Wall clock time and date at job start Mon Mar 30 2020 07:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 120.00059 * 2 1 4 4 H 1.48498 * 109.47670 * 240.00090 * 3 2 1 5 5 H 1.48500 * 109.47161 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46770 * 119.99947 * 3 2 1 7 7 C 1.38812 * 119.99923 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00168 * 157.94542 * 7 2 1 9 9 N 1.36935 * 120.00029 * 337.94615 * 7 2 1 10 10 C 1.46496 * 120.00168 * 324.92336 * 9 7 2 11 11 C 1.53003 * 109.46867 * 270.00096 * 10 9 7 12 12 C 1.53008 * 109.47212 * 179.97438 * 11 10 9 13 13 C 1.52995 * 109.47453 * 179.97438 * 12 11 10 14 14 O 1.42896 * 109.47289 * 179.97438 * 13 12 11 15 15 C 1.35900 * 116.99908 * 179.97438 * 14 13 12 16 16 C 1.38725 * 120.05717 * 359.72574 * 15 14 13 17 17 C 1.38147 * 119.94383 * 179.74123 * 16 15 14 18 18 C 1.38259 * 120.05594 * 0.51108 * 17 16 15 19 19 C 1.38271 * 120.11246 * 359.76631 * 18 17 16 20 20 C 1.38149 * 120.05225 * 359.97438 * 19 18 17 21 21 C 1.46503 * 120.00127 * 144.92213 * 9 7 2 22 22 C 1.53004 * 117.49740 * 3.23544 * 21 9 7 23 23 C 1.52995 * 117.49870 * 294.57853 * 21 9 7 24 24 H 0.96995 * 119.99672 * 355.76210 * 1 2 3 25 25 H 1.08995 * 109.47211 * 29.99607 * 10 9 7 26 26 H 1.09000 * 109.47465 * 150.00134 * 10 9 7 27 27 H 1.09001 * 109.46980 * 299.99328 * 11 10 9 28 28 H 1.08994 * 109.47445 * 59.99804 * 11 10 9 29 29 H 1.09005 * 109.46810 * 300.00102 * 12 11 10 30 30 H 1.09000 * 109.47049 * 59.99220 * 12 11 10 31 31 H 1.09000 * 109.47054 * 300.00316 * 13 12 11 32 32 H 1.09000 * 109.46895 * 59.99854 * 13 12 11 33 33 H 1.08000 * 120.02978 * 359.97438 * 16 15 14 34 34 H 1.07999 * 119.97561 * 180.27484 * 17 16 15 35 35 H 1.08003 * 119.94872 * 179.74392 * 18 17 16 36 36 H 1.07998 * 119.97452 * 180.02562 * 19 18 17 37 37 H 1.07996 * 120.02048 * 179.97438 * 20 19 18 38 38 H 1.08999 * 115.55313 * 148.90890 * 21 9 7 39 39 H 1.09001 * 117.49599 * 0.02562 * 22 21 9 40 40 H 1.09000 * 117.49619 * 145.02077 * 22 21 9 41 41 H 1.09002 * 117.50220 * 214.97803 * 23 21 9 42 42 H 1.09001 * 117.50083 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6965 -1.2124 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0309 -1.2363 -0.3517 9 7 1.4007 -2.3449 0.4442 10 6 0.4455 -2.2815 1.5531 11 6 1.1885 -2.4679 2.8775 12 6 0.1909 -2.4011 4.0358 13 6 0.9338 -2.5881 5.3602 14 8 0.0022 -2.5252 6.4419 15 6 0.5027 -2.6744 7.6966 16 6 1.8615 -2.8829 7.8824 17 6 2.3685 -3.0289 9.1591 18 6 1.5213 -2.9779 10.2506 19 6 0.1657 -2.7760 10.0678 20 6 -0.3454 -2.6240 8.7933 21 6 1.7038 -3.6308 -0.1889 22 6 2.7655 -3.6430 -1.2906 23 6 1.2874 -3.8147 -1.6495 24 1 -0.4849 0.8377 0.0621 25 1 -0.0521 -1.3118 1.5491 26 1 -0.2970 -3.0714 1.4387 27 1 1.6860 -3.4377 2.8816 28 1 1.9309 -1.6781 2.9920 29 1 -0.3064 -1.4311 4.0315 30 1 -0.5518 -3.1906 3.9216 31 1 1.4308 -3.5582 5.3641 32 1 1.6768 -1.7988 5.4746 33 1 2.5231 -2.9272 7.0299 34 1 3.4269 -3.1868 9.3046 35 1 1.9190 -3.0964 11.2477 36 1 -0.4939 -2.7361 10.9219 37 1 -1.4043 -2.4667 8.6511 38 1 1.6463 -4.5015 0.4643 39 1 3.2386 -2.6943 -1.5440 40 1 3.4061 -4.5219 -1.3624 41 1 0.9562 -4.8064 -1.9575 42 1 0.7875 -2.9790 -2.1394 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357626692.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:40:27 Heat of formation + Delta-G solvation = 22.299174 kcal Electronic energy + Delta-G solvation = -20417.827457 eV Core-core repulsion = 17364.320653 eV Total energy + Delta-G solvation = -3053.506804 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.09477 -37.58121 -37.06006 -34.58101 -32.86100 -31.15647 -30.56799 -29.69294 -27.29897 -24.62716 -23.20919 -22.46004 -21.55715 -21.29085 -20.51109 -19.63583 -18.18179 -16.39111 -16.16119 -16.06531 -15.71204 -15.38215 -14.65489 -14.48826 -14.17332 -13.64896 -13.61899 -13.43355 -12.80948 -12.59834 -12.15379 -11.98832 -11.73586 -11.50989 -11.41699 -11.05928 -10.92031 -10.75884 -10.64207 -10.56082 -10.43166 -10.14131 -9.92928 -9.63142 -9.51731 -9.24940 -9.13145 -8.46178 -8.26196 -6.57124 -5.78609 -3.39540 1.21339 1.35199 3.23983 3.35013 3.41519 3.42989 3.68442 4.44202 4.71166 4.77583 4.93909 4.99347 5.12175 5.13861 5.23187 5.26663 5.31989 5.41988 5.51429 5.53052 5.87092 5.87218 5.92481 6.01558 6.13035 6.17840 6.25703 6.29074 6.34733 6.39625 6.48023 6.49875 6.62311 6.68078 6.75529 6.78927 7.05033 7.16956 7.23268 7.45165 7.70185 7.79682 8.47181 9.15241 9.78574 10.34338 11.16700 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.019843 B = 0.003425 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.717715 B = 8172.174574 C = 8837.771288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.011 3.989 3 Si 0.895 3.105 4 H -0.281 1.281 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.258 4.258 8 H 0.065 0.935 9 N -0.553 5.553 10 C 0.147 3.853 11 C -0.130 4.130 12 C -0.113 4.113 13 C 0.061 3.939 14 O -0.315 6.315 15 C 0.137 3.863 16 C -0.211 4.211 17 C -0.081 4.081 18 C -0.167 4.167 19 C -0.083 4.083 20 C -0.158 4.158 21 C 0.121 3.879 22 C -0.197 4.197 23 C -0.223 4.223 24 H 0.255 0.745 25 H 0.101 0.899 26 H 0.026 0.974 27 H 0.045 0.955 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.129 0.871 34 H 0.123 0.877 35 H 0.120 0.880 36 H 0.126 0.874 37 H 0.129 0.871 38 H 0.086 0.914 39 H 0.096 0.904 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.717 -6.592 15.748 17.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.189 4.189 3 Si 0.724 3.276 4 H -0.207 1.207 5 H -0.215 1.215 6 H -0.209 1.209 7 C -0.387 4.387 8 H 0.083 0.917 9 N -0.270 5.270 10 C 0.021 3.979 11 C -0.170 4.170 12 C -0.151 4.151 13 C -0.014 4.014 14 O -0.229 6.229 15 C 0.091 3.909 16 C -0.230 4.230 17 C -0.099 4.099 18 C -0.185 4.185 19 C -0.101 4.101 20 C -0.177 4.177 21 C 0.012 3.988 22 C -0.235 4.235 23 C -0.264 4.264 24 H 0.065 0.935 25 H 0.119 0.881 26 H 0.044 0.956 27 H 0.064 0.936 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.147 0.853 34 H 0.141 0.859 35 H 0.138 0.862 36 H 0.144 0.856 37 H 0.147 0.853 38 H 0.103 0.897 39 H 0.115 0.885 40 H 0.092 0.908 41 H 0.087 0.913 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.380 -6.386 15.615 16.927 hybrid contribution 0.753 0.816 -0.118 1.116 sum 2.133 -5.570 15.497 16.605 Atomic orbital electron populations 1.70038 1.05487 1.26149 1.50898 1.25110 0.94966 0.98683 1.00190 0.86492 0.79269 0.83490 0.78321 1.20694 1.21546 1.20890 1.19033 0.94354 0.85580 1.39775 0.91740 1.43438 1.49135 1.01358 1.33046 1.20949 0.90443 1.03112 0.83407 1.22122 0.98392 1.00872 0.95610 1.21546 0.99349 1.03206 0.91032 1.23037 0.92040 1.01017 0.85307 1.86102 1.37844 1.86588 1.12352 1.19125 0.92071 0.94547 0.85175 1.21360 0.94566 1.08277 0.98789 1.20957 0.99678 0.97295 0.91956 1.21025 0.93771 1.04979 0.98770 1.20949 0.95412 0.97639 0.96099 1.20487 0.99943 1.06688 0.90566 1.21218 1.00290 0.90283 0.87023 1.23029 0.91922 1.01781 1.06806 1.23363 0.97339 1.00586 1.05071 0.93490 0.88119 0.95595 0.93635 0.91983 0.90918 0.91454 0.92264 0.92060 0.85302 0.85949 0.86158 0.85587 0.85269 0.89658 0.88533 0.90832 0.91282 0.89064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.86 11.33 55.49 0.63 -24.23 16 2 C 0.01 0.29 4.96 -17.43 -0.09 0.20 16 3 Si 0.90 21.22 29.61 -169.99 -5.03 16.18 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.26 -6.84 8.63 -15.06 -0.13 -6.97 16 8 H 0.07 1.72 6.55 -52.49 -0.34 1.37 16 9 N -0.55 -13.48 2.78 -165.67 -0.46 -13.95 16 10 C 0.15 3.31 5.34 -4.04 -0.02 3.29 16 11 C -0.13 -2.42 5.54 -26.73 -0.15 -2.57 16 12 C -0.11 -1.81 5.58 -26.73 -0.15 -1.96 16 13 C 0.06 0.86 4.74 37.16 0.18 1.04 16 14 O -0.32 -4.73 10.14 -19.43 -0.20 -4.93 16 15 C 0.14 1.85 6.69 -39.22 -0.26 1.59 16 16 C -0.21 -2.57 9.04 -39.44 -0.36 -2.93 16 17 C -0.08 -0.84 10.04 -39.61 -0.40 -1.24 16 18 C -0.17 -1.61 10.04 -39.56 -0.40 -2.01 16 19 C -0.08 -0.82 10.04 -39.60 -0.40 -1.22 16 20 C -0.16 -1.88 9.99 -39.43 -0.39 -2.27 16 21 C 0.12 2.59 6.56 -67.93 -0.45 2.14 16 22 C -0.20 -3.91 9.80 -26.69 -0.26 -4.17 16 23 C -0.22 -4.58 10.36 -26.70 -0.28 -4.86 16 24 H 0.26 6.96 8.32 -40.82 -0.34 6.62 16 25 H 0.10 2.58 5.36 -51.93 -0.28 2.30 16 26 H 0.03 0.56 8.07 -51.93 -0.42 0.14 16 27 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.06 0.77 7.65 -51.93 -0.40 0.37 16 32 H 0.06 0.85 7.68 -51.93 -0.40 0.45 16 33 H 0.13 1.46 6.30 -52.49 -0.33 1.13 16 34 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 35 H 0.12 0.87 8.06 -52.48 -0.42 0.44 16 36 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 37 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 38 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 39 H 0.10 2.09 6.37 -51.93 -0.33 1.75 16 40 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 41 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 42 H 0.09 2.15 8.14 -51.93 -0.42 1.72 16 LS Contribution 346.18 15.07 5.22 5.22 Total: -1.00 -28.71 346.18 -10.10 -38.81 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -6.71 Total: 4.83 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: -3.55 Total: -21.92 kcal Atomic # 7 Polarization: -38.34 SS G_CDS: 0.17 Total: -38.18 kcal Atomic # 8 Polarization: -4.73 SS G_CDS: -0.20 Total: -4.93 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -28.71 -10.10 -38.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357626692.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.105 kcal (2) G-P(sol) polarization free energy of solvation -28.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds