Wall clock time and date at job start Mon Mar 30 2020 07:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99925 * 2 1 4 4 H 1.48502 * 109.46986 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46947 * 299.99237 * 3 2 1 6 6 H 1.48493 * 109.47657 * 59.99261 * 3 2 1 7 7 C 1.37879 * 119.99738 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99401 * 182.60168 * 7 2 1 9 9 C 1.50700 * 120.00176 * 2.59909 * 7 2 1 10 10 H 1.09001 * 109.46972 * 174.91763 * 9 7 2 11 11 N 1.46896 * 109.47198 * 54.91709 * 9 7 2 12 12 C 1.46896 * 110.99750 * 84.99757 * 11 9 7 13 13 H 1.09000 * 110.02183 * 33.61335 * 12 11 9 14 14 C 1.54270 * 110.07823 * 272.18949 * 12 11 9 15 15 C 1.54890 * 104.19886 * 264.30927 * 14 12 11 16 16 C 1.54969 * 102.77468 * 322.07746 * 15 14 12 17 17 C 1.53875 * 110.03086 * 155.00102 * 12 11 9 18 18 H 1.08995 * 110.03272 * 0.02562 * 17 12 11 19 19 C 1.53005 * 110.03345 * 238.61644 * 17 12 11 20 20 O 1.42904 * 109.47059 * 175.68796 * 19 17 12 21 21 C 1.50702 * 109.46851 * 294.91664 * 9 7 2 22 22 C 1.38238 * 120.00189 * 270.20514 * 21 9 7 23 23 C 1.38235 * 120.00035 * 179.77164 * 22 21 9 24 24 C 1.38235 * 119.99703 * 0.50454 * 23 22 21 25 25 C 1.38235 * 120.00229 * 359.75037 * 24 23 22 26 26 C 1.38229 * 119.99745 * 90.48529 * 21 9 7 27 27 H 0.97001 * 119.99834 * 0.02562 * 1 2 3 28 28 H 1.00908 * 111.00099 * 321.05088 * 11 9 7 29 29 H 1.08998 * 110.48210 * 22.98513 * 14 12 11 30 30 H 1.08994 * 110.48795 * 145.62313 * 14 12 11 31 31 H 1.08994 * 110.75703 * 80.36675 * 15 14 12 32 32 H 1.09001 * 110.75333 * 203.55762 * 15 14 12 33 33 H 1.09002 * 110.47974 * 279.23694 * 16 15 14 34 34 H 1.08997 * 110.52571 * 156.56841 * 16 15 14 35 35 H 1.08996 * 109.46584 * 55.69375 * 19 17 12 36 36 H 1.08992 * 109.46893 * 295.69261 * 19 17 12 37 37 H 0.96698 * 113.99696 * 180.02562 * 20 19 17 38 38 H 1.08001 * 119.99362 * 0.02562 * 22 21 9 39 39 H 1.07989 * 119.99802 * 180.23416 * 23 22 21 40 40 H 1.08005 * 119.99660 * 179.72446 * 24 23 22 41 41 H 1.08005 * 120.00002 * 179.97438 * 25 24 23 42 42 H 1.07997 * 120.00632 * 359.97438 * 26 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2127 6 1 1.8903 2.3966 1.2123 7 6 2.0045 -1.1941 0.0005 8 1 3.0837 -1.1945 0.0430 9 6 1.2521 -2.4985 -0.0581 10 1 1.9604 -3.3231 -0.1397 11 7 0.3632 -2.4990 -1.2275 12 6 1.0809 -2.9312 -2.4341 13 1 1.8340 -3.6751 -2.1740 14 6 1.7488 -1.7191 -3.1158 15 6 0.7337 -1.2877 -4.2032 16 6 0.1896 -2.6432 -4.7211 17 6 0.0903 -3.5186 -3.4546 18 1 -0.9230 -3.4825 -3.0547 19 6 0.4726 -4.9629 -3.7847 20 8 -0.5101 -5.5288 -4.6543 21 6 0.4326 -2.6625 1.1960 22 6 0.9782 -3.2883 2.3013 23 6 0.2280 -3.4344 3.4532 24 6 -1.0711 -2.9641 3.4962 25 6 -1.6184 -2.3430 2.3892 26 6 -0.8665 -2.1923 1.2390 27 1 -0.4850 0.8401 -0.0004 28 1 -0.0573 -1.5917 -1.3625 29 1 1.9029 -0.9143 -2.3970 30 1 2.6949 -2.0111 -3.5714 31 1 -0.0681 -0.6911 -3.7682 32 1 1.2328 -0.7382 -5.0013 33 1 0.8836 -3.0845 -5.4364 34 1 -0.7938 -2.5128 -5.1727 35 1 0.5217 -5.5450 -2.8645 36 1 1.4451 -4.9779 -4.2766 37 1 -0.3318 -6.4455 -4.9054 38 1 1.9918 -3.6593 2.2662 39 1 0.6555 -3.9199 4.3179 40 1 -1.6587 -3.0823 4.3947 41 1 -2.6336 -1.9760 2.4227 42 1 -1.2942 -1.7070 0.3741 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300722957.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:52 Heat of formation + Delta-G solvation = -48.942715 kcal Electronic energy + Delta-G solvation = -22174.558972 eV Core-core repulsion = 19117.962888 eV Total energy + Delta-G solvation = -3056.596084 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.27464 -39.40791 -37.34820 -36.04367 -33.35549 -31.60547 -31.17820 -30.82961 -28.51907 -27.36493 -24.94113 -24.05824 -22.87996 -21.69065 -21.15233 -20.42554 -18.44737 -18.15469 -17.34868 -16.83627 -16.38310 -16.21080 -15.58045 -15.46700 -15.24430 -14.96266 -14.47767 -14.12789 -13.91855 -13.72572 -13.37813 -13.26050 -13.16164 -12.89673 -12.68976 -12.41173 -12.18542 -11.95005 -11.78402 -11.75975 -11.64902 -11.43592 -11.34571 -11.29059 -11.17476 -10.74712 -10.50681 -9.40225 -9.08093 -8.74484 -7.90942 -6.23540 0.90937 1.05450 1.34901 1.41428 1.47322 2.39749 3.12286 3.34927 3.42844 3.78446 3.93184 4.05997 4.24318 4.40434 4.41674 4.45752 4.54753 4.62788 4.67393 4.69988 4.82182 4.84963 4.88926 4.98234 5.01270 5.13413 5.16011 5.19501 5.25570 5.30360 5.41342 5.55618 5.60777 5.66482 5.69971 5.75998 5.94858 6.12977 6.13927 6.41756 6.57327 6.65378 6.99361 7.06269 7.29736 7.49442 8.88000 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.013551 B = 0.007735 C = 0.005529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.764737 B = 3618.877066 C = 5062.882829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.046 3.954 3 Si 0.930 3.070 4 H -0.277 1.277 5 H -0.278 1.278 6 H -0.288 1.288 7 C -0.543 4.543 8 H 0.043 0.957 9 C 0.241 3.759 10 H 0.026 0.974 11 N -0.683 5.683 12 C 0.101 3.899 13 H 0.058 0.942 14 C -0.153 4.153 15 C -0.120 4.120 16 C -0.100 4.100 17 C -0.082 4.082 18 H 0.060 0.940 19 C 0.093 3.907 20 O -0.588 6.588 21 C -0.045 4.045 22 C -0.152 4.152 23 C -0.142 4.142 24 C -0.150 4.150 25 C -0.157 4.157 26 C -0.069 4.069 27 H 0.264 0.736 28 H 0.359 0.641 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.045 0.955 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.060 0.940 35 H 0.041 0.959 36 H 0.058 0.942 37 H 0.394 0.606 38 H 0.110 0.890 39 H 0.133 0.867 40 H 0.133 0.867 41 H 0.118 0.882 42 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.087 -6.855 -4.548 8.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.156 4.156 3 Si 0.758 3.242 4 H -0.201 1.201 5 H -0.204 1.204 6 H -0.215 1.215 7 C -0.582 4.582 8 H 0.061 0.939 9 C 0.131 3.869 10 H 0.044 0.956 11 N -0.318 5.318 12 C -0.010 4.010 13 H 0.076 0.924 14 C -0.192 4.192 15 C -0.158 4.158 16 C -0.138 4.138 17 C -0.101 4.101 18 H 0.078 0.922 19 C 0.016 3.984 20 O -0.396 6.396 21 C -0.046 4.046 22 C -0.170 4.170 23 C -0.160 4.160 24 C -0.168 4.168 25 C -0.175 4.175 26 C -0.088 4.088 27 H 0.074 0.926 28 H 0.183 0.817 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.059 0.941 36 H 0.076 0.924 37 H 0.243 0.757 38 H 0.128 0.872 39 H 0.151 0.849 40 H 0.151 0.849 41 H 0.136 0.864 42 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.595 -6.753 -4.356 8.058 hybrid contribution 1.379 1.520 0.089 2.054 sum 0.784 -5.233 -4.267 6.798 Atomic orbital electron populations 1.69738 1.05913 1.26752 1.49547 1.25337 0.95465 1.00596 0.94196 0.85942 0.79238 0.81601 0.77426 1.20144 1.20408 1.21485 1.21749 0.92794 0.92185 1.51464 0.93917 1.18068 0.88831 0.93394 0.86558 0.95628 1.60977 1.32115 1.36408 1.02259 1.21916 0.93388 0.95278 0.90412 0.92415 1.23089 0.98190 0.99562 0.98354 1.22444 0.98149 0.97316 0.97859 1.22270 1.00708 0.94415 0.96371 1.21763 0.99631 0.93698 0.95054 0.92166 1.22166 0.90732 0.93129 0.92415 1.86445 1.51112 1.33312 1.68728 1.20325 0.94183 0.93533 0.96536 1.21070 0.99656 1.02077 0.94246 1.21127 0.94989 1.02079 0.97761 1.21156 0.96042 1.00998 0.98607 1.21363 1.00122 1.01533 0.94497 1.21221 0.94009 0.95342 0.98237 0.92608 0.81683 0.91848 0.91814 0.93633 0.90879 0.90683 0.92139 0.94079 0.92386 0.75708 0.87240 0.84877 0.84889 0.86405 0.85798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -44.58 7.97 21.45 0.17 -44.41 16 2 C 0.05 2.31 4.47 84.65 0.38 2.69 16 3 Si 0.93 41.55 29.54 68.60 2.03 43.58 16 4 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 5 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 6 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 7 C -0.54 -27.57 7.01 25.60 0.18 -27.39 16 8 H 0.04 2.23 7.81 -2.91 -0.02 2.21 16 9 C 0.24 11.45 2.50 43.42 0.11 11.56 16 10 H 0.03 1.21 7.38 -2.39 -0.02 1.20 16 11 N -0.68 -30.49 5.08 -473.47 -2.41 -32.90 16 12 C 0.10 3.86 2.88 45.64 0.13 3.99 16 13 H 0.06 2.18 6.96 -2.39 -0.02 2.17 16 14 C -0.15 -5.69 6.09 31.67 0.19 -5.50 16 15 C -0.12 -3.96 6.91 31.91 0.22 -3.74 16 16 C -0.10 -3.00 6.22 31.70 0.20 -2.81 16 17 C -0.08 -2.75 2.98 -10.06 -0.03 -2.78 16 18 H 0.06 2.33 7.92 -2.39 -0.02 2.31 16 19 C 0.09 2.56 6.09 71.98 0.44 3.00 16 20 O -0.59 -15.04 13.50 -148.98 -2.01 -17.06 16 21 C -0.04 -2.10 4.79 -19.87 -0.10 -2.20 16 22 C -0.15 -6.44 9.70 22.27 0.22 -6.22 16 23 C -0.14 -5.22 10.05 22.27 0.22 -4.99 16 24 C -0.15 -5.44 10.05 22.27 0.22 -5.22 16 25 C -0.16 -6.37 10.05 22.27 0.22 -6.15 16 26 C -0.07 -3.23 7.65 22.27 0.17 -3.06 16 27 H 0.26 13.01 8.31 -92.71 -0.77 12.24 16 28 H 0.36 17.32 5.24 -89.69 -0.47 16.85 16 29 H 0.06 2.80 5.62 -2.39 -0.01 2.78 16 30 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.04 1.66 8.14 -2.39 -0.02 1.65 16 32 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.07 1.99 7.77 -2.39 -0.02 1.97 16 34 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.06 1.38 8.02 -2.39 -0.02 1.36 16 37 H 0.39 5.89 9.12 -74.06 -0.68 5.22 16 38 H 0.11 4.33 8.06 -2.91 -0.02 4.31 16 39 H 0.13 3.96 8.06 -2.92 -0.02 3.93 16 40 H 0.13 3.86 8.06 -2.91 -0.02 3.84 16 41 H 0.12 4.23 8.06 -2.91 -0.02 4.21 16 42 H 0.12 6.20 5.59 -2.91 -0.02 6.18 16 Total: -1.00 -56.03 327.52 0.43 -55.60 By element: Atomic # 1 Polarization: 44.11 SS G_CDS: -0.13 Total: 43.98 kcal Atomic # 6 Polarization: -51.58 SS G_CDS: 2.78 Total: -48.80 kcal Atomic # 7 Polarization: -75.07 SS G_CDS: -2.24 Total: -77.31 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -2.01 Total: -17.06 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.58 kcal Total: -56.03 0.43 -55.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300722957.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.662 kcal (2) G-P(sol) polarization free energy of solvation -56.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds