Wall clock time and date at job start Mon Mar 30 2020 07:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86804 * 120.00210 * 2 1 4 4 H 1.48498 * 109.46954 * 239.99747 * 3 2 1 5 5 H 1.48498 * 109.46865 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47151 * 120.00113 * 3 2 1 7 7 C 1.37884 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00132 * 189.53318 * 7 2 1 9 9 C 1.50692 * 119.99856 * 9.52318 * 7 2 1 10 10 H 1.09000 * 109.47546 * 185.31939 * 9 7 2 11 11 N 1.46907 * 109.47097 * 305.31646 * 9 7 2 12 12 C 1.46893 * 111.00228 * 274.99620 * 11 9 7 13 13 C 1.53000 * 109.47245 * 179.97438 * 12 11 9 14 14 C 1.53006 * 109.47034 * 180.02562 * 13 12 11 15 15 H 1.08997 * 110.90714 * 302.87000 * 14 13 12 16 16 C 1.55308 * 110.84233 * 179.28830 * 14 13 12 17 17 C 1.54945 * 100.93710 * 207.67578 * 16 14 13 18 18 O 1.43649 * 105.14075 * 36.44434 * 17 16 14 19 19 C 1.43242 * 109.96899 * 335.57453 * 18 17 16 20 20 C 1.50700 * 109.47356 * 65.31551 * 9 7 2 21 21 C 1.38230 * 120.00256 * 272.39332 * 20 9 7 22 22 C 1.38234 * 119.99879 * 179.78472 * 21 20 9 23 23 C 1.38235 * 120.00241 * 0.46327 * 22 21 20 24 24 C 1.38243 * 119.99682 * 359.76731 * 23 22 21 25 25 C 1.38232 * 120.00058 * 0.02562 * 24 23 22 26 26 H 0.97002 * 119.99803 * 359.97438 * 1 2 3 27 27 H 1.00902 * 110.99421 * 151.04718 * 11 9 7 28 28 H 1.09007 * 109.46905 * 60.00310 * 12 11 9 29 29 H 1.09003 * 109.47795 * 300.00396 * 12 11 9 30 30 H 1.08998 * 109.46743 * 60.00329 * 13 12 11 31 31 H 1.08994 * 109.47423 * 300.00401 * 13 12 11 32 32 H 1.08995 * 111.13042 * 325.59331 * 16 14 13 33 33 H 1.08999 * 111.12526 * 89.71582 * 16 14 13 34 34 H 1.09005 * 110.31210 * 277.52808 * 17 16 14 35 35 H 1.08999 * 110.31312 * 155.36048 * 17 16 14 36 36 H 1.08994 * 109.83036 * 121.22197 * 19 18 17 37 37 H 1.08997 * 109.82650 * 242.19748 * 19 18 17 38 38 H 1.07997 * 119.99721 * 359.97438 * 21 20 9 39 39 H 1.07997 * 120.00165 * 180.25776 * 22 21 20 40 40 H 1.08000 * 120.00305 * 179.79588 * 23 22 21 41 41 H 1.07996 * 119.99649 * 179.97438 * 24 23 22 42 42 H 1.07996 * 119.99697 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0733 -1.2007 0.1544 9 6 1.2666 -2.4900 -0.2170 10 1 1.9550 -3.3257 -0.0909 11 7 0.1762 -2.6020 0.7611 12 6 0.6617 -3.1633 2.0288 13 6 -0.4994 -3.2638 3.0200 14 6 0.0065 -3.8479 4.3406 15 1 0.4715 -4.8210 4.1827 16 6 -1.1451 -3.9474 5.3779 17 6 -0.3551 -3.8329 6.7060 18 8 0.7009 -2.8976 6.4349 19 6 0.9869 -2.8759 5.0315 20 6 0.6952 -2.5160 -1.6113 21 6 -0.5538 -1.9769 -1.8566 22 6 -1.0759 -1.9968 -3.1364 23 6 -0.3531 -2.5642 -4.1691 24 6 0.8940 -3.1076 -3.9228 25 6 1.4179 -3.0839 -2.6439 26 1 -0.4850 0.8401 0.0004 27 1 -0.5862 -3.1499 0.3915 28 1 1.4354 -2.5151 2.4405 29 1 1.0758 -4.1560 1.8518 30 1 -1.2733 -3.9117 2.6085 31 1 -0.9130 -2.2710 3.1970 32 1 -1.8472 -3.1213 5.2660 33 1 -1.6568 -4.9071 5.3060 34 1 0.0598 -4.8018 6.9842 35 1 -1.0007 -3.4552 7.4989 36 1 0.8454 -1.8682 4.6409 37 1 2.0129 -3.2003 4.8582 38 1 -1.1204 -1.5376 -1.0489 39 1 -2.0500 -1.5719 -3.3288 40 1 -0.7625 -2.5827 -5.1683 41 1 1.4585 -3.5513 -4.7295 42 1 2.3920 -3.5088 -2.4515 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236224486.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:26 Heat of formation + Delta-G solvation = -21.195284 kcal Electronic energy + Delta-G solvation = -21339.923563 eV Core-core repulsion = 18284.530698 eV Total energy + Delta-G solvation = -3055.392865 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.33543 -38.33034 -35.73686 -33.73539 -31.82476 -30.55561 -29.85419 -29.30084 -27.13965 -25.65872 -23.13780 -22.37434 -21.66471 -20.94940 -20.06941 -19.75429 -16.70398 -16.33040 -15.88316 -15.62169 -14.92191 -14.66206 -14.42554 -13.97447 -13.92034 -13.32782 -13.20686 -13.01043 -12.60159 -12.54267 -12.19719 -11.86777 -11.62595 -11.47101 -11.19236 -11.16382 -10.87858 -10.76728 -10.62143 -10.52022 -10.23564 -10.08997 -9.87673 -9.59586 -9.38162 -9.27211 -8.44575 -7.89146 -7.51138 -6.84597 -5.83297 -4.01216 2.40000 2.49620 3.34622 3.38889 3.43105 4.00664 4.46798 4.57890 4.80729 4.89700 5.01354 5.22400 5.32918 5.38704 5.53505 5.63605 5.68236 5.74801 5.81927 5.87550 5.94281 5.95671 5.99396 6.12328 6.21944 6.27986 6.33804 6.35178 6.57329 6.67418 6.79176 6.85948 6.95375 7.05754 7.11769 7.20061 7.42191 7.60172 7.87277 7.91333 8.15332 8.22257 8.44945 8.83170 9.09407 9.64891 11.10487 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.016942 B = 0.005074 C = 0.004271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.261251 B = 5516.775664 C = 6553.618395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.092 3.908 3 Si 0.876 3.124 4 H -0.279 1.279 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.523 4.523 8 H 0.053 0.947 9 C 0.251 3.749 10 H -0.002 1.002 11 N -0.641 5.641 12 C 0.072 3.928 13 C -0.102 4.102 14 C -0.118 4.118 15 H 0.078 0.922 16 C -0.152 4.152 17 C 0.051 3.949 18 O -0.391 6.391 19 C 0.054 3.946 20 C -0.041 4.041 21 C -0.080 4.080 22 C -0.143 4.143 23 C -0.153 4.153 24 C -0.141 4.141 25 C -0.133 4.133 26 H 0.254 0.746 27 H 0.305 0.695 28 H 0.071 0.929 29 H 0.000 1.000 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.055 0.945 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.159 0.841 39 H 0.103 0.897 40 H 0.100 0.900 41 H 0.102 0.898 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.503 -7.954 4.506 9.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.116 4.116 3 Si 0.704 3.296 4 H -0.205 1.205 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.561 4.561 8 H 0.071 0.929 9 C 0.144 3.856 10 H 0.016 0.984 11 N -0.271 5.271 12 C -0.058 4.058 13 C -0.140 4.140 14 C -0.137 4.137 15 H 0.097 0.903 16 C -0.190 4.190 17 C -0.026 4.026 18 O -0.310 6.310 19 C -0.023 4.023 20 C -0.043 4.043 21 C -0.098 4.098 22 C -0.161 4.161 23 C -0.171 4.171 24 C -0.159 4.159 25 C -0.152 4.152 26 H 0.064 0.936 27 H 0.121 0.879 28 H 0.089 0.911 29 H 0.018 0.982 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.073 0.927 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.084 0.916 38 H 0.176 0.824 39 H 0.121 0.879 40 H 0.118 0.882 41 H 0.120 0.880 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.506 -7.042 4.877 9.256 hybrid contribution 0.652 0.022 -0.669 0.935 sum -2.854 -7.021 4.208 8.668 Atomic orbital electron populations 1.69992 1.05513 1.25232 1.45224 1.24821 0.94566 0.98174 0.94043 0.86946 0.80059 0.84095 0.78506 1.20483 1.21332 1.20399 1.20776 0.93115 0.90304 1.51915 0.92927 1.18132 0.87990 0.95071 0.84443 0.98409 1.60808 1.10007 1.53089 1.03165 1.21785 0.96305 0.95554 0.92198 1.21519 0.98516 1.01228 0.92736 1.22727 0.95452 0.99426 0.96123 0.90317 1.23327 0.98332 1.02973 0.94381 1.23319 0.88769 0.93042 0.97432 1.88379 1.55246 1.62594 1.24797 1.23302 0.98461 1.00487 0.80004 1.20538 0.93025 0.93302 0.97395 1.21745 0.96052 0.95155 0.96862 1.21162 0.99498 1.01242 0.94219 1.20820 0.95922 1.02303 0.98061 1.20802 0.96308 1.02416 0.96370 1.20911 0.99431 1.01781 0.93081 0.93604 0.87851 0.91103 0.98245 0.92555 0.90649 0.90156 0.90314 0.92675 0.90226 0.90252 0.91571 0.82356 0.87896 0.88158 0.87974 0.87747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -21.58 9.24 55.43 0.51 -21.06 16 2 C 0.09 2.41 5.20 -17.82 -0.09 2.32 16 3 Si 0.88 20.88 29.55 -169.99 -5.02 15.86 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.52 -13.75 8.62 -34.44 -0.30 -14.05 16 8 H 0.05 1.41 7.83 -52.49 -0.41 1.00 16 9 C 0.25 5.91 2.49 -70.02 -0.17 5.73 16 10 H 0.00 -0.04 7.72 -51.93 -0.40 -0.44 16 11 N -0.64 -13.81 4.34 -109.19 -0.47 -14.28 16 12 C 0.07 1.34 5.33 -3.83 -0.02 1.32 16 13 C -0.10 -1.58 4.86 -26.73 -0.13 -1.71 16 14 C -0.12 -1.56 3.03 -88.67 -0.27 -1.83 16 15 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 16 C -0.15 -1.72 6.62 -24.48 -0.16 -1.88 16 17 C 0.05 0.59 7.78 38.18 0.30 0.88 16 18 O -0.39 -5.91 11.36 -35.23 -0.40 -6.31 16 19 C 0.05 0.79 6.57 37.88 0.25 1.04 16 20 C -0.04 -0.94 4.65 -104.62 -0.49 -1.42 16 21 C -0.08 -1.77 7.66 -39.59 -0.30 -2.07 16 22 C -0.14 -2.84 10.05 -39.58 -0.40 -3.24 16 23 C -0.15 -2.83 10.05 -39.58 -0.40 -3.23 16 24 C -0.14 -2.65 10.05 -39.58 -0.40 -3.05 16 25 C -0.13 -2.78 9.69 -39.58 -0.38 -3.17 16 26 H 0.25 6.52 8.31 -40.82 -0.34 6.18 16 27 H 0.30 6.26 7.67 -39.29 -0.30 5.96 16 28 H 0.07 1.46 7.33 -51.92 -0.38 1.08 16 29 H 0.00 -0.01 8.06 -51.93 -0.42 -0.43 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.07 1.29 8.07 -51.93 -0.42 0.87 16 32 H 0.08 0.93 8.04 -51.93 -0.42 0.51 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.08 1.29 7.73 -51.93 -0.40 0.89 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.16 3.75 5.59 -52.49 -0.29 3.46 16 39 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 40 H 0.10 1.57 8.06 -52.49 -0.42 1.15 16 41 H 0.10 1.63 8.06 -52.49 -0.42 1.21 16 42 H 0.10 2.04 8.06 -52.49 -0.42 1.62 16 LS Contribution 335.86 15.07 5.06 5.06 Total: -1.00 -27.26 335.86 -10.10 -37.35 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -6.81 Total: 7.74 kcal Atomic # 6 Polarization: -21.39 SS G_CDS: -2.97 Total: -24.36 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: 0.04 Total: -35.34 kcal Atomic # 8 Polarization: -5.91 SS G_CDS: -0.40 Total: -6.31 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -27.26 -10.10 -37.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236224486.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.158 kcal (2) G-P(sol) polarization free energy of solvation -27.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds