Wall clock time and date at job start Mon Mar 30 2020 07:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86801 * 119.99950 * 2 1 4 4 H 1.48503 * 109.47058 * 264.75175 * 3 2 1 5 5 H 1.48496 * 109.46911 * 24.75558 * 3 2 1 6 6 H 1.48496 * 109.46939 * 144.75464 * 3 2 1 7 7 C 1.37872 * 119.99476 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00597 * 354.86611 * 7 2 1 9 9 C 1.50709 * 119.99772 * 174.86976 * 7 2 1 10 10 H 1.09002 * 109.46555 * 0.77549 * 9 7 2 11 11 N 1.46893 * 109.47156 * 240.77285 * 9 7 2 12 12 C 1.46901 * 111.00287 * 84.27983 * 11 9 7 13 13 C 1.52997 * 109.47396 * 179.97438 * 12 11 9 14 14 O 1.42901 * 110.01549 * 63.61176 * 13 12 11 15 15 C 1.54260 * 110.03441 * 302.16821 * 13 12 11 16 16 C 1.54884 * 104.19818 * 217.10203 * 15 13 12 17 17 C 1.54895 * 102.74600 * 37.94374 * 16 15 13 18 18 C 1.53876 * 110.03272 * 184.99737 * 13 12 11 19 19 C 1.50695 * 109.47082 * 120.77194 * 9 7 2 20 20 C 1.38233 * 120.00029 * 73.46743 * 19 9 7 21 21 C 1.38237 * 119.99763 * 179.80570 * 20 19 9 22 22 C 1.38240 * 120.00358 * 0.40285 * 21 20 19 23 23 C 1.38235 * 119.99401 * 359.85617 * 22 21 20 24 24 C 1.38231 * 120.00712 * 359.95331 * 23 22 21 25 25 H 0.97004 * 119.99614 * 359.97438 * 1 2 3 26 26 H 1.00901 * 111.00160 * 320.33136 * 11 9 7 27 27 H 1.09007 * 109.47190 * 300.00359 * 12 11 9 28 28 H 1.09002 * 109.47049 * 59.99883 * 12 11 9 29 29 H 0.96703 * 113.99949 * 300.70209 * 14 13 12 30 30 H 1.08997 * 110.48545 * 335.78546 * 15 13 12 31 31 H 1.09009 * 110.48550 * 98.42533 * 15 13 12 32 32 H 1.08997 * 110.76025 * 279.63031 * 16 15 13 33 33 H 1.09000 * 110.75824 * 156.25731 * 16 15 13 34 34 H 1.09003 * 110.48421 * 203.37616 * 17 16 15 35 35 H 1.09004 * 110.48416 * 80.73711 * 17 16 15 36 36 H 1.09001 * 110.03453 * 238.57161 * 18 13 12 37 37 H 1.08996 * 110.03041 * 0.02562 * 18 13 12 38 38 H 1.08000 * 120.00142 * 359.97438 * 20 19 9 39 39 H 1.08000 * 119.99948 * 180.23087 * 21 20 19 40 40 H 1.07995 * 120.00221 * 179.83212 * 22 21 20 41 41 H 1.08005 * 119.99386 * 179.97438 * 23 22 21 42 42 H 1.08000 * 120.00394 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.6076 1.9824 -1.3942 5 1 1.3956 2.6821 0.5863 6 1 3.4869 1.4747 0.8079 7 6 2.0045 -1.1941 -0.0005 8 1 1.4677 -2.1276 0.0827 9 6 3.5071 -1.1967 -0.1172 10 1 3.8685 -0.1701 -0.1770 11 7 3.9028 -1.9266 -1.3290 12 6 3.8595 -1.0518 -2.5083 13 6 4.2776 -1.8454 -3.7478 14 8 3.3409 -2.8959 -3.9949 15 6 5.6903 -2.4319 -3.5480 16 6 6.3484 -2.3221 -4.9458 17 6 5.8162 -0.9646 -5.4684 18 6 4.3575 -0.9125 -4.9689 19 6 4.1036 -1.8698 1.0919 20 6 4.0209 -3.2427 1.2299 21 6 4.5716 -3.8604 2.3372 22 6 5.1979 -3.1044 3.3105 23 6 5.2759 -1.7310 3.1750 24 6 4.7286 -1.1135 2.0659 25 1 -0.4850 0.8401 0.0004 26 1 3.3261 -2.7436 -1.4636 27 1 2.8460 -0.6737 -2.6433 28 1 4.5433 -0.2151 -2.3654 29 1 3.2531 -3.5243 -3.2652 30 1 6.2470 -1.8454 -2.8171 31 1 5.6299 -3.4745 -3.2356 32 1 6.0237 -3.1385 -5.5908 33 1 7.4349 -2.3042 -4.8609 34 1 5.8476 -0.9364 -6.5576 35 1 6.3932 -0.1411 -5.0477 36 1 3.6825 -1.2615 -5.7503 37 1 4.0989 0.1057 -4.6783 38 1 3.5283 -3.8330 0.4714 39 1 4.5103 -4.9335 2.4432 40 1 5.6258 -3.5868 4.1768 41 1 5.7648 -1.1403 3.9356 42 1 4.7899 -0.0405 1.9599 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087028838.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:00 Heat of formation + Delta-G solvation = -41.437723 kcal Electronic energy + Delta-G solvation = -21826.921791 eV Core-core repulsion = 18770.651148 eV Total energy + Delta-G solvation = -3056.270643 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.17203 -38.48219 -35.40387 -34.48261 -32.30546 -30.87898 -30.20448 -28.69612 -28.14088 -26.32274 -23.57854 -22.45382 -21.67170 -20.70208 -19.79390 -19.44971 -17.36586 -16.50629 -15.99463 -15.46812 -15.30574 -14.83916 -14.38247 -14.17638 -13.72403 -13.44128 -13.14210 -12.79202 -12.75793 -12.65963 -12.24659 -12.08955 -11.84214 -11.45775 -11.41979 -11.08715 -11.01520 -10.97302 -10.88091 -10.54680 -10.43234 -10.35936 -10.11663 -9.90090 -9.46649 -9.39283 -8.76995 -8.23867 -7.97709 -7.39803 -6.28697 -4.31137 2.09285 2.15770 3.12892 3.20692 3.22880 4.21479 4.49548 4.50181 4.76213 4.82569 5.06283 5.12790 5.20430 5.50446 5.51712 5.54438 5.66969 5.68673 5.73373 5.79985 5.85499 5.97048 6.02210 6.06073 6.15974 6.18348 6.23961 6.34337 6.36793 6.41701 6.51559 6.59794 6.64851 6.72682 6.81844 7.12694 7.20849 7.33471 7.50328 7.74257 7.87390 8.05224 8.16514 8.40860 8.76112 9.32888 10.83693 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.013196 B = 0.007123 C = 0.005418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.346755 B = 3930.249132 C = 5166.484387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.080 3.920 3 Si 0.870 3.130 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.536 4.536 8 H 0.078 0.922 9 C 0.206 3.794 10 H 0.050 0.950 11 N -0.682 5.682 12 C 0.040 3.960 13 C 0.133 3.867 14 O -0.561 6.561 15 C -0.131 4.131 16 C -0.126 4.126 17 C -0.122 4.122 18 C -0.114 4.114 19 C -0.015 4.015 20 C -0.104 4.104 21 C -0.125 4.125 22 C -0.151 4.151 23 C -0.123 4.123 24 C -0.133 4.133 25 H 0.267 0.733 26 H 0.328 0.672 27 H 0.046 0.954 28 H 0.064 0.936 29 H 0.375 0.625 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.114 0.886 39 H 0.109 0.891 40 H 0.108 0.892 41 H 0.109 0.891 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.667 -3.331 -4.126 12.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.124 4.124 3 Si 0.698 3.302 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.574 4.574 8 H 0.096 0.904 9 C 0.098 3.902 10 H 0.068 0.932 11 N -0.312 5.312 12 C -0.090 4.090 13 C 0.092 3.908 14 O -0.368 6.368 15 C -0.169 4.169 16 C -0.163 4.163 17 C -0.160 4.160 18 C -0.152 4.152 19 C -0.016 4.016 20 C -0.122 4.122 21 C -0.143 4.143 22 C -0.169 4.169 23 C -0.141 4.141 24 C -0.152 4.152 25 H 0.077 0.923 26 H 0.146 0.854 27 H 0.064 0.936 28 H 0.082 0.918 29 H 0.223 0.777 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.132 0.868 39 H 0.127 0.873 40 H 0.126 0.874 41 H 0.127 0.873 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 12.095 -2.786 -4.596 13.235 hybrid contribution -0.728 0.840 0.651 1.288 sum 11.367 -1.945 -3.945 12.188 Atomic orbital electron populations 1.69898 1.06300 1.27319 1.48629 1.25105 0.94740 0.98951 0.93645 0.86985 0.80326 0.83906 0.79031 1.19826 1.21167 1.18815 1.21486 0.89059 0.95070 1.51827 0.90406 1.18617 0.94044 0.92851 0.84680 0.93174 1.61134 1.58298 1.09372 1.02429 1.22496 1.00519 0.95851 0.90151 1.21900 0.87955 0.87240 0.93716 1.86490 1.63816 1.40831 1.45619 1.22856 0.96012 1.01570 0.96421 1.22505 0.99379 0.97192 0.97231 1.22343 0.95754 0.97830 1.00059 1.22124 0.97055 0.98916 0.97109 1.20253 0.91563 0.93437 0.96353 1.20814 0.99508 0.94588 0.97325 1.21020 0.99383 0.98959 0.94970 1.20844 1.02609 0.94098 0.99326 1.20934 1.00718 0.94709 0.97731 1.20995 0.99740 0.99440 0.95013 0.92324 0.85422 0.93625 0.91750 0.77729 0.90424 0.91318 0.91712 0.92052 0.91887 0.91707 0.90686 0.91026 0.86784 0.87260 0.87423 0.87315 0.87195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.98 13.96 55.43 0.77 -25.21 16 2 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 3 Si 0.87 20.62 27.02 -169.99 -4.59 16.03 16 4 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.26 -5.95 6.34 56.52 0.36 -5.60 16 7 C -0.54 -14.01 8.55 -34.44 -0.29 -14.30 16 8 H 0.08 2.24 8.06 -52.49 -0.42 1.81 16 9 C 0.21 4.54 2.15 -70.02 -0.15 4.39 16 10 H 0.05 1.16 4.15 -51.93 -0.22 0.94 16 11 N -0.68 -12.90 5.41 -109.19 -0.59 -13.49 16 12 C 0.04 0.74 4.30 -3.82 -0.02 0.72 16 13 C 0.13 2.06 1.12 -89.51 -0.10 1.96 16 14 O -0.56 -9.17 12.89 -35.23 -0.45 -9.62 16 15 C -0.13 -1.80 5.67 -25.08 -0.14 -1.94 16 16 C -0.13 -1.49 6.91 -24.74 -0.17 -1.66 16 17 C -0.12 -1.44 6.83 -25.07 -0.17 -1.62 16 18 C -0.11 -1.62 6.27 -25.61 -0.16 -1.78 16 19 C -0.01 -0.31 4.93 -104.62 -0.52 -0.83 16 20 C -0.10 -1.97 9.26 -39.58 -0.37 -2.33 16 21 C -0.13 -2.09 10.05 -39.58 -0.40 -2.49 16 22 C -0.15 -2.43 10.05 -39.58 -0.40 -2.82 16 23 C -0.12 -2.10 10.05 -39.59 -0.40 -2.49 16 24 C -0.13 -2.63 9.67 -39.58 -0.38 -3.01 16 25 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 26 H 0.33 6.08 6.47 -39.29 -0.25 5.82 16 27 H 0.05 0.99 7.97 -51.92 -0.41 0.58 16 28 H 0.06 1.18 8.06 -51.93 -0.42 0.76 16 29 H 0.37 5.32 7.61 45.56 0.35 5.66 16 30 H 0.08 1.13 7.85 -51.93 -0.41 0.72 16 31 H 0.07 0.93 8.06 -51.92 -0.42 0.51 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.07 1.09 7.95 -51.93 -0.41 0.68 16 37 H 0.07 1.02 7.67 -51.93 -0.40 0.62 16 38 H 0.11 2.06 7.46 -52.49 -0.39 1.67 16 39 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 40 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 41 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 42 H 0.11 2.14 7.64 -52.49 -0.40 1.74 16 LS Contribution 335.10 15.07 5.05 5.05 Total: -1.00 -28.81 335.10 -9.52 -38.33 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: -5.95 Total: 15.02 kcal Atomic # 6 Polarization: -22.34 SS G_CDS: -3.76 Total: -26.11 kcal Atomic # 7 Polarization: -38.89 SS G_CDS: 0.18 Total: -38.70 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: -0.45 Total: -9.62 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.59 Total: 16.03 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -28.81 -9.52 -38.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087028838.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.107 kcal (2) G-P(sol) polarization free energy of solvation -28.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds