Wall clock time and date at job start Mon Mar 30 2020 07:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00032 * 2 1 4 4 H 1.48502 * 109.47044 * 264.82515 * 3 2 1 5 5 H 1.48501 * 109.46780 * 24.82128 * 3 2 1 6 6 H 1.48496 * 109.46972 * 144.82251 * 3 2 1 7 7 C 1.37884 * 120.00068 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99596 * 354.70079 * 7 2 1 9 9 C 1.50703 * 119.99826 * 174.69890 * 7 2 1 10 10 H 1.09002 * 109.46917 * 1.07896 * 9 7 2 11 11 N 1.46904 * 109.46800 * 241.08278 * 9 7 2 12 12 C 1.46893 * 110.99941 * 86.24161 * 11 9 7 13 13 C 1.53011 * 109.46952 * 179.97438 * 12 11 9 14 14 H 1.08996 * 109.48162 * 305.00162 * 13 12 11 15 15 C 1.53093 * 109.48079 * 184.97662 * 13 12 11 16 16 C 1.53169 * 109.16096 * 182.39795 * 15 13 12 17 17 C 1.53174 * 109.03884 * 56.98416 * 16 15 13 18 18 C 1.53089 * 109.16316 * 303.01755 * 17 16 15 19 19 O 1.42903 * 109.48459 * 65.03035 * 13 12 11 20 20 C 1.50696 * 109.47224 * 121.08337 * 9 7 2 21 21 C 1.38235 * 119.99851 * 75.17908 * 20 9 7 22 22 C 1.38244 * 119.99630 * 179.79041 * 21 20 9 23 23 C 1.38231 * 119.99712 * 0.44230 * 22 21 20 24 24 C 1.38240 * 120.00571 * 359.81699 * 23 22 21 25 25 C 1.38235 * 119.99700 * 255.45985 * 20 9 7 26 26 H 0.96991 * 120.00188 * 359.97438 * 1 2 3 27 27 H 1.00899 * 110.99831 * 322.28784 * 11 9 7 28 28 H 1.09000 * 109.47690 * 60.00173 * 12 11 9 29 29 H 1.08998 * 109.47688 * 299.99405 * 12 11 9 30 30 H 1.09003 * 109.52486 * 302.30358 * 15 13 12 31 31 H 1.08998 * 109.52102 * 62.48922 * 15 13 12 32 32 H 1.09005 * 109.54413 * 176.84664 * 16 15 13 33 33 H 1.08996 * 109.54697 * 297.11381 * 16 15 13 34 34 H 1.08997 * 109.52574 * 62.92267 * 17 16 15 35 35 H 1.08998 * 109.52637 * 183.11593 * 17 16 15 36 36 H 1.09003 * 109.48661 * 177.59325 * 18 17 16 37 37 H 1.09001 * 109.48157 * 297.61663 * 18 17 16 38 38 H 1.07993 * 120.00394 * 0.02562 * 21 20 9 39 39 H 1.07993 * 120.00010 * 180.27792 * 22 21 20 40 40 H 1.08000 * 119.99862 * 179.83541 * 23 22 21 41 41 H 1.07998 * 120.00050 * 179.97438 * 24 23 22 42 42 H 1.07997 * 120.00156 * 359.97438 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6060 1.9833 -1.3944 5 1 1.3961 2.6817 0.5878 6 1 3.4877 1.4742 0.8066 7 6 2.0046 -1.1941 -0.0005 8 1 1.4680 -2.1274 0.0854 9 6 3.5068 -1.1968 -0.1211 10 1 3.8685 -0.1701 -0.1779 11 7 3.8991 -1.9221 -1.3369 12 6 3.8979 -1.0313 -2.5048 13 6 4.3112 -1.8207 -3.7487 14 1 5.2725 -2.3025 -3.5707 15 6 4.4305 -0.8684 -4.9415 16 6 4.7857 -1.6742 -6.1946 17 6 3.7190 -2.7512 -6.4152 18 6 3.6271 -3.6308 -5.1656 19 8 3.3247 -2.8152 -4.0317 20 6 4.1062 -1.8747 1.0838 21 6 4.0546 -3.2513 1.1994 22 6 4.6083 -3.8735 2.3027 23 6 5.2056 -3.1185 3.2947 24 6 5.2526 -1.7415 3.1817 25 6 4.7027 -1.1196 2.0763 26 1 -0.4850 0.8400 0.0004 27 1 3.3014 -2.7204 -1.4903 28 1 4.6032 -0.2165 -2.3412 29 1 2.8978 -0.6227 -2.6492 30 1 3.4807 -0.3560 -5.0950 31 1 5.2132 -0.1356 -4.7455 32 1 4.8173 -1.0101 -7.0584 33 1 5.7587 -2.1468 -6.0607 34 1 2.7549 -2.2769 -6.5984 35 1 3.9930 -3.3650 -7.2732 36 1 2.8398 -4.3725 -5.3001 37 1 4.5795 -4.1365 -5.0061 38 1 3.5850 -3.8409 0.4260 39 1 4.5720 -4.9492 2.3909 40 1 5.6359 -3.6044 4.1579 41 1 5.7189 -1.1517 3.9569 42 1 4.7394 -0.0439 1.9879 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055018481.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:51 Heat of formation + Delta-G solvation = -54.843501 kcal Electronic energy + Delta-G solvation = -21537.037491 eV Core-core repulsion = 18480.185529 eV Total energy + Delta-G solvation = -3056.851961 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.44455 -39.95772 -37.20857 -34.56340 -34.50855 -33.21714 -31.62534 -31.14894 -28.77604 -26.86879 -24.99118 -24.14816 -23.38410 -22.47266 -21.43763 -21.02675 -19.27997 -17.69628 -17.35319 -16.90154 -16.66293 -16.27919 -15.88266 -15.55088 -15.32464 -15.10306 -14.87023 -14.40480 -14.29252 -14.11659 -13.75239 -13.66399 -13.53835 -13.16825 -13.06983 -12.84557 -12.50943 -12.19779 -12.08232 -11.96750 -11.82600 -11.78890 -11.50255 -11.29027 -11.14850 -10.79968 -10.30304 -9.62889 -9.43712 -9.03261 -8.38478 -6.43126 0.69293 0.75504 1.23844 1.26592 1.35465 2.23668 2.91505 2.92944 3.17889 3.47645 3.90061 3.96881 4.01566 4.14469 4.17723 4.26691 4.30407 4.36831 4.41873 4.50642 4.54257 4.58098 4.71664 4.74083 4.85488 4.91941 4.92639 4.97303 5.01262 5.08077 5.14423 5.23329 5.31130 5.39569 5.41355 5.43658 5.76071 5.80759 5.98800 6.03963 6.32560 6.40689 6.45522 6.62538 6.73397 7.23547 8.78263 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.014315 B = 0.006132 C = 0.004915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.588391 B = 4565.034869 C = 5695.401816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.022 3.978 3 Si 0.928 3.072 4 H -0.262 1.262 5 H -0.284 1.284 6 H -0.243 1.243 7 C -0.527 4.527 8 H 0.032 0.968 9 C 0.211 3.789 10 H 0.045 0.955 11 N -0.672 5.672 12 C 0.069 3.931 13 C 0.102 3.898 14 H 0.070 0.930 15 C -0.151 4.151 16 C -0.115 4.115 17 C -0.153 4.153 18 C 0.053 3.947 19 O -0.406 6.406 20 C -0.048 4.048 21 C -0.122 4.122 22 C -0.125 4.125 23 C -0.142 4.142 24 C -0.121 4.121 25 C -0.153 4.153 26 H 0.266 0.734 27 H 0.335 0.665 28 H 0.079 0.921 29 H 0.007 0.993 30 H 0.054 0.946 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.057 0.943 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.059 0.941 38 H 0.105 0.895 39 H 0.139 0.861 40 H 0.148 0.852 41 H 0.142 0.858 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.658 -4.098 -6.978 15.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.177 4.177 3 Si 0.752 3.248 4 H -0.187 1.187 5 H -0.210 1.210 6 H -0.167 1.167 7 C -0.567 4.567 8 H 0.050 0.950 9 C 0.103 3.897 10 H 0.063 0.937 11 N -0.301 5.301 12 C -0.061 4.061 13 C 0.044 3.956 14 H 0.088 0.912 15 C -0.189 4.189 16 C -0.153 4.153 17 C -0.191 4.191 18 C -0.023 4.023 19 O -0.326 6.326 20 C -0.049 4.049 21 C -0.140 4.140 22 C -0.142 4.142 23 C -0.160 4.160 24 C -0.139 4.139 25 C -0.172 4.172 26 H 0.076 0.924 27 H 0.152 0.848 28 H 0.097 0.903 29 H 0.025 0.975 30 H 0.073 0.927 31 H 0.104 0.896 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.076 0.924 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.077 0.923 38 H 0.123 0.877 39 H 0.157 0.843 40 H 0.166 0.834 41 H 0.160 0.840 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 14.019 -3.933 -6.764 16.055 hybrid contribution -1.470 1.055 -0.275 1.830 sum 12.549 -2.878 -7.039 14.673 Atomic orbital electron populations 1.70048 1.08167 1.28104 1.51577 1.25931 0.95437 1.02717 0.93650 0.86040 0.79683 0.79213 0.79856 1.18653 1.21044 1.16688 1.21659 0.91551 0.93209 1.50242 0.94983 1.18487 0.91274 0.93188 0.86799 0.93718 1.61090 1.56820 1.10065 1.02094 1.21891 0.98729 0.95452 0.90055 1.22095 0.91537 0.88904 0.93065 0.91218 1.22192 1.02374 0.98781 0.95549 1.21568 0.98977 0.97608 0.97110 1.22181 0.99735 0.98505 0.98661 1.22747 1.01694 0.92836 0.85066 1.87976 1.47495 1.48261 1.48828 1.20225 0.93870 0.94524 0.96288 1.20920 1.00375 0.94137 0.98580 1.21379 0.98306 1.00674 0.93885 1.21332 1.01116 0.93784 0.99736 1.21319 0.99656 0.95574 0.97334 1.21136 1.00839 0.99448 0.95741 0.92448 0.84806 0.90291 0.97479 0.92745 0.89613 0.90060 0.90615 0.92406 0.88592 0.88640 0.92265 0.87701 0.84284 0.83392 0.83977 0.87432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.18 13.96 21.45 0.30 -58.88 16 2 C 0.02 1.28 5.47 84.66 0.46 1.74 16 3 Si 0.93 44.12 27.02 68.60 1.85 45.97 16 4 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 6 H -0.24 -10.67 6.29 99.48 0.63 -10.05 16 7 C -0.53 -30.33 8.65 25.60 0.22 -30.11 16 8 H 0.03 2.08 8.06 -2.91 -0.02 2.05 16 9 C 0.21 10.10 2.16 43.42 0.09 10.19 16 10 H 0.04 2.15 4.13 -2.39 -0.01 2.14 16 11 N -0.67 -29.03 5.80 -499.35 -2.90 -31.92 16 12 C 0.07 2.72 5.18 86.31 0.45 3.17 16 13 C 0.10 3.25 2.88 30.63 0.09 3.34 16 14 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 15 C -0.15 -3.89 5.42 30.68 0.17 -3.73 16 16 C -0.12 -2.26 6.03 30.71 0.19 -2.07 16 17 C -0.15 -3.10 6.14 30.68 0.19 -2.91 16 18 C 0.05 1.30 6.84 72.01 0.49 1.79 16 19 O -0.41 -14.07 9.93 -148.98 -1.48 -15.55 16 20 C -0.05 -2.12 4.93 -19.87 -0.10 -2.21 16 21 C -0.12 -4.90 9.28 22.27 0.21 -4.70 16 22 C -0.12 -4.08 10.05 22.27 0.22 -3.85 16 23 C -0.14 -4.19 10.05 22.27 0.22 -3.96 16 24 C -0.12 -3.88 10.05 22.27 0.22 -3.66 16 25 C -0.15 -6.07 9.67 22.27 0.22 -5.85 16 26 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 27 H 0.34 15.36 7.50 -89.69 -0.67 14.69 16 28 H 0.08 2.90 8.05 -2.39 -0.02 2.88 16 29 H 0.01 0.32 8.04 -2.39 -0.02 0.30 16 30 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 33 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.10 4.31 7.46 -2.91 -0.02 4.29 16 39 H 0.14 3.65 8.06 -2.91 -0.02 3.62 16 40 H 0.15 3.20 8.06 -2.91 -0.02 3.18 16 41 H 0.14 3.56 8.06 -2.91 -0.02 3.54 16 42 H 0.11 4.20 7.61 -2.91 -0.02 4.18 16 Total: -1.00 -68.31 336.60 1.35 -66.96 By element: Atomic # 1 Polarization: 36.01 SS G_CDS: 0.24 Total: 36.25 kcal Atomic # 6 Polarization: -46.17 SS G_CDS: 3.34 Total: -42.83 kcal Atomic # 7 Polarization: -88.21 SS G_CDS: -2.60 Total: -90.80 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: -1.48 Total: -15.55 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 1.85 Total: 45.97 kcal Total: -68.31 1.35 -66.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055018481.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.116 kcal (2) G-P(sol) polarization free energy of solvation -68.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds