Wall clock time and date at job start Mon Mar 30 2020 07:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99533 * 2 1 4 4 H 1.48506 * 109.46899 * 239.99736 * 3 2 1 5 5 H 1.48499 * 109.47410 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47172 * 119.99942 * 3 2 1 7 7 C 1.37871 * 120.00296 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00181 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99980 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.57068 * 299.99554 * 9 7 2 11 11 C 1.54520 * 109.57581 * 60.24397 * 9 7 2 12 12 C 1.45870 * 111.67513 * 197.16683 * 11 9 7 13 13 C 1.53978 * 112.67051 * 298.50382 * 12 11 9 14 14 N 1.44305 * 108.31472 * 81.40183 * 13 12 11 15 15 C 1.46897 * 111.00392 * 138.65250 * 14 13 12 16 16 C 1.50700 * 109.47026 * 66.04612 * 15 14 13 17 17 C 1.38234 * 120.00432 * 269.73061 * 16 15 14 18 18 C 1.38235 * 120.00163 * 179.78923 * 17 16 15 19 19 C 1.38235 * 120.00090 * 0.43461 * 18 17 16 20 20 C 1.38242 * 119.99723 * 359.81840 * 19 18 17 21 21 C 1.38234 * 119.99976 * 359.97294 * 20 19 18 22 22 C 1.47936 * 113.64513 * 264.60741 * 14 13 12 23 23 C 1.50538 * 109.67471 * 179.68048 * 9 7 2 24 24 H 1.08993 * 108.79476 * 269.26771 * 23 9 7 25 25 O 1.42901 * 108.78932 * 27.48479 * 23 9 7 26 26 H 0.97001 * 120.00651 * 0.02562 * 1 2 3 27 27 H 1.09008 * 109.03828 * 317.73259 * 11 9 7 28 28 H 1.09004 * 109.04215 * 76.67287 * 11 9 7 29 29 H 1.09004 * 108.84330 * 59.32379 * 12 11 9 30 30 H 1.08995 * 108.84741 * 177.67962 * 12 11 9 31 31 H 1.08998 * 109.69933 * 201.10475 * 13 12 11 32 32 H 1.08998 * 109.69656 * 321.66029 * 13 12 11 33 33 H 1.08997 * 109.47473 * 186.04608 * 15 14 13 34 34 H 1.09000 * 109.47022 * 306.05223 * 15 14 13 35 35 H 1.08005 * 119.99819 * 359.97438 * 17 16 15 36 36 H 1.08004 * 119.99802 * 180.27286 * 18 17 16 37 37 H 1.07998 * 120.00379 * 179.83446 * 19 18 17 38 38 H 1.07999 * 119.99968 * 179.97438 * 20 19 18 39 39 H 1.08002 * 119.99801 * 179.97438 * 21 20 19 40 40 H 1.09004 * 108.71549 * 162.85066 * 22 14 13 41 41 H 1.09003 * 108.71296 * 280.99049 * 22 14 13 42 42 H 0.96694 * 114.00562 * 179.97438 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6236 -2.5584 0.8898 11 6 0.3670 -2.5865 -1.2637 12 6 -0.6659 -3.6077 -1.1293 13 6 -0.0828 -5.0199 -0.9372 14 7 0.2743 -5.1779 0.4520 15 6 -0.0986 -6.5111 0.9432 16 6 0.7291 -7.5554 0.2393 17 6 0.2737 -8.1210 -0.9370 18 6 1.0350 -9.0757 -1.5849 19 6 2.2475 -9.4714 -1.0519 20 6 2.7005 -8.9095 0.1271 21 6 1.9412 -7.9517 0.7728 22 6 1.6968 -4.8871 0.7358 23 6 2.2254 -3.6467 -0.0067 24 1 2.4380 -3.9203 -1.0401 25 8 3.4409 -3.2225 0.6133 26 1 -0.4851 0.8400 -0.0004 27 1 -0.1082 -1.6202 -1.4328 28 1 0.9953 -2.8284 -2.1210 29 1 -1.2911 -3.3651 -0.2699 30 1 -1.2857 -3.6018 -2.0258 31 1 -0.8287 -5.7658 -1.2118 32 1 0.8032 -5.1395 -1.5606 33 1 0.0826 -6.5668 2.0166 34 1 -1.1552 -6.6896 0.7433 35 1 -0.6756 -7.8149 -1.3513 36 1 0.6811 -9.5144 -2.5063 37 1 2.8411 -10.2192 -1.5567 38 1 3.6477 -9.2189 0.5438 39 1 2.2949 -7.5130 1.6941 40 1 1.8144 -4.7293 1.8079 41 1 2.2953 -5.7495 0.4422 42 1 4.1236 -3.9064 0.6495 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259717668.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:33 Heat of formation + Delta-G solvation = -16.724421 kcal Electronic energy + Delta-G solvation = -22158.743132 eV Core-core repulsion = 19103.544138 eV Total energy + Delta-G solvation = -3055.198994 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.92638 -38.24063 -35.81145 -34.28042 -32.20074 -31.08851 -30.69448 -29.75285 -27.05467 -25.54744 -23.73593 -22.90106 -22.36420 -21.20124 -19.44501 -18.88354 -16.83158 -16.69219 -15.89693 -15.61201 -15.37396 -14.98904 -14.73560 -14.30779 -13.93735 -13.54052 -13.10258 -12.98847 -12.83648 -12.55632 -12.32400 -12.17374 -11.63101 -11.31582 -11.27494 -11.16955 -11.00480 -10.85481 -10.57371 -10.36235 -10.24916 -9.70773 -9.46856 -9.12129 -9.07459 -8.91885 -8.75040 -8.51598 -8.09759 -7.74603 -5.79309 -3.80801 1.28020 1.33169 3.44444 3.47768 3.52186 3.69958 4.30660 4.60797 4.77341 4.80346 4.92605 5.03469 5.20111 5.32691 5.43005 5.46412 5.56303 5.57384 5.73708 5.75190 5.80841 5.94378 5.97871 6.01874 6.03950 6.15465 6.36444 6.39729 6.42995 6.51444 6.59749 6.74408 6.86459 6.93990 7.22864 7.36176 7.44787 7.53941 7.74270 7.91799 8.17008 8.27642 8.50914 8.77075 9.26481 9.81748 11.27130 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.031082 B = 0.004800 C = 0.004464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.640608 B = 5832.539246 C = 6270.750264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.054 3.946 3 Si 0.889 3.111 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.489 4.489 8 H 0.067 0.933 9 C 0.063 3.937 10 H 0.041 0.959 11 C -0.114 4.114 12 C -0.103 4.103 13 C 0.063 3.937 14 N -0.519 5.519 15 C 0.093 3.907 16 C -0.114 4.114 17 C -0.110 4.110 18 C -0.122 4.122 19 C -0.125 4.125 20 C -0.123 4.123 21 C -0.109 4.109 22 C 0.028 3.972 23 C 0.118 3.882 24 H 0.027 0.973 25 O -0.539 6.539 26 H 0.256 0.744 27 H 0.096 0.904 28 H 0.019 0.981 29 H 0.067 0.933 30 H 0.038 0.962 31 H 0.055 0.945 32 H 0.035 0.965 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.121 0.879 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.072 0.928 41 H 0.029 0.971 42 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.956 -18.202 -1.296 18.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.717 3.283 4 H -0.206 1.206 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.528 4.528 8 H 0.085 0.915 9 C 0.045 3.955 10 H 0.059 0.941 11 C -0.152 4.152 12 C -0.141 4.141 13 C -0.065 4.065 14 N -0.243 5.243 15 C -0.034 4.034 16 C -0.116 4.116 17 C -0.129 4.129 18 C -0.141 4.141 19 C -0.144 4.144 20 C -0.141 4.141 21 C -0.127 4.127 22 C -0.099 4.099 23 C 0.060 3.940 24 H 0.045 0.955 25 O -0.339 6.339 26 H 0.066 0.934 27 H 0.115 0.885 28 H 0.038 0.962 29 H 0.086 0.914 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.054 0.946 33 H 0.098 0.902 34 H 0.100 0.900 35 H 0.139 0.861 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.090 0.910 41 H 0.047 0.953 42 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 0.202 -17.108 -0.991 17.138 hybrid contribution 1.301 -0.344 -0.598 1.472 sum 1.503 -17.452 -1.589 17.589 Atomic orbital electron populations 1.69904 1.05715 1.25997 1.52004 1.24962 0.94778 0.98792 0.95998 0.86719 0.79545 0.83578 0.78418 1.20631 1.21642 1.20498 1.21172 0.93680 0.89881 1.48032 0.91536 1.18443 0.91431 0.90678 0.94991 0.94056 1.20583 0.96804 0.99986 0.97852 1.20526 0.99448 0.93658 1.00455 1.21949 0.98656 0.98382 0.87533 1.61015 1.19849 1.23850 1.19538 1.21359 0.98098 0.84989 0.98984 1.20870 0.96581 0.97730 0.96458 1.21128 0.99984 0.96585 0.95209 1.21138 0.95126 0.97970 0.99818 1.21114 0.96520 1.00353 0.96400 1.21143 0.99771 0.97252 0.95936 1.21116 0.94549 0.96977 1.00087 1.23337 0.87246 0.97843 1.01518 1.21865 0.85941 0.94171 0.92073 0.95470 1.87003 1.24177 1.39655 1.83088 0.93385 0.88538 0.96228 0.91432 0.94308 0.92614 0.94615 0.90170 0.89970 0.86141 0.86305 0.86421 0.86284 0.86116 0.90957 0.95277 0.81444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.23 11.38 55.43 0.63 -25.60 16 2 C 0.05 1.55 5.21 -17.82 -0.09 1.45 16 3 Si 0.89 22.30 29.54 -169.99 -5.02 17.28 16 4 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.49 -14.01 8.09 -34.44 -0.28 -14.29 16 8 H 0.07 1.95 6.49 -52.49 -0.34 1.61 16 9 C 0.06 1.60 1.74 -92.20 -0.16 1.44 16 10 H 0.04 1.17 7.79 -51.93 -0.40 0.77 16 11 C -0.11 -2.72 4.58 -29.31 -0.13 -2.85 16 12 C -0.10 -2.04 5.37 -29.60 -0.16 -2.20 16 13 C 0.06 1.06 4.42 -4.70 -0.02 1.04 16 14 N -0.52 -8.71 4.18 -236.08 -0.99 -9.69 16 15 C 0.09 1.25 5.36 -4.98 -0.03 1.22 16 16 C -0.11 -1.44 4.33 -104.62 -0.45 -1.89 16 17 C -0.11 -1.30 8.75 -39.58 -0.35 -1.65 16 18 C -0.12 -1.32 10.05 -39.58 -0.40 -1.72 16 19 C -0.13 -1.31 10.05 -39.58 -0.40 -1.71 16 20 C -0.12 -1.33 10.05 -39.58 -0.40 -1.73 16 21 C -0.11 -1.30 7.69 -39.58 -0.30 -1.60 16 22 C 0.03 0.49 4.76 -2.77 -0.01 0.48 16 23 C 0.12 2.52 2.73 -27.48 -0.07 2.45 16 24 H 0.03 0.59 6.66 -51.93 -0.35 0.24 16 25 O -0.54 -11.49 11.21 -35.23 -0.40 -11.89 16 26 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 27 H 0.10 2.61 5.85 -51.92 -0.30 2.31 16 28 H 0.02 0.45 7.59 -51.93 -0.39 0.05 16 29 H 0.07 1.45 8.08 -51.93 -0.42 1.03 16 30 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.81 6.04 -51.93 -0.31 0.49 16 32 H 0.04 0.64 6.79 -51.93 -0.35 0.28 16 33 H 0.08 1.01 8.09 -51.93 -0.42 0.59 16 34 H 0.08 1.00 7.86 -51.93 -0.41 0.60 16 35 H 0.12 1.29 7.11 -52.48 -0.37 0.92 16 36 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 37 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 38 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 39 H 0.12 1.34 7.92 -52.49 -0.42 0.93 16 40 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.03 0.46 5.15 -51.93 -0.27 0.19 16 42 H 0.34 5.38 9.04 45.56 0.41 5.79 16 LS Contribution 319.98 15.07 4.82 4.82 Total: -1.00 -31.17 319.98 -9.80 -40.97 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -5.59 Total: 5.66 kcal Atomic # 6 Polarization: -18.29 SS G_CDS: -3.26 Total: -21.55 kcal Atomic # 7 Polarization: -34.94 SS G_CDS: -0.36 Total: -35.30 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: -0.40 Total: -11.89 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.17 -9.80 -40.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259717668.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.248 kcal (2) G-P(sol) polarization free energy of solvation -31.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds