Wall clock time and date at job start Mon Mar 30 2020 07:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47375 * 98.64054 * 3 2 1 5 5 C 1.36771 * 119.99906 * 95.37768 * 4 3 2 6 6 H 1.08000 * 120.00127 * 213.37761 * 5 4 3 7 7 C 1.39047 * 119.99945 * 33.37937 * 5 4 3 8 8 N 1.31376 * 120.00294 * 23.81994 * 7 5 4 9 9 Si 1.86809 * 120.00226 * 203.82341 * 7 5 4 10 10 H 1.48498 * 109.46938 * 84.98590 * 9 7 5 11 11 H 1.48492 * 109.47134 * 204.98850 * 9 7 5 12 12 H 1.48505 * 109.46555 * 324.99120 * 9 7 5 13 13 C 1.34772 * 120.00136 * 275.37930 * 4 3 2 14 14 O 1.21852 * 120.00268 * 179.97438 * 13 4 3 15 15 C 1.41275 * 119.99821 * 0.02562 * 13 4 3 16 16 C 1.35805 * 120.00171 * 180.02562 * 15 13 4 17 17 C 1.41502 * 120.00363 * 180.02562 * 16 15 13 18 18 C 1.37123 * 125.48034 * 179.71918 * 17 16 15 19 19 C 1.37410 * 113.21143 * 179.79435 * 18 17 16 20 20 C 1.33878 * 115.13170 * 0.49818 * 19 18 17 21 21 C 1.50700 * 124.48963 * 179.72420 * 20 19 18 22 22 S 1.70608 * 111.02623 * 359.72132 * 20 19 18 23 23 H 4.40646 * 5.51491 * 180.02562 * 4 1 2 24 24 H 1.08998 * 109.47160 * 338.63982 * 3 2 1 25 25 H 1.09003 * 109.46706 * 218.64011 * 3 2 1 26 26 H 0.97003 * 120.00458 * 179.97438 * 8 7 5 27 27 H 1.07995 * 120.00230 * 359.97438 * 15 13 4 28 28 H 1.08006 * 119.99840 * 359.97438 * 16 15 13 29 29 H 1.08003 * 123.38758 * 359.97403 * 18 17 16 30 30 H 1.08001 * 122.43354 * 180.21466 * 19 18 17 31 31 H 1.08995 * 109.47799 * 179.97438 * 21 20 19 32 32 H 1.09000 * 109.47022 * 299.97384 * 21 20 19 33 33 H 1.09007 * 109.47164 * 59.96719 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1343 0.2084 -1.3655 5 6 3.4664 1.4657 -1.7891 6 1 3.3056 1.7486 -2.8190 7 6 4.0110 2.3797 -0.8940 8 7 4.6339 1.9544 0.1817 9 14 3.8569 4.2126 -1.2207 10 1 2.5525 4.6994 -0.7044 11 1 4.9604 4.9320 -0.5353 12 1 3.9353 4.4630 -2.6824 13 6 3.2562 -0.8395 -2.2043 14 8 3.6619 -0.6666 -3.3402 15 6 2.9127 -2.1381 -1.7668 16 6 3.0361 -3.1941 -2.6118 17 6 2.6914 -4.4948 -2.1739 18 6 2.7666 -5.6355 -2.9311 19 6 2.3735 -6.7634 -2.2517 20 6 1.9800 -6.5581 -0.9886 21 6 1.5023 -7.6419 -0.0568 22 16 2.0909 -4.9070 -0.5736 23 1 -1.0501 0.0002 0.0000 24 1 3.0097 -0.9562 0.3743 25 1 3.0089 0.8036 0.6417 26 1 5.0142 2.5921 0.8060 27 1 2.5527 -2.2913 -0.7602 28 1 3.3964 -3.0410 -3.6184 29 1 3.1038 -5.6467 -3.9571 30 1 2.3772 -7.7435 -2.7052 31 1 1.2448 -7.2045 0.9077 32 1 0.6232 -8.1257 -0.4826 33 1 2.2933 -8.3796 0.0783 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701294592.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:30:50 Heat of formation + Delta-G solvation = 58.269332 kcal Electronic energy + Delta-G solvation = -17781.564750 eV Core-core repulsion = 14900.704412 eV Total energy + Delta-G solvation = -2880.860339 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 275.072 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.76800 -39.06718 -37.20138 -35.31302 -34.36218 -33.13646 -31.99182 -28.77675 -28.02387 -26.41411 -24.44265 -23.21704 -20.39963 -20.27986 -19.82099 -18.44973 -17.99341 -17.44700 -16.97333 -16.14011 -16.08527 -15.81380 -14.98562 -14.85860 -14.45606 -14.30019 -14.16750 -13.80258 -13.61891 -13.33684 -13.26360 -13.00907 -12.82956 -12.72983 -12.43585 -12.17055 -11.65537 -11.41053 -11.29813 -11.12425 -10.81772 -10.52377 -9.72629 -9.52457 -8.88869 -8.47257 -6.09467 -0.76460 0.59335 0.84652 1.06195 1.38330 1.40829 1.51567 1.78752 1.88275 1.97926 2.28325 2.53556 3.02210 3.21519 3.71037 3.93580 3.98734 4.06386 4.34423 4.40989 4.43911 4.63808 4.73811 4.77345 5.00722 5.05393 5.11950 5.15184 5.19981 5.28691 5.38301 5.45016 5.59444 6.10607 6.42341 6.75528 7.07270 7.29830 7.94830 8.56799 Molecular weight = 275.07amu Principal moments of inertia in cm(-1) A = 0.030777 B = 0.004332 C = 0.004047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.562993 B = 6461.648774 C = 6917.232419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.230 4.230 3 C 0.202 3.798 4 N -0.437 5.437 5 C -0.347 4.347 6 H 0.069 0.931 7 C 0.007 3.993 8 N -0.879 5.879 9 Si 0.986 3.014 10 H -0.264 1.264 11 H -0.268 1.268 12 H -0.273 1.273 13 C 0.473 3.527 14 O -0.637 6.637 15 C -0.214 4.214 16 C 0.003 3.997 17 C -0.221 4.221 18 C -0.093 4.093 19 C -0.159 4.159 20 C -0.205 4.205 21 C -0.083 4.083 22 S 0.179 5.821 23 H 0.256 0.744 24 H 0.090 0.910 25 H 0.117 0.883 26 H 0.281 0.719 27 H 0.128 0.872 28 H 0.129 0.871 29 H 0.160 0.840 30 H 0.167 0.833 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.863 -16.539 3.975 18.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.231 4.231 3 C 0.079 3.921 4 N -0.153 5.153 5 C -0.474 4.474 6 H 0.086 0.914 7 C -0.197 4.197 8 N -0.516 5.516 9 Si 0.808 3.192 10 H -0.189 1.189 11 H -0.193 1.193 12 H -0.198 1.198 13 C 0.268 3.732 14 O -0.527 6.527 15 C -0.236 4.236 16 C -0.020 4.020 17 C -0.338 4.338 18 C -0.125 4.125 19 C -0.188 4.188 20 C -0.324 4.324 21 C -0.141 4.141 22 S 0.447 5.553 23 H 0.272 0.728 24 H 0.108 0.892 25 H 0.134 0.866 26 H 0.091 0.909 27 H 0.145 0.855 28 H 0.147 0.853 29 H 0.178 0.822 30 H 0.184 0.816 31 H 0.090 0.910 32 H 0.111 0.889 33 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.848 -15.530 4.969 18.096 hybrid contribution 0.459 0.367 -1.541 1.649 sum -7.389 -15.163 3.428 17.212 Atomic orbital electron populations 1.25659 0.96422 1.00558 0.98376 1.24207 0.95659 1.01105 1.02116 1.18600 0.83518 1.03804 0.86157 1.43578 1.54007 1.06413 1.11298 1.19469 1.42110 0.88410 0.97458 0.91356 1.26168 0.92911 1.04792 0.95817 1.69934 1.30534 1.37345 1.13745 0.85077 0.78725 0.76675 0.78711 1.18866 1.19266 1.19787 1.17521 0.82907 0.86148 0.86629 1.90606 1.53834 1.86723 1.21539 1.22019 1.07615 0.92870 1.01133 1.20565 0.93018 0.89414 0.99015 1.22562 1.14379 0.97132 0.99708 1.21235 0.99392 0.90439 1.01422 1.20121 1.04148 1.00693 0.93863 1.24672 1.07032 1.00097 1.00598 1.20486 1.02517 0.94556 0.96571 1.83238 1.60334 1.00110 1.11594 0.72793 0.89244 0.86567 0.90925 0.85451 0.85338 0.82234 0.81591 0.90950 0.88883 0.88939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.56 19.25 74.32 1.43 -5.13 16 2 C -0.23 -9.64 13.31 31.12 0.41 -9.22 16 3 C 0.20 9.52 5.10 84.57 0.43 9.95 16 4 N -0.44 -24.18 2.52 -655.85 -1.65 -25.83 16 5 C -0.35 -20.54 8.97 84.12 0.75 -19.79 16 6 H 0.07 4.33 7.70 -2.91 -0.02 4.31 16 7 C 0.01 0.37 4.88 84.96 0.41 0.79 16 8 N -0.88 -47.40 11.40 21.68 0.25 -47.15 16 9 Si 0.99 42.66 29.62 68.60 2.03 44.69 16 10 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 11 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 12 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 13 C 0.47 25.88 7.33 84.99 0.62 26.50 16 14 O -0.64 -39.32 15.92 -4.83 -0.08 -39.40 16 15 C -0.21 -9.31 8.43 22.45 0.19 -9.12 16 16 C 0.00 0.10 9.37 22.51 0.21 0.31 16 17 C -0.22 -6.71 6.21 22.81 0.14 -6.57 16 18 C -0.09 -2.27 10.25 21.81 0.22 -2.05 16 19 C -0.16 -3.14 9.99 21.08 0.21 -2.93 16 20 C -0.20 -4.07 6.28 24.69 0.16 -3.92 16 21 C -0.08 -1.03 10.33 71.24 0.74 -0.30 16 22 S 0.18 4.58 21.69 -56.49 -1.23 3.35 16 23 H 0.26 5.81 7.80 -4.41 -0.03 5.77 16 24 H 0.09 3.83 6.40 -2.39 -0.02 3.81 16 25 H 0.12 5.87 5.37 -2.39 -0.01 5.85 16 26 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 27 H 0.13 5.03 5.05 -2.91 -0.01 5.01 16 28 H 0.13 5.11 7.46 -2.91 -0.02 5.09 16 29 H 0.16 3.28 8.06 -2.91 -0.02 3.26 16 30 H 0.17 2.26 8.06 -2.91 -0.02 2.24 16 31 H 0.07 0.85 8.11 -2.39 -0.02 0.83 16 32 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 Total: -1.00 -72.81 310.75 6.38 -66.42 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: 1.12 Total: 19.37 kcal Atomic # 6 Polarization: -27.39 SS G_CDS: 5.93 Total: -21.46 kcal Atomic # 7 Polarization: -71.58 SS G_CDS: -1.40 Total: -72.98 kcal Atomic # 8 Polarization: -39.32 SS G_CDS: -0.08 Total: -39.40 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Atomic # 16 Polarization: 4.58 SS G_CDS: -1.23 Total: 3.35 kcal Total: -72.81 6.38 -66.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701294592.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.691 kcal (2) G-P(sol) polarization free energy of solvation -72.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds