Wall clock time and date at job start Mon Mar 30 2020 07:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00196 * 2 1 4 4 H 1.48501 * 109.46861 * 274.98944 * 3 2 1 5 5 H 1.48502 * 109.47198 * 34.98363 * 3 2 1 6 6 H 1.48495 * 109.47388 * 154.98552 * 3 2 1 7 7 C 1.37877 * 119.99837 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99999 * 185.12967 * 7 2 1 9 9 C 1.50704 * 119.99749 * 5.14386 * 7 2 1 10 10 H 1.08997 * 109.46751 * 325.36577 * 9 7 2 11 11 C 1.50704 * 109.46744 * 205.36950 * 9 7 2 12 12 C 1.38238 * 120.00059 * 296.98471 * 11 9 7 13 13 C 1.38230 * 119.99611 * 179.76644 * 12 11 9 14 14 C 1.38238 * 120.00544 * 0.50408 * 13 12 11 15 15 C 1.38234 * 119.99504 * 359.74664 * 14 13 12 16 16 C 1.38233 * 119.99899 * 117.25390 * 11 9 7 17 17 N 1.46892 * 109.47457 * 85.37164 * 9 7 2 18 18 C 1.48541 * 111.00195 * 32.39903 * 17 9 7 19 19 C 1.54936 * 103.22712 * 159.72171 * 18 17 9 20 20 C 1.54592 * 102.92221 * 322.58682 * 19 18 17 21 21 C 1.47903 * 111.00165 * 149.79246 * 17 9 7 22 22 H 1.08999 * 109.92047 * 333.50981 * 21 17 9 23 23 C 1.52999 * 109.91390 * 94.80264 * 21 17 9 24 24 C 1.52997 * 109.47068 * 294.71687 * 23 21 17 25 25 O 1.42904 * 109.46919 * 185.17609 * 24 23 21 26 26 H 0.97007 * 119.99622 * 0.02562 * 1 2 3 27 27 H 1.08002 * 119.99732 * 359.97438 * 12 11 9 28 28 H 1.08010 * 119.99766 * 180.23081 * 13 12 11 29 29 H 1.07999 * 120.00021 * 179.72622 * 14 13 12 30 30 H 1.08001 * 119.99571 * 179.97438 * 15 14 13 31 31 H 1.07996 * 120.00360 * 0.02562 * 16 11 9 32 32 H 1.08997 * 110.66689 * 41.28290 * 18 17 9 33 33 H 1.08997 * 110.80548 * 278.22259 * 18 17 9 34 34 H 1.08998 * 110.72249 * 204.22628 * 19 18 17 35 35 H 1.09001 * 110.72449 * 80.94170 * 19 18 17 36 36 H 1.09009 * 110.30752 * 263.04129 * 20 19 18 37 37 H 1.08994 * 110.39609 * 140.92253 * 20 19 18 38 38 H 1.08999 * 109.47649 * 54.72115 * 23 21 17 39 39 H 1.09009 * 109.46922 * 174.71497 * 23 21 17 40 40 H 1.09000 * 109.47528 * 305.17002 * 24 23 21 41 41 H 1.08997 * 109.47439 * 65.17720 * 24 23 21 42 42 H 0.96701 * 114.00094 * 184.99574 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3912 2.1072 -1.3948 5 1 1.5033 2.6200 0.8027 6 1 3.5954 1.4120 0.5920 7 6 2.0045 -1.1941 0.0005 8 1 3.0812 -1.1959 0.0842 9 6 1.2554 -2.4966 -0.1159 10 1 0.2988 -2.4128 0.3997 11 6 2.0681 -3.6010 0.5095 12 6 3.3006 -3.9365 -0.0190 13 6 4.0481 -4.9462 0.5576 14 6 3.5586 -5.6275 1.6563 15 6 2.3238 -5.2955 2.1816 16 6 1.5785 -4.2822 1.6082 17 7 1.0226 -2.8026 -1.5336 18 6 2.1346 -2.2948 -2.3774 19 6 2.0042 -3.1299 -3.6759 20 6 1.5885 -4.5232 -3.1506 21 6 0.9792 -4.2635 -1.7604 22 1 1.5648 -4.7754 -0.9968 23 6 -0.4699 -4.7532 -1.7267 24 6 -1.0424 -4.5560 -0.3216 25 8 -2.3528 -5.1224 -0.2574 26 1 -0.4850 0.8401 -0.0004 27 1 3.6810 -3.4074 -0.8803 28 1 5.0128 -5.2059 0.1470 29 1 4.1407 -6.4194 2.1041 30 1 1.9411 -5.8280 3.0397 31 1 0.6135 -4.0233 2.0181 32 1 3.0961 -2.4773 -1.8975 33 1 2.0069 -1.2331 -2.5884 34 1 2.9598 -3.1837 -4.1975 35 1 1.2322 -2.7163 -4.3247 36 1 2.4608 -5.1714 -3.0662 37 1 0.8467 -4.9723 -3.8109 38 1 -1.0624 -4.1847 -2.4435 39 1 -0.5020 -5.8113 -1.9870 40 1 -0.3976 -5.0489 0.4059 41 1 -1.0956 -3.4908 -0.0972 42 1 -2.8076 -4.9674 0.5818 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310637607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:20 Heat of formation + Delta-G solvation = -12.824608 kcal Electronic energy + Delta-G solvation = -22889.341783 eV Core-core repulsion = 19834.311897 eV Total energy + Delta-G solvation = -3055.029885 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.84902 -37.46396 -36.20114 -33.63981 -31.73632 -31.32768 -30.27304 -29.14593 -26.50712 -26.09525 -23.59193 -22.05686 -21.73865 -20.50365 -20.07474 -18.93228 -16.77454 -16.42013 -16.11566 -15.56055 -14.81979 -14.75579 -14.36437 -14.19522 -13.88997 -13.31407 -13.18712 -12.84739 -12.71031 -12.28166 -12.01790 -11.76362 -11.37102 -11.29065 -11.09700 -10.95486 -10.75996 -10.72919 -10.50968 -10.44714 -10.13304 -10.06844 -9.78285 -9.69322 -9.36396 -9.08279 -8.57373 -8.30625 -7.83184 -7.06373 -6.12734 -4.19398 1.98618 2.03715 3.23605 3.32057 3.34656 4.30596 4.44626 4.72908 4.98939 5.31235 5.43397 5.44388 5.45629 5.49574 5.59197 5.68224 5.78141 5.83726 5.95445 6.08728 6.11208 6.18378 6.18913 6.23153 6.37102 6.46268 6.48456 6.55781 6.62130 6.68470 6.73097 6.86933 6.91345 7.03454 7.06700 7.16612 7.21744 7.58535 7.65443 7.72643 7.89823 8.08597 8.45421 8.51112 8.90707 9.45598 10.94103 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.012867 B = 0.008474 C = 0.007526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2175.511881 B = 3303.560125 C = 3719.676534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.082 3.918 3 Si 0.887 3.113 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.057 0.943 9 C 0.224 3.776 10 H 0.078 0.922 11 C -0.051 4.051 12 C -0.126 4.126 13 C -0.126 4.126 14 C -0.149 4.149 15 C -0.123 4.123 16 C -0.130 4.130 17 N -0.489 5.489 18 C 0.062 3.938 19 C -0.132 4.132 20 C -0.121 4.121 21 C 0.043 3.957 22 H 0.064 0.936 23 C -0.092 4.092 24 C 0.068 3.932 25 O -0.585 6.585 26 H 0.263 0.737 27 H 0.124 0.876 28 H 0.109 0.891 29 H 0.108 0.892 30 H 0.110 0.890 31 H 0.114 0.886 32 H 0.043 0.957 33 H 0.075 0.925 34 H 0.056 0.944 35 H 0.064 0.936 36 H 0.055 0.945 37 H 0.060 0.940 38 H 0.067 0.933 39 H 0.052 0.948 40 H 0.040 0.960 41 H 0.069 0.931 42 H 0.372 0.628 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.845 -8.664 -0.834 9.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.124 4.124 3 Si 0.714 3.286 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.559 4.559 8 H 0.075 0.925 9 C 0.118 3.882 10 H 0.096 0.904 11 C -0.053 4.053 12 C -0.144 4.144 13 C -0.144 4.144 14 C -0.167 4.167 15 C -0.141 4.141 16 C -0.148 4.148 17 N -0.212 5.212 18 C -0.065 4.065 19 C -0.170 4.170 20 C -0.159 4.159 21 C -0.066 4.066 22 H 0.082 0.918 23 C -0.130 4.130 24 C -0.009 4.009 25 O -0.390 6.390 26 H 0.073 0.927 27 H 0.142 0.858 28 H 0.127 0.873 29 H 0.126 0.874 30 H 0.128 0.872 31 H 0.132 0.868 32 H 0.061 0.939 33 H 0.094 0.906 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.071 0.929 40 H 0.058 0.942 41 H 0.087 0.913 42 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 2.318 -8.477 -1.582 8.929 hybrid contribution 1.171 0.733 0.941 1.671 sum 3.489 -7.744 -0.642 8.518 Atomic orbital electron populations 1.69954 1.05906 1.26802 1.47320 1.24939 0.94709 0.98997 0.93777 0.86662 0.80093 0.83617 0.78182 1.20456 1.21145 1.19830 1.20950 0.92994 0.89541 1.52457 0.92507 1.18893 0.95398 0.89413 0.84467 0.90417 1.21214 0.94992 0.95093 0.93996 1.21366 0.94892 0.97461 1.00660 1.21047 0.99313 0.97257 0.96832 1.20869 0.96717 1.01082 0.98048 1.21011 0.95193 0.98201 0.99708 1.21083 0.99985 0.96537 0.97243 1.65491 1.41052 1.06022 1.08660 1.22943 0.93738 0.99231 0.90606 1.22594 1.00035 0.95674 0.98719 1.22369 0.99580 0.97366 0.96628 1.22689 0.94675 0.92908 0.96344 0.91810 1.21414 0.95884 0.99514 0.96207 1.22556 0.82149 0.98474 0.97739 1.86396 1.31071 1.80359 1.41149 0.92738 0.85793 0.87315 0.87387 0.87236 0.86806 0.93884 0.90615 0.92541 0.91691 0.92639 0.92109 0.91388 0.92885 0.94158 0.91265 0.78274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.52 12.92 55.43 0.72 -22.80 16 2 C 0.08 2.13 5.45 -17.82 -0.10 2.04 16 3 Si 0.89 20.33 29.54 -169.99 -5.02 15.31 16 4 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.52 -13.14 6.07 -34.44 -0.21 -13.35 16 8 H 0.06 1.46 7.52 -52.49 -0.39 1.06 16 9 C 0.22 5.11 1.82 -70.02 -0.13 4.98 16 10 H 0.08 1.99 5.43 -51.93 -0.28 1.70 16 11 C -0.05 -1.03 2.71 -104.62 -0.28 -1.31 16 12 C -0.13 -2.37 7.11 -39.58 -0.28 -2.65 16 13 C -0.13 -2.09 10.05 -39.58 -0.40 -2.48 16 14 C -0.15 -2.33 10.05 -39.58 -0.40 -2.73 16 15 C -0.12 -2.00 10.05 -39.58 -0.40 -2.40 16 16 C -0.13 -2.41 7.83 -39.58 -0.31 -2.72 16 17 N -0.49 -10.39 4.96 -217.43 -1.08 -11.47 16 18 C 0.06 1.25 4.95 -1.89 -0.01 1.24 16 19 C -0.13 -2.19 7.06 -24.87 -0.18 -2.37 16 20 C -0.12 -1.96 6.57 -25.38 -0.17 -2.13 16 21 C 0.04 0.79 1.99 -66.64 -0.13 0.66 16 22 H 0.06 1.23 4.35 -51.93 -0.23 1.01 16 23 C -0.09 -1.68 5.05 -26.73 -0.13 -1.82 16 24 C 0.07 1.24 6.03 37.16 0.22 1.46 16 25 O -0.58 -9.97 13.66 -35.23 -0.48 -10.45 16 26 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 27 H 0.12 2.37 4.93 -52.49 -0.26 2.11 16 28 H 0.11 1.52 8.06 -52.48 -0.42 1.10 16 29 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 30 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 31 H 0.11 2.06 7.61 -52.49 -0.40 1.66 16 32 H 0.04 0.87 4.44 -51.93 -0.23 0.64 16 33 H 0.08 1.68 7.86 -51.93 -0.41 1.27 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.05 0.83 8.14 -51.92 -0.42 0.41 16 37 H 0.06 0.92 7.69 -51.93 -0.40 0.52 16 38 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 39 H 0.05 0.90 8.14 -51.92 -0.42 0.48 16 40 H 0.04 0.72 5.87 -51.93 -0.30 0.41 16 41 H 0.07 1.44 5.97 -51.93 -0.31 1.13 16 42 H 0.37 4.65 9.12 45.56 0.42 5.07 16 LS Contribution 319.17 15.07 4.81 4.81 Total: -1.00 -27.81 319.17 -9.27 -37.07 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: -5.32 Total: 11.13 kcal Atomic # 6 Polarization: -20.70 SS G_CDS: -2.90 Total: -23.60 kcal Atomic # 7 Polarization: -33.91 SS G_CDS: -0.36 Total: -34.27 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: -0.48 Total: -10.45 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -27.81 -9.27 -37.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310637607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.250 kcal (2) G-P(sol) polarization free energy of solvation -27.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds