Wall clock time and date at job start Mon Mar 30 2020 07:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00034 * 2 1 4 4 H 1.48496 * 109.47256 * 269.99731 * 3 2 1 5 5 H 1.48500 * 109.47370 * 29.99595 * 3 2 1 6 6 H 1.48502 * 109.47278 * 149.99629 * 3 2 1 7 7 C 1.37882 * 119.99940 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99659 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99976 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46839 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.47114 * 55.00310 * 10 9 7 12 12 N 1.46895 * 109.47379 * 295.00116 * 10 9 7 13 13 C 1.46900 * 111.00027 * 155.00153 * 12 10 9 14 14 H 1.09001 * 109.57506 * 324.84172 * 13 12 10 15 15 C 1.53176 * 109.52365 * 204.68469 * 13 12 10 16 16 C 1.53183 * 109.03838 * 183.11145 * 15 13 12 17 17 C 1.53094 * 109.15859 * 56.98139 * 16 15 13 18 18 O 1.42902 * 109.42545 * 302.39685 * 17 16 15 19 19 C 1.42904 * 114.09961 * 61.14161 * 18 17 16 20 20 C 1.50703 * 109.46582 * 175.00026 * 10 9 7 21 21 C 1.38231 * 120.00134 * 79.73114 * 20 10 9 22 22 C 1.38235 * 120.00083 * 179.75765 * 21 20 10 23 23 C 1.38237 * 119.99845 * 0.49341 * 22 21 20 24 24 C 1.38227 * 119.99984 * 359.78149 * 23 22 21 25 25 C 1.38233 * 120.00236 * 359.96144 * 24 23 22 26 26 H 0.96997 * 119.99728 * 0.02562 * 1 2 3 27 27 H 1.09007 * 109.47005 * 59.99886 * 9 7 2 28 28 H 1.08995 * 109.47305 * 300.00035 * 9 7 2 29 29 H 1.00906 * 110.99985 * 278.95135 * 12 10 9 30 30 H 1.09002 * 109.54544 * 302.98189 * 15 13 12 31 31 H 1.09003 * 109.54279 * 63.24361 * 15 13 12 32 32 H 1.08997 * 109.51813 * 176.88468 * 16 15 13 33 33 H 1.08998 * 109.52255 * 297.01444 * 16 15 13 34 34 H 1.09000 * 109.47974 * 62.37640 * 17 16 15 35 35 H 1.09001 * 109.47684 * 182.39743 * 17 16 15 36 36 H 1.09002 * 109.48241 * 178.87096 * 19 18 17 37 37 H 1.08999 * 109.47648 * 58.84690 * 19 18 17 38 38 H 1.08006 * 120.00059 * 359.97438 * 21 20 10 39 39 H 1.08006 * 119.99952 * 180.24802 * 22 21 20 40 40 H 1.07999 * 119.99671 * 179.76579 * 23 22 21 41 41 H 1.07998 * 120.00116 * 179.97438 * 24 23 22 42 42 H 1.08004 * 120.00612 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 1 2.9294 -3.5552 0.8424 12 7 3.0085 -3.6539 -1.2546 13 6 4.3096 -4.3141 -1.0840 14 1 4.6942 -4.1105 -0.0846 15 6 5.2946 -3.7823 -2.1296 16 6 6.6228 -4.5330 -1.9922 17 6 6.3690 -6.0351 -2.1441 18 8 5.4213 -6.4587 -1.1619 19 6 4.1452 -5.8247 -1.2708 20 6 1.4959 -4.9636 0.1244 21 6 0.8895 -5.5204 -0.9861 22 6 0.2063 -6.7168 -0.8735 23 6 0.1208 -7.3513 0.3516 24 6 0.7223 -6.7917 1.4632 25 6 1.4101 -5.5980 1.3496 26 1 -0.4849 0.8400 -0.0004 27 1 0.6247 -2.5571 -0.8897 28 1 0.6241 -2.5567 0.8902 29 1 2.4812 -4.0815 -2.0012 30 1 4.8874 -3.9413 -3.1282 31 1 5.4592 -2.7172 -1.9670 32 1 7.3115 -4.1996 -2.7685 33 1 7.0546 -4.3329 -1.0116 34 1 5.9756 -6.2384 -3.1401 35 1 7.3041 -6.5776 -2.0049 36 1 3.4783 -6.2156 -0.5024 37 1 3.7226 -6.0253 -2.2553 38 1 0.9525 -5.0224 -1.9424 39 1 -0.2641 -7.1539 -1.7420 40 1 -0.4162 -8.2841 0.4403 41 1 0.6552 -7.2871 2.4205 42 1 1.8804 -5.1609 2.2181 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181575918.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:14 Heat of formation + Delta-G solvation = -30.595524 kcal Electronic energy + Delta-G solvation = -21855.608275 eV Core-core repulsion = 18799.807785 eV Total energy + Delta-G solvation = -3055.800490 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.79059 -38.74403 -36.00940 -33.45605 -32.52910 -31.25954 -30.60302 -29.18927 -27.58430 -24.80059 -24.49523 -22.76924 -22.13944 -21.83796 -20.20697 -19.50040 -17.07241 -16.22586 -16.03108 -15.90111 -15.15038 -14.92435 -14.66407 -14.47239 -14.18939 -13.83472 -13.59114 -13.06195 -12.84081 -12.59770 -12.44352 -12.35552 -12.06384 -11.58290 -11.22611 -11.08907 -10.97412 -10.93529 -10.72573 -10.57543 -10.43149 -10.30264 -10.14341 -9.72074 -9.47337 -9.01052 -8.63983 -8.27522 -8.20473 -7.71560 -5.89200 -3.87545 1.67665 1.68827 3.38822 3.44751 3.48176 3.91840 4.09998 4.55474 4.65657 4.95091 4.97616 5.07453 5.15432 5.16112 5.21116 5.27863 5.32677 5.43519 5.47950 5.52910 5.69457 5.78944 5.80592 5.82924 5.90147 5.94098 6.11308 6.14957 6.29143 6.34956 6.43106 6.47498 6.74270 6.75874 6.80189 6.95478 7.19239 7.30454 7.52318 7.64490 7.94325 7.98980 8.11884 8.54784 9.17401 9.73762 11.22623 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.012193 B = 0.006977 C = 0.004747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.915585 B = 4011.946380 C = 5897.524955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.051 3.949 3 Si 0.891 3.109 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.490 4.490 8 H 0.060 0.940 9 C 0.042 3.958 10 C 0.128 3.872 11 H 0.076 0.924 12 N -0.648 5.648 13 C 0.056 3.944 14 H 0.082 0.918 15 C -0.110 4.110 16 C -0.155 4.155 17 C 0.059 3.941 18 O -0.385 6.385 19 C 0.033 3.967 20 C -0.091 4.091 21 C -0.122 4.122 22 C -0.118 4.118 23 C -0.136 4.136 24 C -0.119 4.119 25 C -0.117 4.117 26 H 0.257 0.743 27 H 0.019 0.981 28 H 0.020 0.980 29 H 0.333 0.667 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.046 0.954 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.044 0.956 38 H 0.119 0.881 39 H 0.116 0.884 40 H 0.114 0.886 41 H 0.116 0.884 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.261 -14.177 -2.980 16.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.148 4.148 3 Si 0.719 3.281 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.201 1.201 7 C -0.528 4.528 8 H 0.078 0.922 9 C 0.005 3.995 10 C 0.018 3.982 11 H 0.094 0.906 12 N -0.278 5.278 13 C -0.055 4.055 14 H 0.101 0.899 15 C -0.148 4.148 16 C -0.193 4.193 17 C -0.017 4.017 18 O -0.303 6.303 19 C -0.045 4.045 20 C -0.093 4.093 21 C -0.140 4.140 22 C -0.137 4.137 23 C -0.154 4.154 24 C -0.137 4.137 25 C -0.136 4.136 26 H 0.067 0.933 27 H 0.037 0.963 28 H 0.038 0.962 29 H 0.153 0.847 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.064 0.936 35 H 0.106 0.894 36 H 0.112 0.888 37 H 0.063 0.937 38 H 0.137 0.863 39 H 0.134 0.866 40 H 0.132 0.868 41 H 0.134 0.866 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 7.423 -13.541 -2.747 15.684 hybrid contribution -0.082 0.229 -0.213 0.323 sum 7.340 -13.312 -2.960 15.487 Atomic orbital electron populations 1.69970 1.05972 1.26268 1.52063 1.24996 0.94766 0.99041 0.96033 0.86619 0.79743 0.83803 0.77905 1.20906 1.21611 1.20074 1.21105 0.93171 0.90087 1.48475 0.92225 1.19093 0.92727 0.90400 0.97303 1.21074 0.95036 0.90903 0.91150 0.90601 1.60735 1.03344 1.56723 1.07042 1.22281 0.92149 0.90907 1.00130 0.89935 1.21572 0.93526 1.00877 0.98852 1.22214 0.98466 0.95888 1.02772 1.22558 0.92773 0.94683 0.91725 1.87910 1.22621 1.65280 1.54464 1.23625 0.85118 0.94440 1.01356 1.21179 0.97610 0.97222 0.93288 1.20959 0.98468 0.95793 0.98771 1.21051 0.99423 0.95747 0.97432 1.21011 1.01046 1.00175 0.93184 1.21087 0.98172 0.96189 0.98279 1.21091 0.99844 0.95264 0.97362 0.93292 0.96287 0.96231 0.84693 0.92117 0.90399 0.91087 0.91146 0.93575 0.89392 0.88839 0.93723 0.86273 0.86615 0.86772 0.86611 0.86215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.15 13.29 55.43 0.74 -26.41 16 2 C 0.05 1.46 5.46 -17.82 -0.10 1.37 16 3 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 4 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.49 -13.54 8.84 -34.44 -0.30 -13.84 16 8 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 9 C 0.04 1.05 4.63 -27.88 -0.13 0.92 16 10 C 0.13 2.50 2.17 -68.86 -0.15 2.35 16 11 H 0.08 1.53 7.30 -51.93 -0.38 1.15 16 12 N -0.65 -11.58 5.76 -100.81 -0.58 -12.16 16 13 C 0.06 0.87 2.67 -67.57 -0.18 0.69 16 14 H 0.08 1.38 7.44 -51.93 -0.39 1.00 16 15 C -0.11 -1.53 5.64 -26.55 -0.15 -1.68 16 16 C -0.16 -1.78 6.14 -26.59 -0.16 -1.95 16 17 C 0.06 0.68 6.84 37.21 0.25 0.94 16 18 O -0.39 -5.60 10.77 -35.23 -0.38 -5.98 16 19 C 0.03 0.48 5.48 37.21 0.20 0.68 16 20 C -0.09 -1.56 2.94 -104.62 -0.31 -1.87 16 21 C -0.12 -1.91 8.49 -39.59 -0.34 -2.25 16 22 C -0.12 -1.65 10.05 -39.58 -0.40 -2.04 16 23 C -0.14 -1.81 10.05 -39.59 -0.40 -2.21 16 24 C -0.12 -1.66 10.05 -39.59 -0.40 -2.06 16 25 C -0.12 -1.86 9.66 -39.58 -0.38 -2.25 16 26 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 27 H 0.02 0.51 8.14 -51.92 -0.42 0.09 16 28 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.33 5.57 6.08 -39.29 -0.24 5.33 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.09 1.44 6.14 -51.93 -0.32 1.12 16 37 H 0.04 0.61 8.09 -51.93 -0.42 0.19 16 38 H 0.12 1.81 6.53 -52.48 -0.34 1.47 16 39 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 40 H 0.11 1.23 8.06 -52.49 -0.42 0.80 16 41 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 42 H 0.12 1.81 8.04 -52.48 -0.42 1.39 16 LS Contribution 334.73 15.07 5.04 5.04 Total: -1.00 -30.38 334.73 -9.83 -40.21 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -6.70 Total: 5.55 kcal Atomic # 6 Polarization: -20.25 SS G_CDS: -2.93 Total: -23.19 kcal Atomic # 7 Polarization: -38.73 SS G_CDS: 0.16 Total: -38.57 kcal Atomic # 8 Polarization: -5.60 SS G_CDS: -0.38 Total: -5.98 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.38 -9.83 -40.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181575918.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.616 kcal (2) G-P(sol) polarization free energy of solvation -30.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds