Wall clock time and date at job start Mon Mar 30 2020 07:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86801 * 119.99950 * 2 1 4 4 H 1.48503 * 109.47058 * 264.75175 * 3 2 1 5 5 H 1.48496 * 109.46911 * 24.75558 * 3 2 1 6 6 H 1.48496 * 109.46939 * 144.75464 * 3 2 1 7 7 C 1.37872 * 119.99476 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00597 * 354.86611 * 7 2 1 9 9 C 1.50709 * 119.99772 * 174.86976 * 7 2 1 10 10 H 1.09002 * 109.46555 * 0.77549 * 9 7 2 11 11 N 1.46893 * 109.47156 * 240.77285 * 9 7 2 12 12 C 1.46901 * 111.00287 * 84.27983 * 11 9 7 13 13 C 1.52997 * 109.47396 * 179.97438 * 12 11 9 14 14 O 1.42901 * 110.01549 * 63.61176 * 13 12 11 15 15 C 1.54260 * 110.03441 * 302.16821 * 13 12 11 16 16 C 1.54884 * 104.19818 * 217.10203 * 15 13 12 17 17 C 1.54895 * 102.74600 * 37.94374 * 16 15 13 18 18 C 1.53876 * 110.03272 * 184.99737 * 13 12 11 19 19 C 1.50695 * 109.47082 * 120.77194 * 9 7 2 20 20 C 1.38233 * 120.00029 * 73.46743 * 19 9 7 21 21 C 1.38237 * 119.99763 * 179.80570 * 20 19 9 22 22 C 1.38240 * 120.00358 * 0.40285 * 21 20 19 23 23 C 1.38235 * 119.99401 * 359.85617 * 22 21 20 24 24 C 1.38231 * 120.00712 * 359.95331 * 23 22 21 25 25 H 0.97004 * 119.99614 * 359.97438 * 1 2 3 26 26 H 1.00901 * 111.00160 * 320.33136 * 11 9 7 27 27 H 1.09007 * 109.47190 * 300.00359 * 12 11 9 28 28 H 1.09002 * 109.47049 * 59.99883 * 12 11 9 29 29 H 0.96703 * 113.99949 * 300.70209 * 14 13 12 30 30 H 1.08997 * 110.48545 * 335.78546 * 15 13 12 31 31 H 1.09009 * 110.48550 * 98.42533 * 15 13 12 32 32 H 1.08997 * 110.76025 * 279.63031 * 16 15 13 33 33 H 1.09000 * 110.75824 * 156.25731 * 16 15 13 34 34 H 1.09003 * 110.48421 * 203.37616 * 17 16 15 35 35 H 1.09004 * 110.48416 * 80.73711 * 17 16 15 36 36 H 1.09001 * 110.03453 * 238.57161 * 18 13 12 37 37 H 1.08996 * 110.03041 * 0.02562 * 18 13 12 38 38 H 1.08000 * 120.00142 * 359.97438 * 20 19 9 39 39 H 1.08000 * 119.99948 * 180.23087 * 21 20 19 40 40 H 1.07995 * 120.00221 * 179.83212 * 22 21 20 41 41 H 1.08005 * 119.99386 * 179.97438 * 23 22 21 42 42 H 1.08000 * 120.00394 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.6076 1.9824 -1.3942 5 1 1.3956 2.6821 0.5863 6 1 3.4869 1.4747 0.8079 7 6 2.0045 -1.1941 -0.0005 8 1 1.4677 -2.1276 0.0827 9 6 3.5071 -1.1967 -0.1172 10 1 3.8685 -0.1701 -0.1770 11 7 3.9028 -1.9266 -1.3290 12 6 3.8595 -1.0518 -2.5083 13 6 4.2776 -1.8454 -3.7478 14 8 3.3409 -2.8959 -3.9949 15 6 5.6903 -2.4319 -3.5480 16 6 6.3484 -2.3221 -4.9458 17 6 5.8162 -0.9646 -5.4684 18 6 4.3575 -0.9125 -4.9689 19 6 4.1036 -1.8698 1.0919 20 6 4.0209 -3.2427 1.2299 21 6 4.5716 -3.8604 2.3372 22 6 5.1979 -3.1044 3.3105 23 6 5.2759 -1.7310 3.1750 24 6 4.7286 -1.1135 2.0659 25 1 -0.4850 0.8401 0.0004 26 1 3.3261 -2.7436 -1.4636 27 1 2.8460 -0.6737 -2.6433 28 1 4.5433 -0.2151 -2.3654 29 1 3.2531 -3.5243 -3.2652 30 1 6.2470 -1.8454 -2.8171 31 1 5.6299 -3.4745 -3.2356 32 1 6.0237 -3.1385 -5.5908 33 1 7.4349 -2.3042 -4.8609 34 1 5.8476 -0.9364 -6.5576 35 1 6.3932 -0.1411 -5.0477 36 1 3.6825 -1.2615 -5.7503 37 1 4.0989 0.1057 -4.6783 38 1 3.5283 -3.8330 0.4714 39 1 4.5103 -4.9335 2.4432 40 1 5.6258 -3.5868 4.1768 41 1 5.7648 -1.1403 3.9356 42 1 4.7899 -0.0405 1.9599 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087028838.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:00 Heat of formation + Delta-G solvation = -60.111202 kcal Electronic energy + Delta-G solvation = -21827.731534 eV Core-core repulsion = 18770.651148 eV Total energy + Delta-G solvation = -3057.080386 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.49964 -39.84573 -36.95952 -35.73622 -34.31133 -32.36367 -31.58910 -29.85052 -29.48023 -28.01711 -25.13795 -23.97881 -23.06935 -21.76873 -21.34537 -20.69997 -19.33586 -17.95052 -17.27416 -16.96730 -16.57994 -16.38222 -15.87212 -15.59408 -15.22857 -14.91828 -14.60982 -14.35854 -14.09689 -14.06135 -13.73596 -13.52153 -13.41937 -13.00216 -12.92323 -12.70600 -12.37171 -12.10206 -11.99735 -11.90899 -11.85209 -11.79709 -11.44516 -11.37030 -11.30076 -10.87024 -10.66346 -9.63299 -9.46526 -9.06243 -8.41257 -6.45838 0.68863 0.74763 1.21890 1.24419 1.32586 2.20908 2.90085 3.16799 3.30689 3.42776 3.73461 3.87347 3.99453 4.14160 4.28602 4.30238 4.39674 4.46411 4.51884 4.57788 4.61282 4.65382 4.79601 4.85173 4.91585 4.95201 4.96012 5.05911 5.12516 5.20862 5.26382 5.30337 5.37960 5.40768 5.43641 5.51682 5.75957 5.79743 5.96419 5.99965 6.29266 6.37232 6.59916 6.66402 6.83951 7.21618 8.74915 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.013196 B = 0.007123 C = 0.005418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.346755 B = 3930.249132 C = 5166.484387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.024 3.976 3 Si 0.925 3.075 4 H -0.265 1.265 5 H -0.286 1.286 6 H -0.245 1.245 7 C -0.528 4.528 8 H 0.038 0.962 9 C 0.214 3.786 10 H 0.042 0.958 11 N -0.663 5.663 12 C 0.043 3.957 13 C 0.133 3.867 14 O -0.573 6.573 15 C -0.126 4.126 16 C -0.119 4.119 17 C -0.116 4.116 18 C -0.119 4.119 19 C -0.047 4.047 20 C -0.119 4.119 21 C -0.124 4.124 22 C -0.142 4.142 23 C -0.122 4.122 24 C -0.154 4.154 25 H 0.266 0.734 26 H 0.330 0.670 27 H 0.006 0.994 28 H 0.067 0.933 29 H 0.381 0.619 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.111 0.889 39 H 0.140 0.860 40 H 0.147 0.853 41 H 0.140 0.860 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.796 -3.861 -3.588 15.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.175 4.175 3 Si 0.749 3.251 4 H -0.190 1.190 5 H -0.212 1.212 6 H -0.169 1.169 7 C -0.567 4.567 8 H 0.057 0.943 9 C 0.105 3.895 10 H 0.060 0.940 11 N -0.293 5.293 12 C -0.087 4.087 13 C 0.093 3.907 14 O -0.381 6.381 15 C -0.163 4.163 16 C -0.157 4.157 17 C -0.154 4.154 18 C -0.157 4.157 19 C -0.048 4.048 20 C -0.138 4.138 21 C -0.142 4.142 22 C -0.160 4.160 23 C -0.140 4.140 24 C -0.173 4.173 25 H 0.075 0.925 26 H 0.147 0.853 27 H 0.024 0.976 28 H 0.085 0.915 29 H 0.230 0.770 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.129 0.871 39 H 0.158 0.842 40 H 0.164 0.836 41 H 0.158 0.842 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 15.253 -3.334 -4.061 16.133 hybrid contribution -1.698 0.861 0.544 1.980 sum 13.555 -2.473 -3.516 14.221 Atomic orbital electron populations 1.70042 1.08066 1.28061 1.51465 1.25881 0.95366 1.02548 0.93752 0.86093 0.79682 0.79665 0.79655 1.18975 1.21203 1.16884 1.21685 0.91489 0.93303 1.50230 0.94343 1.18449 0.91233 0.93159 0.86664 0.94025 1.61111 1.57378 1.08976 1.01806 1.22546 0.98301 0.96425 0.91423 1.21979 0.88891 0.87078 0.92801 1.86479 1.64372 1.41122 1.46111 1.22777 0.94483 1.01270 0.97806 1.22491 1.00405 0.97219 0.95568 1.22347 0.93633 0.98167 1.01225 1.22195 0.99090 0.98134 0.96307 1.20192 0.93850 0.94536 0.96231 1.20928 1.00238 0.94019 0.98598 1.21392 0.98135 1.00703 0.93954 1.21328 1.00998 0.93758 0.99914 1.21299 0.99773 0.95656 0.97246 1.21132 1.00805 0.99363 0.96001 0.92472 0.85292 0.97608 0.91504 0.76995 0.91042 0.91138 0.91488 0.90048 0.90064 0.90805 0.91219 0.91607 0.87092 0.84207 0.83573 0.84248 0.87718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.70 13.96 21.45 0.30 -57.40 16 2 C 0.02 1.38 5.47 84.65 0.46 1.84 16 3 Si 0.92 43.52 27.02 68.60 1.85 45.38 16 4 H -0.26 -11.99 7.11 99.48 0.71 -11.29 16 5 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 6 H -0.24 -10.70 6.34 99.48 0.63 -10.07 16 7 C -0.53 -28.90 8.55 25.60 0.22 -28.68 16 8 H 0.04 2.35 8.06 -2.91 -0.02 2.33 16 9 C 0.21 9.63 2.15 43.43 0.09 9.72 16 10 H 0.04 1.94 4.15 -2.39 -0.01 1.93 16 11 N -0.66 -25.65 5.41 -499.35 -2.70 -28.35 16 12 C 0.04 1.64 4.30 86.30 0.37 2.01 16 13 C 0.13 4.12 1.12 -10.07 -0.01 4.11 16 14 O -0.57 -18.90 12.89 -148.98 -1.92 -20.82 16 15 C -0.13 -3.27 5.67 31.67 0.18 -3.09 16 16 C -0.12 -2.52 6.91 31.89 0.22 -2.30 16 17 C -0.12 -2.46 6.83 31.67 0.22 -2.25 16 18 C -0.12 -3.31 6.27 31.32 0.20 -3.12 16 19 C -0.05 -1.96 4.93 -19.86 -0.10 -2.05 16 20 C -0.12 -4.44 9.26 22.27 0.21 -4.24 16 21 C -0.12 -3.79 10.05 22.27 0.22 -3.57 16 22 C -0.14 -4.00 10.05 22.27 0.22 -3.78 16 23 C -0.12 -3.78 10.05 22.27 0.22 -3.55 16 24 C -0.15 -5.90 9.67 22.27 0.22 -5.69 16 25 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 26 H 0.33 12.68 6.47 -89.69 -0.58 12.09 16 27 H 0.01 0.26 7.97 -2.38 -0.02 0.24 16 28 H 0.07 2.47 8.06 -2.39 -0.02 2.45 16 29 H 0.38 11.04 7.61 -74.06 -0.56 10.48 16 30 H 0.07 1.96 7.85 -2.39 -0.02 1.94 16 31 H 0.07 1.80 8.06 -2.38 -0.02 1.78 16 32 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.07 1.99 7.95 -2.39 -0.02 1.98 16 37 H 0.07 1.87 7.67 -2.39 -0.02 1.85 16 38 H 0.11 4.06 7.46 -2.91 -0.02 4.03 16 39 H 0.14 3.37 8.06 -2.91 -0.02 3.35 16 40 H 0.15 3.03 8.06 -2.91 -0.02 3.00 16 41 H 0.14 3.41 8.06 -2.91 -0.02 3.39 16 42 H 0.10 4.00 7.64 -2.91 -0.02 3.97 16 Total: -1.00 -64.96 335.10 0.27 -64.70 By element: Atomic # 1 Polarization: 41.34 SS G_CDS: -0.21 Total: 41.13 kcal Atomic # 6 Polarization: -47.57 SS G_CDS: 2.94 Total: -44.63 kcal Atomic # 7 Polarization: -83.35 SS G_CDS: -2.40 Total: -85.75 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: -1.92 Total: -20.82 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 1.85 Total: 45.38 kcal Total: -64.96 0.27 -64.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087028838.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.588 kcal (2) G-P(sol) polarization free energy of solvation -64.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds