Wall clock time and date at job start Mon Mar 30 2020 07:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99925 * 2 1 4 4 H 1.48502 * 109.46986 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46947 * 299.99237 * 3 2 1 6 6 H 1.48493 * 109.47657 * 59.99261 * 3 2 1 7 7 C 1.37879 * 119.99738 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99401 * 182.60168 * 7 2 1 9 9 C 1.50700 * 120.00176 * 2.59909 * 7 2 1 10 10 H 1.09001 * 109.46972 * 174.91763 * 9 7 2 11 11 N 1.46896 * 109.47198 * 54.91709 * 9 7 2 12 12 C 1.46896 * 110.99750 * 84.99757 * 11 9 7 13 13 H 1.09000 * 110.02183 * 33.61335 * 12 11 9 14 14 C 1.54270 * 110.07823 * 272.18949 * 12 11 9 15 15 C 1.54890 * 104.19886 * 264.30927 * 14 12 11 16 16 C 1.54969 * 102.77468 * 322.07746 * 15 14 12 17 17 C 1.53875 * 110.03086 * 155.00102 * 12 11 9 18 18 H 1.08995 * 110.03272 * 0.02562 * 17 12 11 19 19 C 1.53005 * 110.03345 * 238.61644 * 17 12 11 20 20 O 1.42904 * 109.47059 * 175.68796 * 19 17 12 21 21 C 1.50702 * 109.46851 * 294.91664 * 9 7 2 22 22 C 1.38238 * 120.00189 * 270.20514 * 21 9 7 23 23 C 1.38235 * 120.00035 * 179.77164 * 22 21 9 24 24 C 1.38235 * 119.99703 * 0.50454 * 23 22 21 25 25 C 1.38235 * 120.00229 * 359.75037 * 24 23 22 26 26 C 1.38229 * 119.99745 * 90.48529 * 21 9 7 27 27 H 0.97001 * 119.99834 * 0.02562 * 1 2 3 28 28 H 1.00908 * 111.00099 * 321.05088 * 11 9 7 29 29 H 1.08998 * 110.48210 * 22.98513 * 14 12 11 30 30 H 1.08994 * 110.48795 * 145.62313 * 14 12 11 31 31 H 1.08994 * 110.75703 * 80.36675 * 15 14 12 32 32 H 1.09001 * 110.75333 * 203.55762 * 15 14 12 33 33 H 1.09002 * 110.47974 * 279.23694 * 16 15 14 34 34 H 1.08997 * 110.52571 * 156.56841 * 16 15 14 35 35 H 1.08996 * 109.46584 * 55.69375 * 19 17 12 36 36 H 1.08992 * 109.46893 * 295.69261 * 19 17 12 37 37 H 0.96698 * 113.99696 * 180.02562 * 20 19 17 38 38 H 1.08001 * 119.99362 * 0.02562 * 22 21 9 39 39 H 1.07989 * 119.99802 * 180.23416 * 23 22 21 40 40 H 1.08005 * 119.99660 * 179.72446 * 24 23 22 41 41 H 1.08005 * 120.00002 * 179.97438 * 25 24 23 42 42 H 1.07997 * 120.00632 * 359.97438 * 26 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2127 6 1 1.8903 2.3966 1.2123 7 6 2.0045 -1.1941 0.0005 8 1 3.0837 -1.1945 0.0430 9 6 1.2521 -2.4985 -0.0581 10 1 1.9604 -3.3231 -0.1397 11 7 0.3632 -2.4990 -1.2275 12 6 1.0809 -2.9312 -2.4341 13 1 1.8340 -3.6751 -2.1740 14 6 1.7488 -1.7191 -3.1158 15 6 0.7337 -1.2877 -4.2032 16 6 0.1896 -2.6432 -4.7211 17 6 0.0903 -3.5186 -3.4546 18 1 -0.9230 -3.4825 -3.0547 19 6 0.4726 -4.9629 -3.7847 20 8 -0.5101 -5.5288 -4.6543 21 6 0.4326 -2.6625 1.1960 22 6 0.9782 -3.2883 2.3013 23 6 0.2280 -3.4344 3.4532 24 6 -1.0711 -2.9641 3.4962 25 6 -1.6184 -2.3430 2.3892 26 6 -0.8665 -2.1923 1.2390 27 1 -0.4850 0.8401 -0.0004 28 1 -0.0573 -1.5917 -1.3625 29 1 1.9029 -0.9143 -2.3970 30 1 2.6949 -2.0111 -3.5714 31 1 -0.0681 -0.6911 -3.7682 32 1 1.2328 -0.7382 -5.0013 33 1 0.8836 -3.0845 -5.4364 34 1 -0.7938 -2.5128 -5.1727 35 1 0.5217 -5.5450 -2.8645 36 1 1.4451 -4.9779 -4.2766 37 1 -0.3318 -6.4455 -4.9054 38 1 1.9918 -3.6593 2.2662 39 1 0.6555 -3.9199 4.3179 40 1 -1.6587 -3.0823 4.3947 41 1 -2.6336 -1.9760 2.4227 42 1 -1.2942 -1.7070 0.3741 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300722957.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:53 Heat of formation + Delta-G solvation = -34.173188 kcal Electronic energy + Delta-G solvation = -22173.918517 eV Core-core repulsion = 19117.962888 eV Total energy + Delta-G solvation = -3055.955629 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.75219 -37.89625 -36.10965 -34.43605 -31.55577 -30.00389 -29.57390 -29.50359 -26.84630 -25.76007 -23.51661 -22.41980 -21.26520 -20.15600 -19.61313 -19.00026 -16.99842 -16.59264 -15.79300 -15.17952 -14.95205 -14.72807 -14.13058 -13.87839 -13.73672 -13.36534 -12.93073 -12.69134 -12.33016 -12.13674 -11.93730 -11.66107 -11.43960 -11.16549 -11.02469 -10.74966 -10.62610 -10.48314 -10.32360 -10.23815 -10.09706 -10.01655 -9.78884 -9.63275 -9.60810 -9.49480 -8.65585 -7.76268 -7.39692 -7.02575 -6.06069 -4.31223 2.56109 2.67814 3.17327 3.27605 3.30049 4.26802 4.46794 4.99800 5.11987 5.17534 5.26732 5.35989 5.63859 5.73088 5.80821 5.86806 5.97865 6.00936 6.10168 6.13237 6.21955 6.28173 6.41610 6.47411 6.49919 6.54303 6.57841 6.77251 6.79968 6.89844 6.94537 6.98592 7.19177 7.23382 7.35066 7.57439 7.65444 7.82062 7.82693 7.99300 8.09415 8.29296 8.43972 8.84330 9.11461 9.39209 10.78541 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.013551 B = 0.007735 C = 0.005529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.764737 B = 3618.877066 C = 5062.882829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.073 3.927 3 Si 0.886 3.114 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.533 4.533 8 H 0.057 0.943 9 C 0.238 3.762 10 H 0.034 0.966 11 N -0.681 5.681 12 C 0.105 3.895 13 H 0.059 0.941 14 C -0.155 4.155 15 C -0.125 4.125 16 C -0.110 4.110 17 C -0.085 4.085 18 H 0.086 0.914 19 C 0.086 3.914 20 O -0.575 6.575 21 C -0.019 4.019 22 C -0.136 4.136 23 C -0.144 4.144 24 C -0.153 4.153 25 C -0.148 4.148 26 C -0.050 4.050 27 H 0.266 0.734 28 H 0.369 0.631 29 H 0.095 0.905 30 H 0.047 0.953 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.045 0.955 36 H 0.038 0.962 37 H 0.370 0.630 38 H 0.102 0.898 39 H 0.099 0.901 40 H 0.097 0.903 41 H 0.100 0.900 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.062 -6.022 -4.576 7.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.130 4.130 3 Si 0.714 3.286 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.572 4.572 8 H 0.076 0.924 9 C 0.130 3.870 10 H 0.052 0.948 11 N -0.317 5.317 12 C -0.007 4.007 13 H 0.078 0.922 14 C -0.194 4.194 15 C -0.162 4.162 16 C -0.148 4.148 17 C -0.104 4.104 18 H 0.105 0.895 19 C 0.008 3.992 20 O -0.379 6.379 21 C -0.020 4.020 22 C -0.155 4.155 23 C -0.163 4.163 24 C -0.172 4.172 25 C -0.167 4.167 26 C -0.069 4.069 27 H 0.077 0.923 28 H 0.195 0.805 29 H 0.114 0.886 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.057 0.943 37 H 0.216 0.784 38 H 0.120 0.880 39 H 0.117 0.883 40 H 0.116 0.884 41 H 0.118 0.882 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -0.623 -5.890 -4.370 7.361 hybrid contribution 1.406 1.317 0.064 1.928 sum 0.784 -4.572 -4.307 6.330 Atomic orbital electron populations 1.69614 1.05524 1.26729 1.49533 1.24952 0.94906 0.98973 0.94152 0.86622 0.80297 0.83878 0.77825 1.19820 1.20770 1.20872 1.21710 0.93479 0.91024 1.51011 0.92426 1.18146 0.88787 0.94528 0.85584 0.94816 1.60953 1.32005 1.37232 1.01528 1.21823 0.92966 0.95122 0.90799 0.92246 1.23191 0.96933 1.00764 0.98476 1.22493 0.99111 0.96633 0.97989 1.22331 1.00126 0.95523 0.96780 1.21878 1.01808 0.91533 0.95192 0.89548 1.22347 0.89886 0.94894 0.92024 1.86511 1.51105 1.31249 1.69056 1.20198 0.93736 0.92090 0.95962 1.20832 0.98896 1.01865 0.93865 1.20731 0.95034 1.02992 0.97510 1.20753 0.95832 1.02569 0.97997 1.21094 0.99329 1.01529 0.94706 1.21323 0.93574 0.94200 0.97776 0.92337 0.80519 0.88638 0.93373 0.91646 0.92877 0.92594 0.92433 0.93690 0.94347 0.78421 0.87997 0.88250 0.88433 0.88203 0.83819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -21.60 7.97 55.43 0.44 -21.16 16 2 C 0.07 1.80 4.47 -17.82 -0.08 1.72 16 3 Si 0.89 19.95 29.54 -169.99 -5.02 14.92 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.53 -13.16 7.01 -34.44 -0.24 -13.41 16 8 H 0.06 1.46 7.81 -52.48 -0.41 1.05 16 9 C 0.24 5.50 2.50 -70.02 -0.18 5.32 16 10 H 0.03 0.77 7.38 -51.93 -0.38 0.39 16 11 N -0.68 -14.70 5.08 -101.01 -0.51 -15.21 16 12 C 0.10 1.97 2.88 -66.59 -0.19 1.78 16 13 H 0.06 1.11 6.96 -51.93 -0.36 0.75 16 14 C -0.15 -2.87 6.09 -25.07 -0.15 -3.02 16 15 C -0.12 -2.09 6.91 -24.70 -0.17 -2.27 16 16 C -0.11 -1.73 6.22 -25.02 -0.16 -1.89 16 17 C -0.08 -1.44 2.98 -89.49 -0.27 -1.70 16 18 H 0.09 1.64 7.92 -51.93 -0.41 1.23 16 19 C 0.09 1.25 6.09 37.16 0.23 1.48 16 20 O -0.57 -7.96 13.50 -35.23 -0.48 -8.43 16 21 C -0.02 -0.43 4.79 -104.62 -0.50 -0.93 16 22 C -0.14 -2.92 9.70 -39.58 -0.38 -3.30 16 23 C -0.14 -2.83 10.05 -39.58 -0.40 -3.23 16 24 C -0.15 -2.98 10.05 -39.58 -0.40 -3.38 16 25 C -0.15 -3.09 10.05 -39.58 -0.40 -3.48 16 26 C -0.05 -1.15 7.65 -39.58 -0.30 -1.45 16 27 H 0.27 6.42 8.31 -40.82 -0.34 6.08 16 28 H 0.37 8.54 5.24 -39.29 -0.21 8.34 16 29 H 0.10 2.06 5.62 -51.93 -0.29 1.77 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.82 7.77 -51.93 -0.40 0.42 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.04 0.51 8.02 -51.93 -0.42 0.09 16 37 H 0.37 3.25 9.12 45.56 0.42 3.66 16 38 H 0.10 2.03 8.06 -52.49 -0.42 1.61 16 39 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 40 H 0.10 1.62 8.06 -52.48 -0.42 1.20 16 41 H 0.10 1.86 8.06 -52.48 -0.42 1.44 16 42 H 0.14 3.47 5.59 -52.49 -0.29 3.17 16 LS Contribution 327.52 15.07 4.94 4.94 Total: -1.00 -25.96 327.52 -9.92 -35.89 By element: Atomic # 1 Polarization: 22.53 SS G_CDS: -5.70 Total: 16.83 kcal Atomic # 6 Polarization: -24.18 SS G_CDS: -3.59 Total: -27.77 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: -0.07 Total: -36.37 kcal Atomic # 8 Polarization: -7.96 SS G_CDS: -0.48 Total: -8.43 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -25.96 -9.92 -35.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300722957.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.713 kcal (2) G-P(sol) polarization free energy of solvation -25.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds