Wall clock time and date at job start Mon Mar 30 2020 07:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47375 * 98.64054 * 3 2 1 5 5 C 1.36771 * 119.99906 * 95.37768 * 4 3 2 6 6 H 1.08000 * 120.00127 * 213.37761 * 5 4 3 7 7 C 1.39047 * 119.99945 * 33.37937 * 5 4 3 8 8 N 1.31376 * 120.00294 * 23.81994 * 7 5 4 9 9 Si 1.86809 * 120.00226 * 203.82341 * 7 5 4 10 10 H 1.48498 * 109.46938 * 84.98590 * 9 7 5 11 11 H 1.48492 * 109.47134 * 204.98850 * 9 7 5 12 12 H 1.48505 * 109.46555 * 324.99120 * 9 7 5 13 13 C 1.34772 * 120.00136 * 275.37930 * 4 3 2 14 14 O 1.21852 * 120.00268 * 179.97438 * 13 4 3 15 15 C 1.41275 * 119.99821 * 0.02562 * 13 4 3 16 16 C 1.35805 * 120.00171 * 180.02562 * 15 13 4 17 17 C 1.41502 * 120.00363 * 180.02562 * 16 15 13 18 18 C 1.37123 * 125.48034 * 179.71918 * 17 16 15 19 19 C 1.37410 * 113.21143 * 179.79435 * 18 17 16 20 20 C 1.33878 * 115.13170 * 0.49818 * 19 18 17 21 21 C 1.50700 * 124.48963 * 179.72420 * 20 19 18 22 22 S 1.70608 * 111.02623 * 359.72132 * 20 19 18 23 23 H 4.40646 * 5.51491 * 180.02562 * 4 1 2 24 24 H 1.08998 * 109.47160 * 338.63982 * 3 2 1 25 25 H 1.09003 * 109.46706 * 218.64011 * 3 2 1 26 26 H 0.97003 * 120.00458 * 179.97438 * 8 7 5 27 27 H 1.07995 * 120.00230 * 359.97438 * 15 13 4 28 28 H 1.08006 * 119.99840 * 359.97438 * 16 15 13 29 29 H 1.08003 * 123.38758 * 359.97403 * 18 17 16 30 30 H 1.08001 * 122.43354 * 180.21466 * 19 18 17 31 31 H 1.08995 * 109.47799 * 179.97438 * 21 20 19 32 32 H 1.09000 * 109.47022 * 299.97384 * 21 20 19 33 33 H 1.09007 * 109.47164 * 59.96719 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 0.2084 -1.3655 5 6 3.4664 1.4657 -1.7891 6 1 3.3056 1.7486 -2.8190 7 6 4.0110 2.3797 -0.8940 8 7 4.6339 1.9544 0.1817 9 14 3.8569 4.2126 -1.2207 10 1 2.5525 4.6994 -0.7044 11 1 4.9604 4.9320 -0.5353 12 1 3.9353 4.4630 -2.6824 13 6 3.2562 -0.8395 -2.2043 14 8 3.6619 -0.6666 -3.3402 15 6 2.9127 -2.1381 -1.7668 16 6 3.0361 -3.1941 -2.6118 17 6 2.6914 -4.4948 -2.1739 18 6 2.7666 -5.6355 -2.9311 19 6 2.3735 -6.7634 -2.2517 20 6 1.9800 -6.5581 -0.9886 21 6 1.5023 -7.6419 -0.0568 22 16 2.0909 -4.9070 -0.5736 23 1 -1.0501 0.0002 0.0000 24 1 3.0097 -0.9562 0.3743 25 1 3.0089 0.8036 0.6417 26 1 5.0142 2.5921 0.8060 27 1 2.5527 -2.2913 -0.7602 28 1 3.3964 -3.0410 -3.6184 29 1 3.1038 -5.6467 -3.9571 30 1 2.3772 -7.7435 -2.7052 31 1 1.2448 -7.2045 0.9077 32 1 0.6232 -8.1257 -0.4826 33 1 2.2933 -8.3796 0.0783 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701294592.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:30:50 Heat of formation + Delta-G solvation = 75.555433 kcal Electronic energy + Delta-G solvation = -17780.815169 eV Core-core repulsion = 14900.704412 eV Total energy + Delta-G solvation = -2880.110757 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 275.072 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.92952 -37.95619 -35.35633 -33.89025 -32.62736 -31.38093 -30.85866 -27.23107 -26.45648 -24.77407 -23.32595 -21.76486 -19.15951 -18.70266 -18.09391 -16.75031 -16.41810 -16.15734 -15.18019 -14.87984 -14.35374 -14.14657 -14.00858 -13.37390 -13.13932 -12.80099 -12.68202 -12.41094 -12.31304 -12.06971 -11.83006 -11.64125 -11.37442 -11.08711 -10.79539 -10.53740 -10.44125 -9.84431 -9.78743 -9.60117 -9.02674 -8.53834 -8.45366 -7.79380 -7.57292 -6.53589 -4.02916 0.48836 1.68657 2.11846 2.13668 3.03744 3.16199 3.20792 3.24139 3.36597 3.49492 4.07828 4.37541 4.82442 4.82733 4.91344 5.13199 5.27426 5.31646 5.37323 5.55972 5.56385 5.63266 5.81144 5.96729 6.11868 6.26746 6.38916 6.48906 6.58673 6.81677 6.82717 6.88592 7.43972 8.08353 8.25832 8.35946 9.05123 9.21632 9.87870 10.50572 Molecular weight = 275.07amu Principal moments of inertia in cm(-1) A = 0.030777 B = 0.004332 C = 0.004047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.562993 B = 6461.648774 C = 6917.232419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.169 4.169 3 C 0.193 3.807 4 N -0.422 5.422 5 C -0.300 4.300 6 H 0.100 0.900 7 C 0.036 3.964 8 N -0.858 5.858 9 Si 0.922 3.078 10 H -0.274 1.274 11 H -0.282 1.282 12 H -0.266 1.266 13 C 0.478 3.522 14 O -0.585 6.585 15 C -0.165 4.165 16 C -0.048 4.048 17 C -0.158 4.158 18 C -0.129 4.129 19 C -0.141 4.141 20 C -0.234 4.234 21 C -0.078 4.078 22 S 0.181 5.819 23 H 0.210 0.790 24 H 0.079 0.921 25 H 0.137 0.863 26 H 0.274 0.726 27 H 0.113 0.887 28 H 0.142 0.858 29 H 0.143 0.857 30 H 0.133 0.867 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.104 -13.757 3.030 15.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C -0.170 4.170 3 C 0.070 3.930 4 N -0.138 5.138 5 C -0.428 4.428 6 H 0.118 0.882 7 C -0.170 4.170 8 N -0.495 5.495 9 Si 0.748 3.252 10 H -0.200 1.200 11 H -0.207 1.207 12 H -0.191 1.191 13 C 0.272 3.728 14 O -0.472 6.472 15 C -0.189 4.189 16 C -0.071 4.071 17 C -0.275 4.275 18 C -0.159 4.159 19 C -0.172 4.172 20 C -0.352 4.352 21 C -0.136 4.136 22 S 0.449 5.551 23 H 0.227 0.773 24 H 0.097 0.903 25 H 0.154 0.846 26 H 0.084 0.916 27 H 0.131 0.869 28 H 0.160 0.840 29 H 0.161 0.839 30 H 0.151 0.849 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.082 -12.752 3.975 14.677 hybrid contribution 0.009 -0.021 -1.210 1.210 sum -6.073 -12.773 2.765 14.411 Atomic orbital electron populations 1.24674 0.95662 1.03765 1.01693 1.24315 0.95415 0.98163 0.99156 1.18796 0.81828 1.04091 0.88280 1.43444 1.53404 1.06911 1.10070 1.19593 1.38818 0.86461 0.97958 0.88247 1.25434 0.94098 1.01144 0.96303 1.69880 1.30528 1.35899 1.13226 0.86000 0.78063 0.81848 0.79304 1.20015 1.20736 1.19057 1.16804 0.84155 0.84501 0.87346 1.90679 1.51382 1.85591 1.19513 1.22407 1.02033 0.94819 0.99618 1.20501 0.97857 0.88388 1.00385 1.22686 1.09443 0.97834 0.97545 1.20792 1.03380 0.90752 1.00952 1.19791 1.03789 0.99825 0.93800 1.24045 1.10500 1.00511 1.00186 1.20269 1.01143 0.95283 0.96949 1.83160 1.60783 0.98495 1.12671 0.77337 0.90338 0.84607 0.91606 0.86936 0.84047 0.83905 0.84882 0.91660 0.90934 0.90903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -4.29 19.25 29.55 0.57 -3.72 16 2 C -0.17 -3.49 13.31 -37.12 -0.49 -3.99 16 3 C 0.19 4.33 5.10 -6.83 -0.03 4.29 16 4 N -0.42 -10.92 2.52 -121.30 -0.31 -11.23 16 5 C -0.30 -8.32 8.97 -15.05 -0.13 -8.45 16 6 H 0.10 2.88 7.70 -52.49 -0.40 2.48 16 7 C 0.04 0.92 4.88 -17.45 -0.09 0.84 16 8 N -0.86 -22.31 11.40 55.50 0.63 -21.67 16 9 Si 0.92 20.17 29.62 -169.99 -5.03 15.14 16 10 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 11 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 12 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 13 C 0.48 12.22 7.33 -15.11 -0.11 12.11 16 14 O -0.59 -16.77 15.92 5.05 0.08 -16.69 16 15 C -0.16 -3.42 8.43 -39.30 -0.33 -3.76 16 16 C -0.05 -0.89 9.37 -39.21 -0.37 -1.26 16 17 C -0.16 -2.48 6.21 -38.74 -0.24 -2.72 16 18 C -0.13 -1.75 10.25 -40.29 -0.41 -2.17 16 19 C -0.14 -1.71 9.99 -41.41 -0.41 -2.12 16 20 C -0.23 -2.80 6.28 -35.84 -0.23 -3.03 16 21 C -0.08 -0.68 10.33 36.01 0.37 -0.31 16 22 S 0.18 2.49 21.69 -107.50 -2.33 0.16 16 23 H 0.21 2.81 7.80 -54.09 -0.42 2.39 16 24 H 0.08 1.58 6.40 -51.93 -0.33 1.25 16 25 H 0.14 3.24 5.37 -51.93 -0.28 2.96 16 26 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 27 H 0.11 2.13 5.05 -52.49 -0.27 1.86 16 28 H 0.14 2.69 7.46 -52.48 -0.39 2.30 16 29 H 0.14 1.69 8.06 -52.48 -0.42 1.27 16 30 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 31 H 0.06 0.53 8.11 -51.93 -0.42 0.10 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 310.75 15.07 4.68 4.68 Total: -1.00 -30.95 310.75 -7.53 -38.47 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -3.34 Total: 5.41 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: -1.91 Total: -14.28 kcal Atomic # 7 Polarization: -33.23 SS G_CDS: 0.33 Total: -32.90 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: 0.08 Total: -16.69 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.03 Total: 15.14 kcal Atomic # 16 Polarization: 2.49 SS G_CDS: -2.33 Total: 0.16 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.95 -7.53 -38.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701294592.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.029 kcal (2) G-P(sol) polarization free energy of solvation -30.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds