Wall clock time and date at job start Mon Mar 30 2020 07:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00032 * 2 1 4 4 H 1.48502 * 109.47044 * 264.82515 * 3 2 1 5 5 H 1.48501 * 109.46780 * 24.82128 * 3 2 1 6 6 H 1.48496 * 109.46972 * 144.82251 * 3 2 1 7 7 C 1.37884 * 120.00068 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99596 * 354.70079 * 7 2 1 9 9 C 1.50703 * 119.99826 * 174.69890 * 7 2 1 10 10 H 1.09002 * 109.46917 * 1.07896 * 9 7 2 11 11 N 1.46904 * 109.46800 * 241.08278 * 9 7 2 12 12 C 1.46893 * 110.99941 * 86.24161 * 11 9 7 13 13 C 1.53011 * 109.46952 * 179.97438 * 12 11 9 14 14 H 1.08996 * 109.48162 * 305.00162 * 13 12 11 15 15 C 1.53093 * 109.48079 * 184.97662 * 13 12 11 16 16 C 1.53169 * 109.16096 * 182.39795 * 15 13 12 17 17 C 1.53174 * 109.03884 * 56.98416 * 16 15 13 18 18 C 1.53089 * 109.16316 * 303.01755 * 17 16 15 19 19 O 1.42903 * 109.48459 * 65.03035 * 13 12 11 20 20 C 1.50696 * 109.47224 * 121.08337 * 9 7 2 21 21 C 1.38235 * 119.99851 * 75.17908 * 20 9 7 22 22 C 1.38244 * 119.99630 * 179.79041 * 21 20 9 23 23 C 1.38231 * 119.99712 * 0.44230 * 22 21 20 24 24 C 1.38240 * 120.00571 * 359.81699 * 23 22 21 25 25 C 1.38235 * 119.99700 * 255.45985 * 20 9 7 26 26 H 0.96991 * 120.00188 * 359.97438 * 1 2 3 27 27 H 1.00899 * 110.99831 * 322.28784 * 11 9 7 28 28 H 1.09000 * 109.47690 * 60.00173 * 12 11 9 29 29 H 1.08998 * 109.47688 * 299.99405 * 12 11 9 30 30 H 1.09003 * 109.52486 * 302.30358 * 15 13 12 31 31 H 1.08998 * 109.52102 * 62.48922 * 15 13 12 32 32 H 1.09005 * 109.54413 * 176.84664 * 16 15 13 33 33 H 1.08996 * 109.54697 * 297.11381 * 16 15 13 34 34 H 1.08997 * 109.52574 * 62.92267 * 17 16 15 35 35 H 1.08998 * 109.52637 * 183.11593 * 17 16 15 36 36 H 1.09003 * 109.48661 * 177.59325 * 18 17 16 37 37 H 1.09001 * 109.48157 * 297.61663 * 18 17 16 38 38 H 1.07993 * 120.00394 * 0.02562 * 21 20 9 39 39 H 1.07993 * 120.00010 * 180.27792 * 22 21 20 40 40 H 1.08000 * 119.99862 * 179.83541 * 23 22 21 41 41 H 1.07998 * 120.00050 * 179.97438 * 24 23 22 42 42 H 1.07997 * 120.00156 * 359.97438 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6060 1.9833 -1.3944 5 1 1.3961 2.6817 0.5878 6 1 3.4877 1.4742 0.8066 7 6 2.0046 -1.1941 -0.0005 8 1 1.4680 -2.1274 0.0854 9 6 3.5068 -1.1968 -0.1211 10 1 3.8685 -0.1701 -0.1779 11 7 3.8991 -1.9221 -1.3369 12 6 3.8979 -1.0313 -2.5048 13 6 4.3112 -1.8207 -3.7487 14 1 5.2725 -2.3025 -3.5707 15 6 4.4305 -0.8684 -4.9415 16 6 4.7857 -1.6742 -6.1946 17 6 3.7190 -2.7512 -6.4152 18 6 3.6271 -3.6308 -5.1656 19 8 3.3247 -2.8152 -4.0317 20 6 4.1062 -1.8747 1.0838 21 6 4.0546 -3.2513 1.1994 22 6 4.6083 -3.8735 2.3027 23 6 5.2056 -3.1185 3.2947 24 6 5.2526 -1.7415 3.1817 25 6 4.7027 -1.1196 2.0763 26 1 -0.4850 0.8400 0.0004 27 1 3.3014 -2.7204 -1.4903 28 1 4.6032 -0.2165 -2.3412 29 1 2.8978 -0.6227 -2.6492 30 1 3.4807 -0.3560 -5.0950 31 1 5.2132 -0.1356 -4.7455 32 1 4.8173 -1.0101 -7.0584 33 1 5.7587 -2.1468 -6.0607 34 1 2.7549 -2.2769 -6.5984 35 1 3.9930 -3.3650 -7.2732 36 1 2.8398 -4.3725 -5.3001 37 1 4.5795 -4.1365 -5.0061 38 1 3.5850 -3.8409 0.4260 39 1 4.5720 -4.9492 2.3909 40 1 5.6359 -3.6044 4.1579 41 1 5.7189 -1.1517 3.9569 42 1 4.7394 -0.0439 1.9879 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055018481.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:52 Heat of formation + Delta-G solvation = -36.545539 kcal Electronic energy + Delta-G solvation = -21536.244031 eV Core-core repulsion = 18480.185529 eV Total energy + Delta-G solvation = -3056.058502 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.21709 -38.49829 -35.55980 -33.45686 -32.67953 -31.61670 -30.17872 -29.79353 -27.07399 -25.37450 -23.76257 -22.58554 -21.95998 -21.06863 -20.14878 -19.61603 -17.20717 -16.25312 -16.07562 -15.70568 -14.85241 -14.74945 -14.58850 -14.24205 -14.13903 -13.78127 -12.97794 -12.91983 -12.87550 -12.66363 -12.50353 -12.14864 -11.99178 -11.74031 -11.50175 -11.16579 -11.03719 -11.00118 -10.87833 -10.53793 -10.44531 -10.29037 -9.88326 -9.82966 -9.38447 -9.17290 -8.69886 -8.16794 -7.87998 -7.26982 -6.20818 -4.21866 2.16382 2.23024 3.17540 3.25586 3.27202 4.07714 4.27956 4.57790 4.78882 4.85757 4.94072 5.04370 5.17380 5.36661 5.41713 5.57331 5.58009 5.61658 5.65758 5.75118 5.80036 5.81708 5.90090 5.98830 6.02290 6.10292 6.13404 6.26437 6.34711 6.35640 6.45364 6.53930 6.68161 6.80173 6.89111 7.19354 7.29033 7.44197 7.56207 7.60667 7.81738 8.02603 8.32155 8.58682 8.85642 9.40951 10.91933 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.014315 B = 0.006132 C = 0.004915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.588391 B = 4565.034869 C = 5695.401816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.079 3.921 3 Si 0.870 3.130 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.531 4.531 8 H 0.078 0.922 9 C 0.203 3.797 10 H 0.049 0.951 11 N -0.685 5.685 12 C 0.071 3.929 13 C 0.095 3.905 14 H 0.061 0.939 15 C -0.152 4.152 16 C -0.119 4.119 17 C -0.157 4.157 18 C 0.062 3.938 19 O -0.370 6.370 20 C -0.014 4.014 21 C -0.103 4.103 22 C -0.126 4.126 23 C -0.152 4.152 24 C -0.124 4.124 25 C -0.133 4.133 26 H 0.266 0.734 27 H 0.343 0.657 28 H 0.068 0.932 29 H 0.045 0.955 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.089 0.911 37 H 0.046 0.954 38 H 0.116 0.884 39 H 0.109 0.891 40 H 0.107 0.893 41 H 0.108 0.892 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.505 -3.879 -7.170 13.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.125 4.125 3 Si 0.697 3.303 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.569 4.569 8 H 0.096 0.904 9 C 0.096 3.904 10 H 0.067 0.933 11 N -0.315 5.315 12 C -0.059 4.059 13 C 0.037 3.963 14 H 0.079 0.921 15 C -0.191 4.191 16 C -0.157 4.157 17 C -0.194 4.194 18 C -0.016 4.016 19 O -0.288 6.288 20 C -0.015 4.015 21 C -0.121 4.121 22 C -0.144 4.144 23 C -0.170 4.170 24 C -0.142 4.142 25 C -0.152 4.152 26 H 0.076 0.924 27 H 0.161 0.839 28 H 0.086 0.914 29 H 0.063 0.937 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.107 0.893 37 H 0.064 0.936 38 H 0.134 0.866 39 H 0.127 0.873 40 H 0.125 0.875 41 H 0.126 0.874 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 10.837 -3.700 -6.945 13.393 hybrid contribution -0.494 1.162 -0.262 1.290 sum 10.343 -2.537 -7.207 12.859 Atomic orbital electron populations 1.69895 1.06282 1.27169 1.49082 1.25101 0.94728 0.98864 0.93817 0.86998 0.80348 0.83973 0.78984 1.19866 1.21241 1.18798 1.21500 0.89104 0.95074 1.51270 0.90379 1.18635 0.94047 0.92759 0.84996 0.93349 1.61064 1.57951 1.10408 1.02076 1.21771 1.00501 0.94766 0.88871 1.22208 0.91778 0.88650 0.93634 0.92127 1.22204 1.02662 0.98817 0.95374 1.21558 0.98526 0.97653 0.97968 1.22198 1.00141 0.98424 0.98678 1.22485 1.00728 0.92775 0.85565 1.88029 1.46600 1.47446 1.46760 1.20268 0.91497 0.93504 0.96271 1.20855 0.99339 0.94606 0.97325 1.21018 0.99565 0.98916 0.94905 1.20834 1.02865 0.94068 0.99211 1.20925 1.00836 0.94651 0.97792 1.20989 0.99893 0.99428 0.94897 0.92433 0.83914 0.91404 0.93701 0.91011 0.91071 0.91895 0.92041 0.91135 0.91425 0.89296 0.93620 0.86635 0.87294 0.87476 0.87354 0.87186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.57 13.96 55.43 0.77 -25.79 16 2 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 3 Si 0.87 20.94 27.02 -169.99 -4.59 16.34 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.26 -6.04 6.29 56.52 0.36 -5.68 16 7 C -0.53 -14.43 8.65 -34.44 -0.30 -14.73 16 8 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 9 C 0.20 4.72 2.16 -70.01 -0.15 4.57 16 10 H 0.05 1.15 4.13 -51.93 -0.21 0.93 16 11 N -0.68 -14.28 5.80 -109.18 -0.63 -14.91 16 12 C 0.07 1.37 5.18 -3.82 -0.02 1.35 16 13 C 0.10 1.52 2.88 -26.68 -0.08 1.45 16 14 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 15 C -0.15 -2.05 5.42 -26.60 -0.14 -2.19 16 16 C -0.12 -1.32 6.03 -26.55 -0.16 -1.48 16 17 C -0.16 -1.73 6.14 -26.60 -0.16 -1.90 16 18 C 0.06 0.79 6.84 37.20 0.25 1.04 16 19 O -0.37 -6.28 9.93 -35.23 -0.35 -6.63 16 20 C -0.01 -0.31 4.93 -104.63 -0.52 -0.83 16 21 C -0.10 -2.07 9.28 -39.58 -0.37 -2.43 16 22 C -0.13 -2.21 10.05 -39.58 -0.40 -2.61 16 23 C -0.15 -2.54 10.05 -39.58 -0.40 -2.94 16 24 C -0.12 -2.19 10.05 -39.58 -0.40 -2.59 16 25 C -0.13 -2.72 9.67 -39.58 -0.38 -3.11 16 26 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 27 H 0.34 7.41 7.50 -39.29 -0.29 7.11 16 28 H 0.07 1.24 8.05 -51.93 -0.42 0.83 16 29 H 0.04 0.99 8.04 -51.93 -0.42 0.58 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.12 2.27 7.46 -52.49 -0.39 1.88 16 39 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 40 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 41 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 42 H 0.11 2.21 7.61 -52.49 -0.40 1.81 16 LS Contribution 336.60 15.07 5.07 5.07 Total: -1.00 -29.56 336.60 -9.86 -39.42 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -6.81 Total: 10.75 kcal Atomic # 6 Polarization: -20.95 SS G_CDS: -3.31 Total: -24.27 kcal Atomic # 7 Polarization: -40.84 SS G_CDS: 0.14 Total: -40.70 kcal Atomic # 8 Polarization: -6.28 SS G_CDS: -0.35 Total: -6.63 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.59 Total: 16.34 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.56 -9.86 -39.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055018481.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.875 kcal (2) G-P(sol) polarization free energy of solvation -29.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds