Wall clock time and date at job start Mon Mar 30 2020 07:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86804 * 120.00210 * 2 1 4 4 H 1.48498 * 109.46954 * 239.99747 * 3 2 1 5 5 H 1.48498 * 109.46865 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47151 * 120.00113 * 3 2 1 7 7 C 1.37884 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00132 * 189.53318 * 7 2 1 9 9 C 1.50692 * 119.99856 * 9.52318 * 7 2 1 10 10 H 1.09000 * 109.47546 * 185.31939 * 9 7 2 11 11 N 1.46907 * 109.47097 * 305.31646 * 9 7 2 12 12 C 1.46893 * 111.00228 * 274.99620 * 11 9 7 13 13 C 1.53000 * 109.47245 * 179.97438 * 12 11 9 14 14 C 1.53006 * 109.47034 * 180.02562 * 13 12 11 15 15 H 1.08997 * 110.90714 * 302.87000 * 14 13 12 16 16 C 1.55308 * 110.84233 * 179.28830 * 14 13 12 17 17 C 1.54945 * 100.93710 * 207.67578 * 16 14 13 18 18 O 1.43649 * 105.14075 * 36.44434 * 17 16 14 19 19 C 1.43242 * 109.96899 * 335.57453 * 18 17 16 20 20 C 1.50700 * 109.47356 * 65.31551 * 9 7 2 21 21 C 1.38230 * 120.00256 * 272.39332 * 20 9 7 22 22 C 1.38234 * 119.99879 * 179.78472 * 21 20 9 23 23 C 1.38235 * 120.00241 * 0.46327 * 22 21 20 24 24 C 1.38243 * 119.99682 * 359.76731 * 23 22 21 25 25 C 1.38232 * 120.00058 * 0.02562 * 24 23 22 26 26 H 0.97002 * 119.99803 * 359.97438 * 1 2 3 27 27 H 1.00902 * 110.99421 * 151.04718 * 11 9 7 28 28 H 1.09007 * 109.46905 * 60.00310 * 12 11 9 29 29 H 1.09003 * 109.47795 * 300.00396 * 12 11 9 30 30 H 1.08998 * 109.46743 * 60.00329 * 13 12 11 31 31 H 1.08994 * 109.47423 * 300.00401 * 13 12 11 32 32 H 1.08995 * 111.13042 * 325.59331 * 16 14 13 33 33 H 1.08999 * 111.12526 * 89.71582 * 16 14 13 34 34 H 1.09005 * 110.31210 * 277.52808 * 17 16 14 35 35 H 1.08999 * 110.31312 * 155.36048 * 17 16 14 36 36 H 1.08994 * 109.83036 * 121.22197 * 19 18 17 37 37 H 1.08997 * 109.82650 * 242.19748 * 19 18 17 38 38 H 1.07997 * 119.99721 * 359.97438 * 21 20 9 39 39 H 1.07997 * 120.00165 * 180.25776 * 22 21 20 40 40 H 1.08000 * 120.00305 * 179.79588 * 23 22 21 41 41 H 1.07996 * 119.99649 * 179.97438 * 24 23 22 42 42 H 1.07996 * 119.99697 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0733 -1.2007 0.1544 9 6 1.2666 -2.4900 -0.2170 10 1 1.9550 -3.3257 -0.0909 11 7 0.1762 -2.6020 0.7611 12 6 0.6617 -3.1633 2.0288 13 6 -0.4994 -3.2638 3.0200 14 6 0.0065 -3.8479 4.3406 15 1 0.4715 -4.8210 4.1827 16 6 -1.1451 -3.9474 5.3779 17 6 -0.3551 -3.8329 6.7060 18 8 0.7009 -2.8976 6.4349 19 6 0.9869 -2.8759 5.0315 20 6 0.6952 -2.5160 -1.6113 21 6 -0.5538 -1.9769 -1.8566 22 6 -1.0759 -1.9968 -3.1364 23 6 -0.3531 -2.5642 -4.1691 24 6 0.8940 -3.1076 -3.9228 25 6 1.4179 -3.0839 -2.6439 26 1 -0.4850 0.8401 0.0004 27 1 -0.5862 -3.1499 0.3915 28 1 1.4354 -2.5151 2.4405 29 1 1.0758 -4.1560 1.8518 30 1 -1.2733 -3.9117 2.6085 31 1 -0.9130 -2.2710 3.1970 32 1 -1.8472 -3.1213 5.2660 33 1 -1.6568 -4.9071 5.3060 34 1 0.0598 -4.8018 6.9842 35 1 -1.0007 -3.4552 7.4989 36 1 0.8454 -1.8682 4.6409 37 1 2.0129 -3.2003 4.8582 38 1 -1.1204 -1.5376 -1.0489 39 1 -2.0500 -1.5719 -3.3288 40 1 -0.7625 -2.5827 -5.1683 41 1 1.4585 -3.5513 -4.7295 42 1 2.3920 -3.5088 -2.4515 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236224486.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:25 Heat of formation + Delta-G solvation = -35.382521 kcal Electronic energy + Delta-G solvation = -21340.538767 eV Core-core repulsion = 18284.530698 eV Total energy + Delta-G solvation = -3056.008070 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.44506 -39.92288 -37.31182 -35.21129 -33.55519 -32.00912 -31.38054 -30.54027 -28.70007 -27.32250 -24.64101 -23.79156 -23.05799 -22.29229 -21.65048 -21.11599 -18.19461 -17.81594 -17.35849 -16.87373 -16.74745 -16.06299 -15.75965 -15.65143 -15.36327 -14.76698 -14.68721 -14.25357 -14.14551 -13.90348 -13.75445 -13.49773 -13.20043 -12.80288 -12.72242 -12.69339 -12.50958 -12.25946 -12.09277 -11.84416 -11.65130 -11.52662 -11.45188 -11.22934 -11.08955 -10.48272 -10.43236 -9.46958 -9.15537 -8.58349 -7.80058 -6.04955 0.81228 0.92976 1.41402 1.43714 1.48199 2.49018 2.97120 3.23242 3.35610 3.52769 3.66639 3.95538 4.11512 4.30002 4.33275 4.36456 4.36950 4.40751 4.47109 4.57371 4.68288 4.76939 4.81523 4.84704 4.90802 4.98111 4.98288 5.01486 5.06110 5.18723 5.22317 5.39555 5.46501 5.49303 5.62282 5.78942 5.86188 6.01669 6.06313 6.23115 6.34052 6.53484 6.62079 7.04884 7.27755 7.62010 9.08364 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.016942 B = 0.005074 C = 0.004271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.261251 B = 5516.775664 C = 6553.618395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.060 3.940 3 Si 0.921 3.079 4 H -0.282 1.282 5 H -0.283 1.283 6 H -0.281 1.281 7 C -0.545 4.545 8 H 0.035 0.965 9 C 0.253 3.747 10 H -0.014 1.014 11 N -0.650 5.650 12 C 0.075 3.925 13 C -0.087 4.087 14 C -0.112 4.112 15 H 0.093 0.907 16 C -0.144 4.144 17 C 0.044 3.956 18 O -0.413 6.413 19 C 0.054 3.946 20 C -0.064 4.064 21 C -0.095 4.095 22 C -0.148 4.148 23 C -0.146 4.146 24 C -0.137 4.137 25 C -0.149 4.149 26 H 0.251 0.749 27 H 0.311 0.689 28 H 0.044 0.956 29 H 0.008 0.992 30 H 0.071 0.929 31 H 0.054 0.946 32 H 0.075 0.925 33 H 0.106 0.894 34 H 0.073 0.927 35 H 0.096 0.904 36 H 0.054 0.946 37 H 0.064 0.936 38 H 0.138 0.862 39 H 0.124 0.876 40 H 0.138 0.862 41 H 0.136 0.864 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.542 -9.097 3.632 10.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.147 4.147 3 Si 0.748 3.252 4 H -0.208 1.208 5 H -0.209 1.209 6 H -0.206 1.206 7 C -0.583 4.583 8 H 0.053 0.947 9 C 0.145 3.855 10 H 0.004 0.996 11 N -0.280 5.280 12 C -0.055 4.055 13 C -0.125 4.125 14 C -0.131 4.131 15 H 0.111 0.889 16 C -0.182 4.182 17 C -0.032 4.032 18 O -0.333 6.333 19 C -0.023 4.023 20 C -0.066 4.066 21 C -0.114 4.114 22 C -0.166 4.166 23 C -0.164 4.164 24 C -0.155 4.155 25 C -0.168 4.168 26 H 0.061 0.939 27 H 0.128 0.872 28 H 0.062 0.938 29 H 0.026 0.974 30 H 0.090 0.910 31 H 0.072 0.928 32 H 0.094 0.906 33 H 0.124 0.876 34 H 0.091 0.909 35 H 0.115 0.885 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.156 0.844 39 H 0.142 0.858 40 H 0.156 0.844 41 H 0.154 0.846 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -4.554 -8.192 4.011 10.195 hybrid contribution 0.978 0.324 -0.428 1.116 sum -3.576 -7.867 3.583 9.355 Atomic orbital electron populations 1.70108 1.05799 1.25217 1.45435 1.25249 0.95306 0.99951 0.94191 0.86252 0.79121 0.81835 0.77995 1.20844 1.20875 1.20632 1.20945 0.92579 0.92067 1.52758 0.94683 1.18006 0.88265 0.93343 0.85896 0.99612 1.60633 1.09756 1.53938 1.03640 1.21764 0.97008 0.95016 0.91694 1.21344 0.97402 1.00624 0.93143 1.22667 0.96091 0.99221 0.95154 0.88907 1.23311 0.97430 1.04291 0.93139 1.23587 0.88265 0.93310 0.98006 1.88352 1.56585 1.63885 1.24523 1.23204 0.98995 0.99604 0.80460 1.20506 0.93889 0.95036 0.97121 1.21585 0.96031 0.96146 0.97623 1.21431 1.00564 1.01080 0.93563 1.21246 0.95413 1.00421 0.99329 1.21196 0.96623 1.01439 0.96229 1.21118 0.99729 1.02101 0.93847 0.93938 0.87225 0.93780 0.97376 0.91012 0.92761 0.90650 0.87597 0.90911 0.88549 0.92760 0.91738 0.84405 0.85799 0.84426 0.84581 0.87315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.34 9.24 21.45 0.20 -44.14 16 2 C 0.06 3.20 5.20 84.66 0.44 3.64 16 3 Si 0.92 43.64 29.55 68.60 2.03 45.66 16 4 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 5 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 6 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 7 C -0.55 -29.70 8.62 25.60 0.22 -29.48 16 8 H 0.03 1.96 7.83 -2.91 -0.02 1.94 16 9 C 0.25 12.30 2.49 43.42 0.11 12.41 16 10 H -0.01 -0.68 7.72 -2.39 -0.02 -0.69 16 11 N -0.65 -28.85 4.34 -499.36 -2.17 -31.02 16 12 C 0.07 2.88 5.33 86.30 0.46 3.34 16 13 C -0.09 -2.69 4.86 30.60 0.15 -2.54 16 14 C -0.11 -2.87 3.03 -9.53 -0.03 -2.90 16 15 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 16 C -0.14 -2.94 6.62 32.05 0.21 -2.73 16 17 C 0.04 0.93 7.78 72.65 0.56 1.49 16 18 O -0.41 -12.35 11.36 -148.98 -1.69 -14.04 16 19 C 0.05 1.62 6.57 72.45 0.48 2.10 16 20 C -0.06 -2.95 4.65 -19.87 -0.09 -3.04 16 21 C -0.10 -4.22 7.66 22.27 0.17 -4.05 16 22 C -0.15 -5.60 10.05 22.27 0.22 -5.38 16 23 C -0.15 -4.92 10.05 22.27 0.22 -4.69 16 24 C -0.14 -4.76 10.05 22.27 0.22 -4.54 16 25 C -0.15 -6.12 9.69 22.27 0.22 -5.90 16 26 H 0.25 13.09 8.31 -92.71 -0.77 12.32 16 27 H 0.31 13.05 7.67 -89.69 -0.69 12.36 16 28 H 0.04 1.92 7.33 -2.38 -0.02 1.90 16 29 H 0.01 0.30 8.06 -2.39 -0.02 0.28 16 30 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.05 1.91 8.07 -2.39 -0.02 1.89 16 32 H 0.07 1.62 8.04 -2.39 -0.02 1.61 16 33 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 35 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.05 1.88 7.73 -2.39 -0.02 1.86 16 37 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.14 6.66 5.59 -2.91 -0.02 6.64 16 39 H 0.12 4.06 8.06 -2.91 -0.02 4.04 16 40 H 0.14 3.61 8.06 -2.91 -0.02 3.59 16 41 H 0.14 3.77 8.06 -2.91 -0.02 3.75 16 42 H 0.11 4.23 8.06 -2.91 -0.02 4.21 16 Total: -1.00 -59.56 335.86 2.23 -57.33 By element: Atomic # 1 Polarization: 28.19 SS G_CDS: 0.30 Total: 28.49 kcal Atomic # 6 Polarization: -45.85 SS G_CDS: 3.57 Total: -42.28 kcal Atomic # 7 Polarization: -73.20 SS G_CDS: -1.97 Total: -75.16 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: -1.69 Total: -14.04 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.66 kcal Total: -59.56 2.23 -57.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236224486.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.946 kcal (2) G-P(sol) polarization free energy of solvation -59.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds