Wall clock time and date at job start Mon Mar 30 2020 07:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.52994 * 109.47119 * 180.02562 * 10 9 7 12 12 O 1.42906 * 109.47101 * 180.02562 * 11 10 9 13 13 C 1.35897 * 117.00058 * 179.97438 * 12 11 10 14 14 C 1.38764 * 120.17381 * 359.72194 * 13 12 11 15 15 C 1.37828 * 119.71268 * 179.61069 * 14 13 12 16 16 C 1.38965 * 120.62112 * 0.56944 * 15 14 13 17 17 C 1.37708 * 119.77215 * 359.94279 * 16 15 14 18 18 C 1.38426 * 120.17198 * 179.97438 * 13 12 11 19 19 C 1.50646 * 122.55999 * 179.24671 * 17 16 15 20 20 H 1.08995 * 109.24987 * 257.52335 * 19 17 16 21 21 N 1.46899 * 109.24842 * 138.10324 * 19 17 16 22 22 C 1.52732 * 110.60088 * 17.81715 * 19 17 16 23 23 C 1.53322 * 108.39449 * 308.92188 * 22 19 17 24 24 C 1.50655 * 117.68806 * 180.02562 * 16 15 14 25 25 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 27 27 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 28 28 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 29 29 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 30 30 H 1.08998 * 109.46640 * 299.99314 * 11 10 9 31 31 H 1.08994 * 109.47663 * 59.99852 * 11 10 9 32 32 H 1.08002 * 120.14325 * 359.86444 * 14 13 12 33 33 H 1.07996 * 119.69011 * 180.27811 * 15 14 13 34 34 H 1.07997 * 119.74823 * 0.02562 * 18 13 12 35 35 H 1.00910 * 110.99811 * 60.00183 * 21 19 17 36 36 H 1.00897 * 110.99689 * 183.95204 * 21 19 17 37 37 H 1.09004 * 109.67247 * 189.19784 * 22 19 17 38 38 H 1.08993 * 109.70987 * 68.66902 * 22 19 17 39 39 H 1.08996 * 109.68225 * 310.15094 * 23 22 19 40 40 H 1.09002 * 109.67925 * 189.59749 * 23 22 19 41 41 H 1.08995 * 109.25254 * 318.11032 * 24 16 15 42 42 H 1.08997 * 109.25535 * 77.58454 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 6 1.4800 -4.9871 -0.0171 12 8 2.4086 -6.0733 -0.0212 13 6 1.8891 -7.3291 -0.0268 14 6 0.5140 -7.5150 -0.0224 15 6 -0.0026 -8.7927 -0.0363 16 6 0.8407 -9.8972 -0.0427 17 6 2.2057 -9.7153 -0.0363 18 6 2.7290 -8.4294 -0.0316 19 6 3.1770 -10.8668 -0.0260 20 1 3.5734 -10.9935 0.9814 21 7 4.2832 -10.5755 -0.9477 22 6 2.4855 -12.1571 -0.4612 23 6 1.2108 -12.3282 0.3735 24 6 0.2053 -11.2631 -0.0584 25 1 -0.4850 0.8401 -0.0004 26 1 0.6242 -2.5609 0.8844 27 1 0.6244 -2.5529 -0.8956 28 1 2.8718 -3.6005 -0.9002 29 1 2.8717 -3.6084 0.8798 30 1 0.8531 -5.0490 0.8724 31 1 0.8537 -5.0406 -0.9075 32 1 -0.1486 -6.6622 -0.0124 33 1 -1.0729 -8.9370 -0.0374 34 1 3.7995 -8.2864 -0.0305 35 1 4.7709 -9.7358 -0.6733 36 1 4.9172 -11.3579 -1.0102 37 1 3.1505 -13.0044 -0.2937 38 1 2.2267 -12.0970 -1.5183 39 1 1.4450 -12.2042 1.4308 40 1 0.7912 -13.3198 0.2038 41 1 -0.6440 -11.2722 0.6246 42 1 -0.1422 -11.4862 -1.0671 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236306520.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:23 Heat of formation + Delta-G solvation = -43.957478 kcal Electronic energy + Delta-G solvation = -20399.926157 eV Core-core repulsion = 17343.546249 eV Total energy + Delta-G solvation = -3056.379908 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.46268 -38.66099 -35.83556 -34.34878 -33.84992 -31.73464 -30.45995 -29.63578 -27.85519 -26.66389 -23.81986 -23.25878 -22.28151 -21.75059 -20.25539 -19.40808 -17.67300 -16.46064 -16.18998 -15.93410 -15.75866 -15.57567 -14.91013 -14.63428 -14.45324 -14.20339 -13.51491 -13.41295 -13.16827 -12.84808 -12.81913 -12.33629 -12.24826 -11.86427 -11.70864 -11.34544 -11.24553 -10.94706 -10.80077 -10.67325 -10.56581 -10.46360 -10.36404 -9.74785 -9.53365 -9.16610 -9.10762 -8.67993 -8.39151 -7.88093 -6.04342 -4.06878 1.35329 1.50319 3.30907 3.36868 3.40218 3.53559 3.74037 4.23885 4.41178 4.43984 4.53440 4.77220 4.88162 4.93496 5.05694 5.15307 5.23274 5.31884 5.32506 5.46295 5.52826 5.55409 5.62384 5.65418 5.70218 5.79479 5.85140 5.97791 6.03675 6.06167 6.36586 6.49846 6.55789 6.59550 6.64746 6.83468 6.92721 6.99094 7.17726 7.59240 7.71089 7.72108 7.94339 8.36303 8.99353 9.57439 11.07224 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.042871 B = 0.002753 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.969712 B =10166.636347 C =10734.185315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.521 4.521 8 H 0.057 0.943 9 C 0.025 3.975 10 C -0.108 4.108 11 C 0.059 3.941 12 O -0.317 6.317 13 C 0.139 3.861 14 C -0.206 4.206 15 C -0.080 4.080 16 C -0.120 4.120 17 C -0.033 4.033 18 C -0.152 4.152 19 C 0.134 3.866 20 H 0.046 0.954 21 N -0.844 5.844 22 C -0.113 4.113 23 C -0.118 4.118 24 C -0.073 4.073 25 H 0.261 0.739 26 H 0.018 0.982 27 H 0.019 0.981 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.131 0.869 33 H 0.122 0.878 34 H 0.124 0.876 35 H 0.345 0.655 36 H 0.341 0.659 37 H 0.063 0.937 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.678 -25.776 0.724 25.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.559 4.559 8 H 0.075 0.925 9 C -0.013 4.013 10 C -0.146 4.146 11 C -0.015 4.015 12 O -0.230 6.230 13 C 0.092 3.908 14 C -0.225 4.225 15 C -0.098 4.098 16 C -0.121 4.121 17 C -0.034 4.034 18 C -0.171 4.171 19 C 0.023 3.977 20 H 0.063 0.937 21 N -0.376 5.376 22 C -0.151 4.151 23 C -0.156 4.156 24 C -0.110 4.110 25 H 0.071 0.929 26 H 0.037 0.963 27 H 0.037 0.963 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.149 0.851 33 H 0.140 0.860 34 H 0.141 0.859 35 H 0.159 0.841 36 H 0.154 0.846 37 H 0.082 0.918 38 H 0.095 0.905 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.172 -25.507 0.175 25.600 hybrid contribution 0.732 1.070 0.795 1.520 sum 2.904 -24.437 0.970 24.628 Atomic orbital electron populations 1.69964 1.06088 1.26742 1.50699 1.25028 0.94886 0.99368 0.95199 0.86545 0.79826 0.83205 0.78157 1.20596 1.21185 1.19808 1.21190 0.93151 0.90727 1.50832 0.92453 1.19045 0.93835 0.90859 0.97516 1.21717 0.99873 0.91042 1.01936 1.23191 0.92226 0.85287 1.00804 1.86112 1.37270 1.11959 1.87684 1.18979 0.91803 0.85355 0.94628 1.21314 0.94383 0.98560 1.08207 1.20904 0.99358 0.91442 0.98140 1.19373 0.92349 0.95116 1.05271 1.19130 0.92860 0.92995 0.98369 1.20218 0.99369 0.89891 1.07605 1.20072 0.90788 0.92876 0.93940 0.93656 1.58776 1.14961 1.08864 1.54968 1.21582 0.96689 0.95609 1.01205 1.21522 0.95457 0.98656 0.99962 1.20366 0.97748 0.91118 1.01782 0.92913 0.96326 0.96311 0.92202 0.92234 0.92425 0.92369 0.85127 0.86029 0.85854 0.84057 0.84597 0.91816 0.90497 0.91697 0.91281 0.91082 0.90966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.85 13.29 55.43 0.74 -26.12 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.52 -14.79 9.11 -34.44 -0.31 -15.11 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.02 0.63 4.97 -27.88 -0.14 0.49 16 10 C -0.11 -2.29 5.52 -26.74 -0.15 -2.44 16 11 C 0.06 1.08 4.75 37.15 0.18 1.26 16 12 O -0.32 -5.67 10.14 -19.42 -0.20 -5.87 16 13 C 0.14 2.21 6.68 -39.32 -0.26 1.94 16 14 C -0.21 -2.99 9.04 -39.54 -0.36 -3.34 16 15 C -0.08 -1.00 9.60 -39.46 -0.38 -1.38 16 16 C -0.12 -1.41 5.74 -104.57 -0.60 -2.01 16 17 C -0.03 -0.40 5.55 -104.62 -0.58 -0.98 16 18 C -0.15 -2.13 9.13 -39.29 -0.36 -2.49 16 19 C 0.13 1.27 3.28 -69.03 -0.23 1.05 16 20 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 21 N -0.84 -7.52 9.06 -5.80 -0.05 -7.57 16 22 C -0.11 -0.89 5.49 -26.70 -0.15 -1.04 16 23 C -0.12 -0.87 5.98 -26.71 -0.16 -1.03 16 24 C -0.07 -0.63 5.67 -28.05 -0.16 -0.79 16 25 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 26 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 29 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.06 1.00 7.65 -51.93 -0.40 0.61 16 31 H 0.06 1.02 7.68 -51.93 -0.40 0.62 16 32 H 0.13 1.83 6.33 -52.49 -0.33 1.50 16 33 H 0.12 1.23 8.05 -52.49 -0.42 0.80 16 34 H 0.12 1.58 6.49 -52.49 -0.34 1.24 16 35 H 0.34 2.99 7.20 -39.29 -0.28 2.71 16 36 H 0.34 2.25 8.97 -39.29 -0.35 1.90 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 0.69 8.10 -51.93 -0.42 0.27 16 39 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 0.54 8.12 -51.93 -0.42 0.12 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 337.18 15.07 5.08 5.08 Total: -1.00 -31.07 337.18 -9.92 -40.99 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -6.71 Total: 1.17 kcal Atomic # 6 Polarization: -20.60 SS G_CDS: -3.75 Total: -24.35 kcal Atomic # 7 Polarization: -34.38 SS G_CDS: 0.68 Total: -33.69 kcal Atomic # 8 Polarization: -5.67 SS G_CDS: -0.20 Total: -5.87 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.07 -9.92 -40.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236306520.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.971 kcal (2) G-P(sol) polarization free energy of solvation -31.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds