Wall clock time and date at job start Mon Mar 30 2020 07:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 109.46734 * 2 1 4 4 C 1.53004 * 109.47161 * 240.00641 * 2 1 3 5 5 C 1.50701 * 109.47211 * 175.00101 * 4 2 1 6 6 H 1.08002 * 119.99761 * 359.97438 * 5 4 2 7 7 C 1.37871 * 119.99694 * 180.27574 * 5 4 2 8 8 N 1.31514 * 120.00482 * 359.71466 * 7 5 4 9 9 Si 1.86801 * 119.99746 * 179.72062 * 7 5 4 10 10 H 1.48494 * 109.47230 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47301 * 119.99669 * 9 7 5 12 12 H 1.48498 * 109.47430 * 239.99516 * 9 7 5 13 13 N 1.46500 * 109.47481 * 120.00080 * 2 1 3 14 14 C 1.39837 * 119.99867 * 275.00046 * 13 2 1 15 15 C 1.38859 * 120.06456 * 359.72562 * 14 13 2 16 16 C 1.38250 * 119.98098 * 179.77117 * 15 14 13 17 17 Cl 1.73602 * 119.94673 * 180.27420 * 16 15 14 18 18 C 1.38369 * 120.10626 * 0.49932 * 16 15 14 19 19 C 1.38477 * 120.11925 * 359.75042 * 18 16 15 20 20 F 1.35107 * 119.98938 * 180.02562 * 19 18 16 21 21 C 1.38484 * 120.01710 * 0.02562 * 19 18 16 22 22 F 1.35097 * 120.04834 * 179.97438 * 21 19 18 23 23 H 1.09001 * 109.47261 * 59.99525 * 1 2 3 24 24 H 1.09000 * 109.46927 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46944 * 299.99471 * 1 2 3 26 26 H 1.09000 * 109.47211 * 54.99128 * 4 2 1 27 27 H 1.09007 * 109.46376 * 294.99670 * 4 2 1 28 28 H 0.96995 * 120.00207 * 179.97438 * 8 7 5 29 29 H 0.96997 * 119.99537 * 95.00208 * 13 2 1 30 30 H 1.08007 * 120.00535 * 359.97438 * 15 14 13 31 31 H 1.07996 * 119.94169 * 179.72790 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5419 -0.6148 -1.3128 6 1 4.0789 -0.0854 -0.5396 7 6 4.2298 -1.1880 -2.3612 8 7 3.5759 -1.8323 -3.3029 9 14 6.0908 -1.0495 -2.4440 10 1 6.5825 -0.2803 -1.2728 11 1 6.6894 -2.4085 -2.4309 12 1 6.4800 -0.3493 -3.6943 13 7 2.0184 -0.6906 1.1961 14 6 2.1519 0.0070 2.4007 15 6 1.8274 1.3557 2.4632 16 6 1.9557 2.0426 3.6561 17 17 1.5429 3.7270 3.7349 18 6 2.4168 1.3908 4.7862 19 6 2.7466 0.0471 4.7275 20 9 3.1962 -0.5868 5.8326 21 6 2.6157 -0.6469 3.5363 22 9 2.9377 -1.9577 3.4781 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 1.6052 -0.2616 -2.1370 27 1 1.7516 -1.7714 -1.2057 28 1 4.0598 -2.2352 -4.0406 29 1 2.2491 -1.6317 1.1525 30 1 1.4719 1.8671 1.5808 31 1 2.5201 1.9310 5.7156 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695860821.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:12 Heat of formation + Delta-G solvation = -98.827621 kcal Electronic energy + Delta-G solvation = -18797.763050 eV Core-core repulsion = 15353.817239 eV Total energy + Delta-G solvation = -3443.945810 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 275.058 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -50.48514 -49.55603 -40.49663 -38.13311 -37.20520 -34.93121 -32.95901 -31.18139 -29.44993 -29.27398 -25.25680 -24.24743 -23.60381 -21.49566 -19.41444 -18.70765 -18.48464 -18.14543 -17.39340 -16.89860 -16.61677 -16.14833 -16.07397 -15.99915 -15.31067 -14.90427 -14.48792 -14.27389 -14.02247 -13.69209 -13.48725 -13.32089 -13.20277 -12.81705 -12.67521 -12.40532 -12.38749 -12.07375 -11.99900 -11.35529 -11.30405 -10.88487 -10.59906 -9.73173 -8.54935 -8.21920 -6.30247 -0.23922 0.13461 0.92699 1.35902 1.39116 1.49460 2.23855 2.30407 2.38491 2.86829 3.13609 3.31423 3.66414 3.96267 4.10590 4.20977 4.27107 4.43531 4.59446 4.70059 4.89928 4.93633 5.01239 5.09171 5.28498 5.38336 5.47126 5.57958 5.78778 6.17242 6.26730 6.60350 6.84546 7.38837 8.89044 Molecular weight = 275.06amu Principal moments of inertia in cm(-1) A = 0.017040 B = 0.005434 C = 0.004978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.797290 B = 5151.659288 C = 5623.208089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.155 3.845 3 H 0.077 0.923 4 C 0.020 3.980 5 C -0.526 4.526 6 H 0.055 0.945 7 C 0.007 3.993 8 N -0.928 5.928 9 Si 0.951 3.049 10 H -0.269 1.269 11 H -0.283 1.283 12 H -0.278 1.278 13 N -0.708 5.708 14 C 0.236 3.764 15 C -0.184 4.184 16 C 0.040 3.960 17 Cl -0.039 7.039 18 C -0.184 4.184 19 C 0.127 3.873 20 F -0.128 7.128 21 C -0.045 4.045 22 F -0.143 7.143 23 H 0.072 0.928 24 H 0.050 0.950 25 H 0.068 0.932 26 H 0.017 0.983 27 H 0.001 0.999 28 H 0.262 0.738 29 H 0.403 0.597 30 H 0.157 0.843 31 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.294 8.467 14.723 17.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.051 3.949 3 H 0.095 0.905 4 C -0.018 4.018 5 C -0.564 4.564 6 H 0.073 0.927 7 C -0.191 4.191 8 N -0.569 5.569 9 Si 0.777 3.223 10 H -0.193 1.193 11 H -0.209 1.209 12 H -0.204 1.204 13 N -0.331 5.331 14 C 0.125 3.875 15 C -0.208 4.208 16 C 0.012 3.988 17 Cl -0.010 7.010 18 C -0.206 4.206 19 C 0.106 3.894 20 F -0.107 7.107 21 C -0.070 4.070 22 F -0.122 7.122 23 H 0.091 0.909 24 H 0.069 0.931 25 H 0.087 0.913 26 H 0.036 0.964 27 H 0.019 0.981 28 H 0.071 0.929 29 H 0.238 0.762 30 H 0.174 0.826 31 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -5.360 8.544 14.379 17.563 hybrid contribution 1.282 -1.057 -0.365 1.701 sum -4.077 7.487 14.014 16.403 Atomic orbital electron populations 1.22211 0.94492 1.02210 1.02671 1.21149 0.93539 0.96457 0.83772 0.90455 1.19279 0.95030 0.95027 0.92444 1.21526 0.93335 1.33902 1.07611 0.92669 1.25767 1.02638 0.95150 0.95587 1.70057 1.37176 1.37019 1.12628 0.85607 0.80829 0.77759 0.78116 1.19287 1.20898 1.20398 1.45025 1.69046 1.12763 1.06217 1.17575 0.92757 0.91764 0.85373 1.20587 1.09548 0.91500 0.99141 1.20219 0.98563 0.86542 0.93494 1.98388 1.91585 1.12449 1.98533 1.20663 1.07550 0.91591 1.00810 1.17129 0.99998 0.91118 0.81183 1.91513 1.86583 1.82155 1.50428 1.17265 1.15417 0.79851 0.94487 1.91435 1.91521 1.32323 1.96909 0.90865 0.93060 0.91282 0.96432 0.98077 0.92866 0.76224 0.82598 0.80902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.51 9.44 71.98 0.68 -3.83 16 2 C 0.15 5.47 2.22 44.99 0.10 5.57 16 3 H 0.08 2.67 6.47 -2.38 -0.02 2.65 16 4 C 0.02 0.92 4.52 29.85 0.13 1.05 16 5 C -0.53 -27.67 8.84 25.60 0.23 -27.45 16 6 H 0.06 2.88 7.74 -2.91 -0.02 2.86 16 7 C 0.01 0.37 5.46 84.65 0.46 0.84 16 8 N -0.93 -53.87 13.29 21.45 0.28 -53.59 16 9 Si 0.95 43.52 29.54 68.60 2.03 45.54 16 10 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 12 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 13 N -0.71 -24.49 4.97 -318.77 -1.58 -26.07 16 14 C 0.24 7.28 6.64 38.20 0.25 7.54 16 15 C -0.18 -4.83 8.65 22.42 0.19 -4.64 16 16 C 0.04 0.91 6.32 22.30 0.14 1.05 16 17 Cl -0.04 -0.75 28.95 -2.72 -0.08 -0.83 16 18 C -0.18 -4.08 9.80 22.36 0.22 -3.86 16 19 C 0.13 3.43 7.30 22.39 0.16 3.59 16 20 F -0.13 -3.52 17.18 44.97 0.77 -2.75 16 21 C -0.04 -1.40 7.32 22.51 0.16 -1.23 16 22 F -0.14 -4.93 16.55 44.97 0.74 -4.19 16 23 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 24 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 25 H 0.07 1.68 7.75 -2.38 -0.02 1.67 16 26 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.00 0.05 8.14 -2.38 -0.02 0.03 16 28 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 29 H 0.40 14.95 8.09 -92.71 -0.75 14.20 16 30 H 0.16 3.86 6.15 -2.91 -0.02 3.85 16 31 H 0.17 2.86 8.06 -2.91 -0.02 2.84 16 Total: -1.00 -57.66 293.43 5.33 -52.33 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: 0.42 Total: 10.91 kcal Atomic # 6 Polarization: -24.10 SS G_CDS: 2.74 Total: -21.36 kcal Atomic # 7 Polarization: -78.36 SS G_CDS: -1.30 Total: -79.66 kcal Atomic # 9 Polarization: -8.46 SS G_CDS: 1.52 Total: -6.94 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -0.08 Total: -0.83 kcal Total: -57.66 5.33 -52.33 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695860821.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.494 kcal (2) G-P(sol) polarization free energy of solvation -57.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds