 -9.54894 -9.22177 -8.61133 -8.51783 -7.29652 -6.14324 -4.17654 0.90110 1.24953 1.95117 3.23955 3.32661 3.37048 3.40346 3.53947 4.05195 4.35989 4.45432 4.78811 5.02940 5.22590 5.29057 5.43564 5.57264 5.76626 5.79855 5.90183 6.02897 6.08013 6.20738 6.45978 6.60531 6.66569 7.21823 7.40388 7.65586 7.81952 7.99580 8.20373 8.88403 9.48358 10.96429 Molecular weight = 275.06amu Principal moments of inertia in cm(-1) A = 0.017040 B = 0.005434 C = 0.004978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.797290 B = 5151.659288 C = 5623.208089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.142 3.858 3 H 0.074 0.926 4 C 0.015 3.985 5 C -0.522 4.522 6 H 0.058 0.942 7 C 0.060 3.940 8 N -0.893 5.893 9 Si 0.891 3.109 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.283 1.283 13 N -0.695 5.695 14 C 0.249 3.751 15 C -0.186 4.186 16 C 0.037 3.963 17 Cl -0.060 7.060 18 C -0.204 4.204 19 C 0.131 3.869 20 F -0.127 7.127 21 C -0.026 4.026 22 F -0.130 7.130 23 H 0.064 0.936 24 H 0.055 0.945 25 H 0.047 0.953 26 H 0.036 0.964 27 H 0.023 0.977 28 H 0.262 0.738 29 H 0.410 0.590 30 H 0.150 0.850 31 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.345 6.710 13.230 15.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.038 3.962 3 H 0.092 0.908 4 C -0.022 4.022 5 C -0.560 4.560 6 H 0.076 0.924 7 C -0.142 4.142 8 N -0.532 5.532 9 Si 0.719 3.281 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.209 1.209 13 N -0.317 5.317 14 C 0.136 3.864 15 C -0.211 4.211 16 C 0.009 3.991 17 Cl -0.031 7.031 18 C -0.226 4.226 19 C 0.110 3.890 20 F -0.105 7.105 21 C -0.052 4.052 22 F -0.109 7.109 23 H 0.083 0.917 24 H 0.074 0.926 25 H 0.066 0.934 26 H 0.054 0.946 27 H 0.041 0.959 28 H 0.071 0.929 29 H 0.247 0.753 30 H 0.167 0.833 31 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -5.409 6.757 12.853 15.496 hybrid contribution 1.318 -0.593 0.008 1.445 sum -4.091 6.165 12.861 14.837 Atomic orbital electron populations 1.22305 0.96913 1.02009 1.01262 1.21443 0.91749 0.97376 0.85631 0.90779 1.19419 0.96528 0.95891 0.90385 1.21183 0.91624 1.34961 1.08243 0.92392 1.24992 0.98508 0.95098 0.95595 1.69952 1.35618 1.35724 1.11880 0.86548 0.85651 0.77891 0.78044 1.19698 1.20963 1.20933 1.45176 1.67617 1.13092 1.05792 1.17494 0.91795 0.91157 0.85992 1.20462 1.10101 0.92200 0.98289 1.20167 0.99362 0.85550 0.93984 1.98372 1.91859 1.14269 1.98604 1.20377 1.09850 0.92490 0.99867 1.17029 0.99747 0.90530 0.81718 1.91515 1.86528 1.81960 1.50535 1.16997 1.14462 0.80126 0.93623 1.91475 1.91266 1.31338 1.96787 0.91668 0.92604 0.93416 0.94609 0.95851 0.92879 0.75302 0.83266 0.83662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.48 9.44 37.16 0.35 -2.13 16 2 C 0.14 2.53 2.22 -67.93 -0.15 2.38 16 3 H 0.07 1.32 6.47 -51.92 -0.34 0.98 16 4 C 0.02 0.34 4.52 -27.88 -0.13 0.22 16 5 C -0.52 -13.60 8.84 -34.44 -0.30 -13.90 16 6 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 7 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 8 N -0.89 -25.45 13.29 55.43 0.74 -24.71 16 9 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 10 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 N -0.69 -12.04 4.97 -52.11 -0.26 -12.30 16 14 C 0.25 3.95 6.64 -83.69 -0.56 3.40 16 15 C -0.19 -2.65 8.65 -39.35 -0.34 -2.99 16 16 C 0.04 0.48 6.32 -39.53 -0.25 0.23 16 17 Cl -0.06 -0.68 28.95 -51.86 -1.50 -2.18 16 18 C -0.20 -2.56 9.80 -39.45 -0.39 -2.95 16 19 C 0.13 1.89 7.30 -39.40 -0.29 1.60 16 20 F -0.13 -1.85 17.18 2.25 0.04 -1.81 16 21 C -0.03 -0.42 7.32 -39.21 -0.29 -0.71 16 22 F -0.13 -2.22 16.55 2.25 0.04 -2.19 16 23 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 24 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 25 H 0.05 0.64 7.75 -51.93 -0.40 0.23 16 26 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 29 H 0.41 7.42 8.09 -40.82 -0.33 7.09 16 30 H 0.15 2.03 6.15 -52.48 -0.32 1.71 16 31 H 0.15 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 293.43 15.07 4.42 4.42 Total: -1.00 -27.10 293.43 -7.03 -34.12 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -3.05 Total: 1.88 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: -2.43 Total: -13.32 kcal Atomic # 7 Polarization: -37.49 SS G_CDS: 0.48 Total: -37.01 kcal Atomic # 9 Polarization: -4.07 SS G_CDS: 0.08 Total: -3.99 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -1.50 Total: -2.18 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -27.10 -7.03 -34.12 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695860821.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.973 kcal (2) G-P(sol) polarization free energy of solvation -27.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds