Wall clock time and date at job start Mon Mar 30 2020 07:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.52994 * 109.47119 * 180.02562 * 10 9 7 12 12 O 1.42906 * 109.47101 * 180.02562 * 11 10 9 13 13 C 1.35897 * 117.00058 * 179.97438 * 12 11 10 14 14 C 1.38764 * 120.17381 * 359.72194 * 13 12 11 15 15 C 1.37828 * 119.71268 * 179.61069 * 14 13 12 16 16 C 1.38965 * 120.62112 * 0.56944 * 15 14 13 17 17 C 1.37708 * 119.77215 * 359.94279 * 16 15 14 18 18 C 1.38426 * 120.17198 * 179.97438 * 13 12 11 19 19 C 1.50646 * 122.55999 * 179.24671 * 17 16 15 20 20 H 1.08995 * 109.24987 * 257.52335 * 19 17 16 21 21 N 1.46899 * 109.24842 * 138.10324 * 19 17 16 22 22 C 1.52732 * 110.60088 * 17.81715 * 19 17 16 23 23 C 1.53322 * 108.39449 * 308.92188 * 22 19 17 24 24 C 1.50655 * 117.68806 * 180.02562 * 16 15 14 25 25 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 27 27 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 28 28 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 29 29 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 30 30 H 1.08998 * 109.46640 * 299.99314 * 11 10 9 31 31 H 1.08994 * 109.47663 * 59.99852 * 11 10 9 32 32 H 1.08002 * 120.14325 * 359.86444 * 14 13 12 33 33 H 1.07996 * 119.69011 * 180.27811 * 15 14 13 34 34 H 1.07997 * 119.74823 * 0.02562 * 18 13 12 35 35 H 1.00910 * 110.99811 * 60.00183 * 21 19 17 36 36 H 1.00897 * 110.99689 * 183.95204 * 21 19 17 37 37 H 1.09004 * 109.67247 * 189.19784 * 22 19 17 38 38 H 1.08993 * 109.70987 * 68.66902 * 22 19 17 39 39 H 1.08996 * 109.68225 * 310.15094 * 23 22 19 40 40 H 1.09002 * 109.67925 * 189.59749 * 23 22 19 41 41 H 1.08995 * 109.25254 * 318.11032 * 24 16 15 42 42 H 1.08997 * 109.25535 * 77.58454 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 6 1.4800 -4.9871 -0.0171 12 8 2.4086 -6.0733 -0.0212 13 6 1.8891 -7.3291 -0.0268 14 6 0.5140 -7.5150 -0.0224 15 6 -0.0026 -8.7927 -0.0363 16 6 0.8407 -9.8972 -0.0427 17 6 2.2057 -9.7153 -0.0363 18 6 2.7290 -8.4294 -0.0316 19 6 3.1770 -10.8668 -0.0260 20 1 3.5734 -10.9935 0.9814 21 7 4.2832 -10.5755 -0.9477 22 6 2.4855 -12.1571 -0.4612 23 6 1.2108 -12.3282 0.3735 24 6 0.2053 -11.2631 -0.0584 25 1 -0.4850 0.8401 -0.0004 26 1 0.6242 -2.5609 0.8844 27 1 0.6244 -2.5529 -0.8956 28 1 2.8718 -3.6005 -0.9002 29 1 2.8717 -3.6084 0.8798 30 1 0.8531 -5.0490 0.8724 31 1 0.8537 -5.0406 -0.9075 32 1 -0.1486 -6.6622 -0.0124 33 1 -1.0729 -8.9370 -0.0374 34 1 3.7995 -8.2864 -0.0305 35 1 4.7709 -9.7358 -0.6733 36 1 4.9172 -11.3579 -1.0102 37 1 3.1505 -13.0044 -0.2937 38 1 2.2267 -12.0970 -1.5183 39 1 1.4450 -12.2042 1.4308 40 1 0.7912 -13.3198 0.2038 41 1 -0.6440 -11.2722 0.6246 42 1 -0.1422 -11.4862 -1.0671 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236306520.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:22 Heat of formation + Delta-G solvation = -62.229395 kcal Electronic energy + Delta-G solvation = -20400.718486 eV Core-core repulsion = 17343.546249 eV Total energy + Delta-G solvation = -3057.172238 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.47404 -39.77718 -36.83520 -35.92998 -34.95063 -33.64819 -31.44953 -30.59437 -29.09523 -28.07943 -25.39861 -24.31907 -23.32282 -22.69064 -21.97011 -20.33402 -18.84098 -18.44996 -17.22424 -17.14508 -16.89062 -16.54713 -16.39027 -15.75974 -15.55732 -15.05507 -14.88426 -14.55549 -14.40270 -14.03823 -13.82880 -13.73905 -13.46966 -13.15922 -13.05471 -12.72960 -12.62464 -12.44351 -12.13018 -11.93988 -11.76974 -11.59696 -11.45659 -11.38054 -11.29009 -11.25595 -10.58793 -9.96009 -9.54025 -8.96297 -8.23869 -6.34979 0.33183 0.45422 1.39807 1.41144 1.52467 2.20813 2.41900 2.72004 3.09915 3.55635 3.66433 3.76978 3.90995 4.00828 4.02452 4.12092 4.20266 4.22262 4.34162 4.41261 4.46521 4.53601 4.64181 4.74711 4.78936 4.88520 4.99627 5.04184 5.04774 5.08991 5.11536 5.18385 5.40621 5.44703 5.45223 5.47498 5.62757 5.69185 5.78148 5.85394 6.18005 6.20093 6.47200 6.58373 6.80234 7.34302 8.88305 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.042871 B = 0.002753 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.969712 B =10166.636347 C =10734.185315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.967 3.033 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.546 4.546 8 H 0.060 0.940 9 C 0.029 3.971 10 C -0.096 4.096 11 C 0.073 3.927 12 O -0.332 6.332 13 C 0.104 3.896 14 C -0.220 4.220 15 C -0.085 4.085 16 C -0.118 4.118 17 C -0.039 4.039 18 C -0.160 4.160 19 C 0.133 3.867 20 H 0.053 0.947 21 N -0.853 5.853 22 C -0.109 4.109 23 C -0.115 4.115 24 C -0.075 4.075 25 H 0.265 0.735 26 H 0.000 1.000 27 H -0.001 1.001 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.127 0.873 33 H 0.146 0.854 34 H 0.128 0.872 35 H 0.344 0.656 36 H 0.355 0.645 37 H 0.084 0.916 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.175 -27.607 0.824 27.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.792 3.208 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.188 1.188 7 C -0.584 4.584 8 H 0.079 0.921 9 C -0.008 4.008 10 C -0.133 4.133 11 C -0.002 4.002 12 O -0.247 6.247 13 C 0.059 3.941 14 C -0.239 4.239 15 C -0.103 4.103 16 C -0.119 4.119 17 C -0.040 4.040 18 C -0.179 4.179 19 C 0.023 3.977 20 H 0.071 0.929 21 N -0.386 5.386 22 C -0.147 4.147 23 C -0.153 4.153 24 C -0.111 4.111 25 H 0.074 0.926 26 H 0.018 0.982 27 H 0.017 0.983 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.145 0.855 33 H 0.163 0.837 34 H 0.146 0.854 35 H 0.158 0.842 36 H 0.169 0.831 37 H 0.102 0.898 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.109 0.891 41 H 0.104 0.896 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.682 -27.371 0.273 27.503 hybrid contribution 0.553 1.510 0.755 1.776 sum 3.235 -25.861 1.028 26.083 Atomic orbital electron populations 1.70085 1.07754 1.27961 1.51379 1.25980 0.95826 1.03394 0.94534 0.85409 0.78629 0.78227 0.78572 1.19684 1.20537 1.18808 1.21626 0.93617 0.92117 1.51021 0.92136 1.18906 0.94131 0.92199 0.95565 1.21430 0.98819 0.91250 1.01826 1.22839 0.91692 0.84491 1.01192 1.86028 1.37252 1.12712 1.88659 1.19270 0.92886 0.84719 0.97246 1.21424 0.93883 0.99608 1.08954 1.21236 1.00838 0.90799 0.97399 1.19855 0.92270 0.96635 1.03127 1.19554 0.93913 0.93182 0.97353 1.20441 0.99629 0.90237 1.07586 1.20143 0.90493 0.92527 0.94566 0.92922 1.58763 1.15363 1.09548 1.54895 1.21582 0.97302 0.95282 1.00563 1.21543 0.94767 0.99236 0.99778 1.20473 0.98404 0.89521 1.02734 0.92598 0.98203 0.98270 0.92297 0.92226 0.91997 0.92124 0.85463 0.83654 0.85387 0.84162 0.83061 0.89762 0.91551 0.91614 0.89083 0.89644 0.90171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.75 13.29 21.45 0.28 -56.46 16 2 C 0.00 0.04 5.46 84.66 0.46 0.50 16 3 Si 0.97 44.53 29.54 68.60 2.03 46.55 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 6 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 7 C -0.55 -31.52 9.11 25.60 0.23 -31.28 16 8 H 0.06 3.37 7.74 -2.91 -0.02 3.34 16 9 C 0.03 1.55 4.97 29.85 0.15 1.70 16 10 C -0.10 -4.17 5.52 30.59 0.17 -4.00 16 11 C 0.07 2.73 4.75 71.98 0.34 3.07 16 12 O -0.33 -12.23 10.14 -92.39 -0.94 -13.16 16 13 C 0.10 3.37 6.68 22.44 0.15 3.52 16 14 C -0.22 -6.45 9.04 22.30 0.20 -6.24 16 15 C -0.08 -2.02 9.60 22.35 0.21 -1.81 16 16 C -0.12 -2.58 5.74 -19.83 -0.11 -2.69 16 17 C -0.04 -0.92 5.55 -19.86 -0.11 -1.03 16 18 C -0.16 -4.49 9.13 22.46 0.20 -4.28 16 19 C 0.13 2.28 3.28 44.06 0.14 2.43 16 20 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 21 N -0.85 -13.97 9.06 -172.25 -1.56 -15.53 16 22 C -0.11 -1.42 5.49 30.61 0.17 -1.25 16 23 C -0.12 -1.31 5.98 30.61 0.18 -1.13 16 24 C -0.07 -1.08 5.67 29.74 0.17 -0.91 16 25 H 0.27 15.11 8.31 -92.70 -0.77 14.34 16 26 H 0.00 -0.02 8.14 -2.38 -0.02 -0.04 16 27 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 28 H 0.06 2.54 8.14 -2.38 -0.02 2.52 16 29 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 30 H 0.06 2.24 7.65 -2.39 -0.02 2.22 16 31 H 0.06 2.21 7.68 -2.39 -0.02 2.19 16 32 H 0.13 3.69 6.33 -2.91 -0.02 3.67 16 33 H 0.15 2.66 8.05 -2.91 -0.02 2.64 16 34 H 0.13 3.32 6.49 -2.91 -0.02 3.30 16 35 H 0.34 5.70 7.20 -89.69 -0.65 5.06 16 36 H 0.35 4.01 8.97 -89.70 -0.80 3.21 16 37 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.07 1.03 8.10 -2.39 -0.02 1.01 16 39 H 0.07 0.76 8.10 -2.39 -0.02 0.74 16 40 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.09 1.02 8.12 -2.39 -0.02 1.00 16 42 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -67.11 337.18 1.95 -65.16 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -0.43 Total: 16.84 kcal Atomic # 6 Polarization: -45.97 SS G_CDS: 2.57 Total: -43.40 kcal Atomic # 7 Polarization: -70.72 SS G_CDS: -1.28 Total: -71.99 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: -0.94 Total: -13.16 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.55 kcal Total: -67.11 1.95 -65.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236306520.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.933 kcal (2) G-P(sol) polarization free energy of solvation -67.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds