Wall clock time and date at job start Mon Mar 30 2020 07:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00034 * 2 1 4 4 H 1.48496 * 109.47256 * 269.99731 * 3 2 1 5 5 H 1.48500 * 109.47370 * 29.99595 * 3 2 1 6 6 H 1.48502 * 109.47278 * 149.99629 * 3 2 1 7 7 C 1.37882 * 119.99940 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99659 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99976 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.46839 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.47114 * 55.00310 * 10 9 7 12 12 N 1.46895 * 109.47379 * 295.00116 * 10 9 7 13 13 C 1.46900 * 111.00027 * 155.00153 * 12 10 9 14 14 H 1.09001 * 109.57506 * 324.84172 * 13 12 10 15 15 C 1.53176 * 109.52365 * 204.68469 * 13 12 10 16 16 C 1.53183 * 109.03838 * 183.11145 * 15 13 12 17 17 C 1.53094 * 109.15859 * 56.98139 * 16 15 13 18 18 O 1.42902 * 109.42545 * 302.39685 * 17 16 15 19 19 C 1.42904 * 114.09961 * 61.14161 * 18 17 16 20 20 C 1.50703 * 109.46582 * 175.00026 * 10 9 7 21 21 C 1.38231 * 120.00134 * 79.73114 * 20 10 9 22 22 C 1.38235 * 120.00083 * 179.75765 * 21 20 10 23 23 C 1.38237 * 119.99845 * 0.49341 * 22 21 20 24 24 C 1.38227 * 119.99984 * 359.78149 * 23 22 21 25 25 C 1.38233 * 120.00236 * 359.96144 * 24 23 22 26 26 H 0.96997 * 119.99728 * 0.02562 * 1 2 3 27 27 H 1.09007 * 109.47005 * 59.99886 * 9 7 2 28 28 H 1.08995 * 109.47305 * 300.00035 * 9 7 2 29 29 H 1.00906 * 110.99985 * 278.95135 * 12 10 9 30 30 H 1.09002 * 109.54544 * 302.98189 * 15 13 12 31 31 H 1.09003 * 109.54279 * 63.24361 * 15 13 12 32 32 H 1.08997 * 109.51813 * 176.88468 * 16 15 13 33 33 H 1.08998 * 109.52255 * 297.01444 * 16 15 13 34 34 H 1.09000 * 109.47974 * 62.37640 * 17 16 15 35 35 H 1.09001 * 109.47684 * 182.39743 * 17 16 15 36 36 H 1.09002 * 109.48241 * 178.87096 * 19 18 17 37 37 H 1.08999 * 109.47648 * 58.84690 * 19 18 17 38 38 H 1.08006 * 120.00059 * 359.97438 * 21 20 10 39 39 H 1.08006 * 119.99952 * 180.24802 * 22 21 20 40 40 H 1.07999 * 119.99671 * 179.76579 * 23 22 21 41 41 H 1.07998 * 120.00116 * 179.97438 * 24 23 22 42 42 H 1.08004 * 120.00612 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 1 2.9294 -3.5552 0.8424 12 7 3.0085 -3.6539 -1.2546 13 6 4.3096 -4.3141 -1.0840 14 1 4.6942 -4.1105 -0.0846 15 6 5.2946 -3.7823 -2.1296 16 6 6.6228 -4.5330 -1.9922 17 6 6.3690 -6.0351 -2.1441 18 8 5.4213 -6.4587 -1.1619 19 6 4.1452 -5.8247 -1.2708 20 6 1.4959 -4.9636 0.1244 21 6 0.8895 -5.5204 -0.9861 22 6 0.2063 -6.7168 -0.8735 23 6 0.1208 -7.3513 0.3516 24 6 0.7223 -6.7917 1.4632 25 6 1.4101 -5.5980 1.3496 26 1 -0.4849 0.8400 -0.0004 27 1 0.6247 -2.5571 -0.8897 28 1 0.6241 -2.5567 0.8902 29 1 2.4812 -4.0815 -2.0012 30 1 4.8874 -3.9413 -3.1282 31 1 5.4592 -2.7172 -1.9670 32 1 7.3115 -4.1996 -2.7685 33 1 7.0546 -4.3329 -1.0116 34 1 5.9756 -6.2384 -3.1401 35 1 7.3041 -6.5776 -2.0049 36 1 3.4783 -6.2156 -0.5024 37 1 3.7226 -6.0253 -2.2553 38 1 0.9525 -5.0224 -1.9424 39 1 -0.2641 -7.1539 -1.7420 40 1 -0.4162 -8.2841 0.4403 41 1 0.6552 -7.2871 2.4205 42 1 1.8804 -5.1609 2.2181 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181575918.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:13 Heat of formation + Delta-G solvation = -48.799309 kcal Electronic energy + Delta-G solvation = -21856.397651 eV Core-core repulsion = 18799.807785 eV Total energy + Delta-G solvation = -3056.589865 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.01915 -39.86537 -37.37127 -35.10563 -34.11278 -32.53912 -31.74971 -30.67514 -29.14850 -26.24773 -25.88582 -23.91670 -23.70157 -23.06393 -21.46804 -20.86220 -18.64849 -17.79307 -17.34846 -16.97277 -16.51614 -16.41108 -16.14596 -15.76316 -15.33234 -15.15364 -14.74727 -14.31559 -14.23731 -14.09646 -13.96665 -13.68354 -13.38107 -13.12008 -12.83632 -12.59921 -12.43883 -12.31677 -12.12067 -12.03978 -11.82593 -11.68654 -11.53611 -11.30038 -11.13497 -10.61343 -10.49815 -9.79276 -9.51358 -9.09592 -8.10379 -6.16007 0.49789 0.52899 1.41403 1.42456 1.53010 2.46541 2.84536 2.94251 3.21816 3.39056 3.77746 3.88477 3.98324 4.01944 4.03644 4.15907 4.19351 4.25183 4.31325 4.47538 4.51507 4.66087 4.68871 4.73885 4.75623 4.84658 4.95159 4.99667 5.09682 5.14816 5.18098 5.31072 5.33111 5.48247 5.58665 5.61344 5.63726 5.70573 5.88144 6.13779 6.15826 6.31804 6.44004 6.60932 6.97180 7.49626 9.01578 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.012193 B = 0.006977 C = 0.004747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.915585 B = 4011.946380 C = 5897.524955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.004 4.004 3 Si 0.958 3.042 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.499 4.499 8 H 0.057 0.943 9 C 0.053 3.947 10 C 0.145 3.855 11 H 0.061 0.939 12 N -0.661 5.661 13 C 0.061 3.939 14 H 0.063 0.937 15 C -0.109 4.109 16 C -0.148 4.148 17 C 0.054 3.946 18 O -0.402 6.402 19 C 0.047 3.953 20 C -0.111 4.111 21 C -0.133 4.133 22 C -0.118 4.118 23 C -0.130 4.130 24 C -0.119 4.119 25 C -0.135 4.135 26 H 0.259 0.741 27 H -0.008 1.008 28 H -0.013 1.013 29 H 0.338 0.662 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.096 0.904 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.111 0.889 36 H 0.081 0.919 37 H 0.054 0.946 38 H 0.117 0.883 39 H 0.144 0.856 40 H 0.149 0.851 41 H 0.143 0.857 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.288 -15.800 -3.741 18.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.200 4.200 3 Si 0.784 3.216 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.538 4.538 8 H 0.076 0.924 9 C 0.015 3.985 10 C 0.035 3.965 11 H 0.080 0.920 12 N -0.292 5.292 13 C -0.050 4.050 14 H 0.081 0.919 15 C -0.147 4.147 16 C -0.186 4.186 17 C -0.022 4.022 18 O -0.320 6.320 19 C -0.032 4.032 20 C -0.112 4.112 21 C -0.151 4.151 22 C -0.136 4.136 23 C -0.148 4.148 24 C -0.137 4.137 25 C -0.154 4.154 26 H 0.068 0.932 27 H 0.011 0.989 28 H 0.006 0.994 29 H 0.159 0.841 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.114 0.886 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.129 0.871 36 H 0.100 0.900 37 H 0.072 0.928 38 H 0.135 0.865 39 H 0.162 0.838 40 H 0.167 0.833 41 H 0.161 0.839 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 8.471 -15.177 -3.512 17.732 hybrid contribution -0.416 0.667 0.026 0.786 sum 8.056 -14.510 -3.486 16.958 Atomic orbital electron populations 1.70104 1.07586 1.27180 1.53250 1.25857 0.95609 1.02822 0.95757 0.85552 0.78622 0.79283 0.78154 1.20206 1.21202 1.19137 1.21434 0.93213 0.91403 1.47723 0.92435 1.18865 0.93037 0.92221 0.94347 1.20522 0.93803 0.90564 0.91562 0.92027 1.60619 1.04237 1.57954 1.06431 1.22231 0.91006 0.91996 0.99768 0.91892 1.21560 0.94521 1.00131 0.98488 1.22183 0.97261 0.95812 1.03379 1.22808 0.93100 0.94630 0.91674 1.87890 1.22850 1.65434 1.55791 1.23361 0.85345 0.93064 1.01383 1.20904 0.99045 0.96633 0.94660 1.21044 0.99034 0.96838 0.98201 1.21397 0.98510 0.94780 0.98942 1.21455 0.99955 1.00992 0.92403 1.21414 0.97120 0.95229 0.99970 1.21227 1.00817 0.96513 0.96817 0.93244 0.98941 0.99436 0.84097 0.91378 0.92130 0.88589 0.91754 0.92302 0.87052 0.90040 0.92751 0.86493 0.83833 0.83336 0.83927 0.86518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.23 13.29 21.45 0.28 -57.95 16 2 C 0.00 -0.25 5.46 84.66 0.46 0.21 16 3 Si 0.96 45.77 29.54 68.60 2.03 47.80 16 4 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 5 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 6 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 7 C -0.50 -28.61 8.84 25.60 0.23 -28.38 16 8 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 9 C 0.05 2.79 4.63 29.85 0.14 2.93 16 10 C 0.15 6.01 2.17 44.17 0.10 6.10 16 11 H 0.06 2.66 7.30 -2.39 -0.02 2.64 16 12 N -0.66 -24.47 5.76 -472.85 -2.72 -27.20 16 13 C 0.06 1.90 2.67 45.01 0.12 2.02 16 14 H 0.06 2.20 7.44 -2.39 -0.02 2.18 16 15 C -0.11 -2.95 5.64 30.71 0.17 -2.78 16 16 C -0.15 -3.13 6.14 30.69 0.19 -2.94 16 17 C 0.05 1.10 6.84 72.01 0.49 1.59 16 18 O -0.40 -11.08 10.77 -148.98 -1.60 -12.69 16 19 C 0.05 1.33 5.48 72.01 0.39 1.72 16 20 C -0.11 -3.90 2.94 -19.86 -0.06 -3.96 16 21 C -0.13 -4.17 8.49 22.27 0.19 -3.98 16 22 C -0.12 -3.04 10.05 22.27 0.22 -2.82 16 23 C -0.13 -3.09 10.05 22.27 0.22 -2.86 16 24 C -0.12 -3.12 10.05 22.27 0.22 -2.90 16 25 C -0.14 -4.35 9.66 22.27 0.22 -4.14 16 26 H 0.26 15.20 8.31 -92.71 -0.77 14.42 16 27 H -0.01 -0.45 8.14 -2.38 -0.02 -0.47 16 28 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 29 H 0.34 11.65 6.08 -89.69 -0.55 11.11 16 30 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.08 2.51 6.14 -2.39 -0.01 2.50 16 37 H 0.05 1.42 8.09 -2.39 -0.02 1.40 16 38 H 0.12 3.62 6.53 -2.91 -0.02 3.60 16 39 H 0.14 2.85 8.06 -2.91 -0.02 2.82 16 40 H 0.15 2.52 8.06 -2.91 -0.02 2.49 16 41 H 0.14 2.90 8.06 -2.91 -0.02 2.88 16 42 H 0.12 3.69 8.04 -2.91 -0.02 3.66 16 Total: -1.00 -67.35 334.73 1.74 -65.61 By element: Atomic # 1 Polarization: 24.17 SS G_CDS: 0.45 Total: 24.61 kcal Atomic # 6 Polarization: -43.50 SS G_CDS: 3.31 Total: -40.19 kcal Atomic # 7 Polarization: -82.71 SS G_CDS: -2.44 Total: -85.14 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: -1.60 Total: -12.69 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -67.35 1.74 -65.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181575918.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.811 kcal (2) G-P(sol) polarization free energy of solvation -67.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds