Wall clock time and date at job start Mon Mar 30 2020 07:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38547 * 120.82675 * 2 1 4 4 C 1.38221 * 119.24220 * 180.02562 * 3 2 1 5 5 N 1.31883 * 120.91864 * 0.02562 * 4 3 2 6 6 C 1.31791 * 121.79342 * 0.02562 * 5 4 3 7 7 C 1.50707 * 119.66524 * 180.02562 * 6 5 4 8 8 C 1.38877 * 120.66535 * 359.71546 * 6 5 4 9 9 N 1.39979 * 120.49018 * 180.31061 * 8 6 5 10 10 C 1.34783 * 119.99777 * 237.16858 * 9 8 6 11 11 O 1.21583 * 120.00147 * 354.27138 * 10 9 8 12 12 N 1.34779 * 119.99681 * 174.26160 * 10 9 8 13 13 C 1.47062 * 136.05848 * 359.63753 * 12 10 9 14 14 C 1.53756 * 87.89113 * 152.95621 * 13 12 10 15 15 C 1.50697 * 114.26710 * 139.78864 * 14 13 12 16 16 H 1.07994 * 120.00328 * 266.47728 * 15 14 13 17 17 C 1.37878 * 120.00042 * 86.48092 * 15 14 13 18 18 N 1.31516 * 119.99546 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00260 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47155 * 89.99751 * 19 17 15 21 21 H 1.48499 * 109.47401 * 209.99838 * 19 17 15 22 22 H 1.48494 * 109.47020 * 330.00083 * 19 17 15 23 23 C 1.47060 * 136.05594 * 179.97438 * 12 10 9 24 24 H 1.08999 * 109.47174 * 83.00043 * 1 2 3 25 25 H 1.09003 * 109.47236 * 323.00490 * 1 2 3 26 26 H 1.09000 * 109.47538 * 203.00810 * 1 2 3 27 27 H 1.08002 * 120.37441 * 0.02562 * 3 2 1 28 28 H 1.08001 * 119.54053 * 179.97438 * 4 3 2 29 29 H 1.09002 * 109.47418 * 95.47092 * 7 6 5 30 30 H 1.09005 * 109.46805 * 215.47028 * 7 6 5 31 31 H 1.09003 * 109.47014 * 335.46886 * 7 6 5 32 32 H 0.96997 * 120.00389 * 57.17089 * 9 8 6 33 33 H 1.08997 * 113.46921 * 267.69410 * 13 12 10 34 34 H 1.09005 * 113.46979 * 38.12692 * 13 12 10 35 35 H 1.09002 * 114.39429 * 272.67807 * 14 13 12 36 36 H 0.97010 * 119.99710 * 180.02562 * 18 17 15 37 37 H 1.09004 * 113.47386 * 321.87523 * 23 12 10 38 38 H 1.09009 * 113.46444 * 92.25505 * 23 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2169 1.1897 0.0000 4 6 3.5986 1.1515 -0.0005 5 7 4.2447 0.0018 -0.0016 6 6 3.6083 -1.1523 -0.0026 7 6 4.3949 -2.4378 -0.0032 8 6 2.2202 -1.1958 0.0033 9 7 1.5481 -2.4236 0.0087 10 6 0.6653 -2.7129 -0.9679 11 8 0.3747 -1.8696 -1.7940 12 7 0.1050 -3.9372 -1.0287 13 6 0.1964 -5.1833 -0.2530 14 6 -1.2361 -5.5056 -0.7093 15 6 -1.4626 -6.9528 -1.0630 16 1 -1.3572 -7.2815 -2.0863 17 6 -1.8045 -7.8574 -0.0802 18 7 -1.9325 -7.4572 1.1660 19 14 -2.0860 -9.6512 -0.5187 20 1 -0.8049 -10.3943 -0.4099 21 1 -3.0801 -10.2390 0.4148 22 1 -2.5967 -9.7464 -1.9099 23 6 -0.8624 -4.6166 -1.9034 24 1 -0.3633 0.1252 -1.0200 25 1 -0.3634 0.8208 0.6184 26 1 -0.3634 -0.9459 0.4017 27 1 1.6966 2.1362 0.0004 28 1 4.1568 2.0760 -0.0010 29 1 4.5006 -2.7996 1.0196 30 1 3.8708 -3.1841 -0.6002 31 1 5.3822 -2.2595 -0.4293 32 1 1.7176 -3.0662 0.7152 33 1 0.9414 -5.8800 -0.6371 34 1 0.2851 -5.0205 0.8211 35 1 -2.0160 -5.0909 -0.0705 36 1 -2.1727 -8.0937 1.8576 37 1 -1.6757 -3.9712 -2.2352 38 1 -0.3968 -5.1632 -2.7236 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596907607.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:52 Heat of formation + Delta-G solvation = 42.461500 kcal Electronic energy + Delta-G solvation = -21030.713660 eV Core-core repulsion = 17874.540817 eV Total energy + Delta-G solvation = -3156.172843 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 275.137 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.88510 -39.43363 -37.51484 -34.77361 -33.95383 -32.75749 -31.28543 -29.01476 -27.92131 -27.04600 -25.14824 -25.01603 -22.73957 -21.32012 -20.60406 -19.18451 -17.77435 -17.04832 -16.69373 -16.62917 -15.67760 -14.98350 -14.88843 -14.51264 -14.37595 -13.80215 -13.54179 -13.16451 -12.85440 -12.69331 -12.44314 -12.28910 -12.20693 -12.11650 -11.61038 -11.55832 -11.38141 -11.03470 -10.84269 -10.40500 -10.12220 -9.97933 -9.46446 -9.30124 -9.19066 -9.14395 -8.64430 -8.44751 -7.83228 -6.24051 -4.29751 1.06425 1.29576 2.86349 3.20254 3.28477 3.31426 3.52424 3.78240 4.21072 4.30201 4.39226 4.66943 4.80448 5.05930 5.10291 5.31146 5.46212 5.50619 5.55151 5.62838 5.81700 5.90487 5.99467 6.06696 6.09764 6.13719 6.23598 6.33733 6.37255 6.42847 6.48663 6.54984 6.66093 6.95724 7.47411 7.52355 7.73865 7.98555 8.11749 8.55570 8.74624 8.97203 9.37619 10.85623 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.034066 B = 0.003923 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.741642 B = 7135.770391 C = 7496.130903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.026 4.026 3 C -0.172 4.172 4 C 0.090 3.910 5 N -0.481 5.481 6 C 0.118 3.882 7 C -0.103 4.103 8 C 0.117 3.883 9 N -0.689 5.689 10 C 0.727 3.273 11 O -0.593 6.593 12 N -0.661 5.661 13 C 0.097 3.903 14 C 0.037 3.963 15 C -0.518 4.518 16 H 0.064 0.936 17 C 0.069 3.931 18 N -0.886 5.886 19 Si 0.896 3.104 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.272 1.272 23 C 0.122 3.878 24 H 0.090 0.910 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.134 0.866 28 H 0.155 0.845 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.406 0.594 33 H 0.073 0.927 34 H 0.056 0.944 35 H 0.069 0.931 36 H 0.264 0.736 37 H 0.057 0.943 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.115 11.282 1.032 13.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.036 4.036 3 C -0.193 4.193 4 C -0.067 4.067 5 N -0.191 5.191 6 C -0.022 4.022 7 C -0.160 4.160 8 C 0.020 3.980 9 N -0.341 5.341 10 C 0.431 3.569 11 O -0.472 6.472 12 N -0.398 5.398 13 C -0.025 4.025 14 C 0.017 3.983 15 C -0.556 4.556 16 H 0.082 0.918 17 C -0.135 4.135 18 N -0.522 5.522 19 Si 0.723 3.277 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.196 1.196 23 C 0.000 4.000 24 H 0.108 0.892 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.152 0.848 28 H 0.172 0.828 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.243 0.757 33 H 0.091 0.909 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 8.818 11.968 0.596 14.878 hybrid contribution -0.860 -1.221 0.269 1.517 sum 7.958 10.748 0.864 13.401 Atomic orbital electron populations 1.20788 0.89690 1.02229 1.03403 1.20468 0.97417 0.91812 0.93928 1.21905 0.95311 0.98236 1.03815 1.22608 0.91709 0.95923 0.96436 1.67498 1.40411 0.97704 1.13479 1.21355 0.89702 0.94570 0.96580 1.20663 1.00120 0.92324 1.02897 1.18053 0.90880 0.85562 1.03483 1.42379 1.44954 1.17519 1.29208 1.15333 0.78355 0.82028 0.81187 1.90867 1.65973 1.47389 1.42937 1.49127 1.46290 1.09065 1.35361 1.23655 1.02659 0.81096 0.95095 1.20380 0.91788 0.94686 0.91409 1.20904 1.48293 0.91668 0.94742 0.91771 1.25024 0.94277 0.99221 0.94943 1.69950 1.46808 1.35089 1.00403 0.86527 0.78136 0.84457 0.78537 1.20497 1.21122 1.19649 1.23251 0.88806 0.91851 0.96092 0.89189 0.92049 0.91616 0.84776 0.82775 0.90444 0.90642 0.90336 0.75720 0.90860 0.92555 0.91290 0.92605 0.92424 0.91002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.52 8.29 36.00 0.30 -1.22 16 2 C -0.03 -0.39 5.52 -104.14 -0.57 -0.96 16 3 C -0.17 -2.10 9.83 -39.47 -0.39 -2.49 16 4 C 0.09 1.09 11.17 -17.54 -0.20 0.89 16 5 N -0.48 -6.80 10.27 -9.32 -0.10 -6.89 16 6 C 0.12 1.70 6.80 -82.37 -0.56 1.14 16 7 C -0.10 -1.22 9.82 36.01 0.35 -0.86 16 8 C 0.12 1.81 5.82 -83.53 -0.49 1.32 16 9 N -0.69 -10.92 3.92 -14.12 -0.06 -10.97 16 10 C 0.73 13.95 7.40 -86.91 -0.64 13.31 16 11 O -0.59 -12.88 14.17 5.29 0.07 -12.80 16 12 N -0.66 -12.91 3.69 -190.89 -0.70 -13.61 16 13 C 0.10 1.93 7.88 -8.38 -0.07 1.86 16 14 C 0.04 0.82 3.79 -91.13 -0.35 0.48 16 15 C -0.52 -12.74 8.83 -34.44 -0.30 -13.04 16 16 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 17 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 18 N -0.89 -23.40 13.26 55.43 0.74 -22.67 16 19 Si 0.90 19.56 29.54 -169.99 -5.02 14.54 16 20 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 21 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 22 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 23 C 0.12 2.46 8.17 -8.53 -0.07 2.39 16 24 H 0.09 1.45 7.16 -51.93 -0.37 1.08 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.06 1.07 6.53 -51.93 -0.34 0.73 16 27 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 28 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 29 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.93 7.64 -51.93 -0.40 0.54 16 31 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.41 5.69 8.53 -40.82 -0.35 5.34 16 33 H 0.07 1.43 8.10 -51.93 -0.42 1.01 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.07 1.70 8.11 -51.93 -0.42 1.28 16 36 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 37 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.07 1.40 8.10 -51.92 -0.42 0.98 16 LS Contribution 322.07 15.07 4.85 4.85 Total: -1.00 -28.94 322.07 -8.51 -37.45 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -5.22 Total: 5.63 kcal Atomic # 6 Polarization: 7.54 SS G_CDS: -3.08 Total: 4.46 kcal Atomic # 7 Polarization: -54.02 SS G_CDS: -0.12 Total: -54.14 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: 0.07 Total: -12.80 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.02 Total: 14.54 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.94 -8.51 -37.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596907607.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.913 kcal (2) G-P(sol) polarization free energy of solvation -28.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds