Wall clock time and date at job start Mon Mar 30 2020 07:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 120.00059 * 2 1 4 4 H 1.48498 * 109.47670 * 240.00090 * 3 2 1 5 5 H 1.48500 * 109.47161 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46770 * 119.99947 * 3 2 1 7 7 C 1.38812 * 119.99923 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00168 * 157.94542 * 7 2 1 9 9 N 1.36935 * 120.00029 * 337.94615 * 7 2 1 10 10 C 1.46496 * 120.00168 * 324.92336 * 9 7 2 11 11 C 1.53003 * 109.46867 * 270.00096 * 10 9 7 12 12 C 1.53008 * 109.47212 * 179.97438 * 11 10 9 13 13 C 1.52995 * 109.47453 * 179.97438 * 12 11 10 14 14 O 1.42896 * 109.47289 * 179.97438 * 13 12 11 15 15 C 1.35900 * 116.99908 * 179.97438 * 14 13 12 16 16 C 1.38725 * 120.05717 * 359.72574 * 15 14 13 17 17 C 1.38147 * 119.94383 * 179.74123 * 16 15 14 18 18 C 1.38259 * 120.05594 * 0.51108 * 17 16 15 19 19 C 1.38271 * 120.11246 * 359.76631 * 18 17 16 20 20 C 1.38149 * 120.05225 * 359.97438 * 19 18 17 21 21 C 1.46503 * 120.00127 * 144.92213 * 9 7 2 22 22 C 1.53004 * 117.49740 * 3.23544 * 21 9 7 23 23 C 1.52995 * 117.49870 * 294.57853 * 21 9 7 24 24 H 0.96995 * 119.99672 * 355.76210 * 1 2 3 25 25 H 1.08995 * 109.47211 * 29.99607 * 10 9 7 26 26 H 1.09000 * 109.47465 * 150.00134 * 10 9 7 27 27 H 1.09001 * 109.46980 * 299.99328 * 11 10 9 28 28 H 1.08994 * 109.47445 * 59.99804 * 11 10 9 29 29 H 1.09005 * 109.46810 * 300.00102 * 12 11 10 30 30 H 1.09000 * 109.47049 * 59.99220 * 12 11 10 31 31 H 1.09000 * 109.47054 * 300.00316 * 13 12 11 32 32 H 1.09000 * 109.46895 * 59.99854 * 13 12 11 33 33 H 1.08000 * 120.02978 * 359.97438 * 16 15 14 34 34 H 1.07999 * 119.97561 * 180.27484 * 17 16 15 35 35 H 1.08003 * 119.94872 * 179.74392 * 18 17 16 36 36 H 1.07998 * 119.97452 * 180.02562 * 19 18 17 37 37 H 1.07996 * 120.02048 * 179.97438 * 20 19 18 38 38 H 1.08999 * 115.55313 * 148.90890 * 21 9 7 39 39 H 1.09001 * 117.49599 * 0.02562 * 22 21 9 40 40 H 1.09000 * 117.49619 * 145.02077 * 22 21 9 41 41 H 1.09002 * 117.50220 * 214.97803 * 23 21 9 42 42 H 1.09001 * 117.50083 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6965 -1.2124 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0309 -1.2363 -0.3517 9 7 1.4007 -2.3449 0.4442 10 6 0.4455 -2.2815 1.5531 11 6 1.1885 -2.4679 2.8775 12 6 0.1909 -2.4011 4.0358 13 6 0.9338 -2.5881 5.3602 14 8 0.0022 -2.5252 6.4419 15 6 0.5027 -2.6744 7.6966 16 6 1.8615 -2.8829 7.8824 17 6 2.3685 -3.0289 9.1591 18 6 1.5213 -2.9779 10.2506 19 6 0.1657 -2.7760 10.0678 20 6 -0.3454 -2.6240 8.7933 21 6 1.7038 -3.6308 -0.1889 22 6 2.7655 -3.6430 -1.2906 23 6 1.2874 -3.8147 -1.6495 24 1 -0.4849 0.8377 0.0621 25 1 -0.0521 -1.3118 1.5491 26 1 -0.2970 -3.0714 1.4387 27 1 1.6860 -3.4377 2.8816 28 1 1.9309 -1.6781 2.9920 29 1 -0.3064 -1.4311 4.0315 30 1 -0.5518 -3.1906 3.9216 31 1 1.4308 -3.5582 5.3641 32 1 1.6768 -1.7988 5.4746 33 1 2.5231 -2.9272 7.0299 34 1 3.4269 -3.1868 9.3046 35 1 1.9190 -3.0964 11.2477 36 1 -0.4939 -2.7361 10.9219 37 1 -1.4043 -2.4667 8.6511 38 1 1.6463 -4.5015 0.4643 39 1 3.2386 -2.6943 -1.5440 40 1 3.4061 -4.5219 -1.3624 41 1 0.9562 -4.8064 -1.9575 42 1 0.7875 -2.9790 -2.1394 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357626692.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:40:27 Heat of formation + Delta-G solvation = 9.199963 kcal Electronic energy + Delta-G solvation = -20418.395481 eV Core-core repulsion = 17364.320653 eV Total energy + Delta-G solvation = -3054.074828 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.03830 -38.92077 -38.40518 -36.12908 -34.60147 -32.39414 -31.86807 -30.73243 -28.81550 -26.39676 -24.48368 -23.44987 -23.02505 -22.56635 -21.90754 -21.43274 -19.14099 -18.23133 -17.42296 -17.13061 -16.95710 -16.66487 -16.41939 -15.83754 -15.32590 -15.15618 -14.73754 -14.41410 -14.32222 -13.83640 -13.74924 -13.56206 -13.07031 -12.88332 -12.63645 -12.54861 -12.49515 -12.28454 -12.24634 -11.99547 -11.76139 -11.65309 -11.62129 -11.36995 -11.23563 -10.89159 -10.45725 -9.94890 -9.16496 -8.53297 -7.78927 -5.44514 0.39652 0.50130 1.44314 1.46795 1.53044 2.20142 2.49659 2.85642 3.14600 3.41840 3.52566 3.85408 3.93734 3.97671 4.08482 4.26427 4.30814 4.32879 4.40916 4.44991 4.49787 4.51937 4.56185 4.64740 4.81317 4.82530 4.89029 4.93842 5.06886 5.09914 5.14026 5.27078 5.37042 5.39598 5.49338 5.51641 5.55324 5.60259 5.68736 5.88179 5.89753 6.45278 6.47091 7.15861 7.87112 8.36329 9.11350 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.019843 B = 0.003425 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.717715 B = 8172.174574 C = 8837.771288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.037 4.037 3 Si 0.951 3.049 4 H -0.277 1.277 5 H -0.294 1.294 6 H -0.278 1.278 7 C -0.260 4.260 8 H 0.060 0.940 9 N -0.572 5.572 10 C 0.146 3.854 11 C -0.111 4.111 12 C -0.104 4.104 13 C 0.069 3.931 14 O -0.335 6.335 15 C 0.105 3.895 16 C -0.225 4.225 17 C -0.087 4.087 18 C -0.164 4.164 19 C -0.082 4.082 20 C -0.174 4.174 21 C 0.101 3.899 22 C -0.182 4.182 23 C -0.221 4.221 24 H 0.250 0.750 25 H 0.068 0.932 26 H 0.028 0.972 27 H 0.061 0.939 28 H 0.043 0.957 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.131 0.869 34 H 0.146 0.854 35 H 0.150 0.850 36 H 0.155 0.845 37 H 0.132 0.868 38 H 0.113 0.887 39 H 0.073 0.927 40 H 0.112 0.888 41 H 0.102 0.898 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.090 -8.020 17.598 19.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.234 4.234 3 Si 0.779 3.221 4 H -0.203 1.203 5 H -0.220 1.220 6 H -0.204 1.204 7 C -0.390 4.390 8 H 0.078 0.922 9 N -0.289 5.289 10 C 0.020 3.980 11 C -0.151 4.151 12 C -0.143 4.143 13 C -0.006 4.006 14 O -0.249 6.249 15 C 0.060 3.940 16 C -0.243 4.243 17 C -0.105 4.105 18 C -0.182 4.182 19 C -0.100 4.100 20 C -0.192 4.192 21 C -0.007 4.007 22 C -0.220 4.220 23 C -0.261 4.261 24 H 0.060 0.940 25 H 0.086 0.914 26 H 0.047 0.953 27 H 0.080 0.920 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.149 0.851 34 H 0.164 0.836 35 H 0.168 0.832 36 H 0.173 0.827 37 H 0.150 0.850 38 H 0.131 0.869 39 H 0.092 0.908 40 H 0.130 0.870 41 H 0.120 0.880 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.770 -7.832 17.471 19.345 hybrid contribution 0.323 1.182 -0.643 1.384 sum 3.093 -6.650 16.828 18.357 Atomic orbital electron populations 1.70168 1.06695 1.26310 1.52667 1.25747 0.95572 1.01315 1.00792 0.85605 0.78039 0.80075 0.78390 1.20251 1.21978 1.20380 1.19212 0.94249 0.86730 1.38792 0.92194 1.43664 1.49244 1.01963 1.34030 1.20879 0.90696 1.01386 0.85008 1.21815 0.97933 1.00949 0.94415 1.21369 0.98860 1.02577 0.91455 1.22842 0.91522 1.01813 0.84386 1.86035 1.38335 1.87388 1.13165 1.19442 0.93176 0.96653 0.84761 1.21521 0.94113 1.08773 0.99921 1.21314 1.01146 0.96563 0.91427 1.21453 0.93575 1.03213 0.99967 1.21332 0.96238 0.96347 0.96078 1.20748 1.00205 1.07143 0.91143 1.21553 1.01583 0.89853 0.87739 1.23036 0.91721 1.02258 1.04942 1.23277 0.97938 1.00827 1.04101 0.94042 0.91401 0.95315 0.91996 0.93780 0.92548 0.90775 0.90792 0.92068 0.85108 0.83627 0.83198 0.82721 0.84998 0.86923 0.90840 0.86981 0.88005 0.92916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.24 11.33 21.65 0.25 -52.99 16 2 C -0.04 -2.04 4.96 84.86 0.42 -1.62 16 3 Si 0.95 44.48 29.61 68.60 2.03 46.51 16 4 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 5 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 6 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 7 C -0.26 -13.99 8.63 84.03 0.73 -13.26 16 8 H 0.06 3.23 6.55 -2.91 -0.02 3.21 16 9 N -0.57 -28.04 2.78 -678.05 -1.88 -29.93 16 10 C 0.15 6.70 5.34 86.38 0.46 7.16 16 11 C -0.11 -4.14 5.54 30.60 0.17 -3.97 16 12 C -0.10 -3.36 5.58 30.60 0.17 -3.19 16 13 C 0.07 1.94 4.74 71.98 0.34 2.28 16 14 O -0.33 -10.12 10.14 -92.42 -0.94 -11.06 16 15 C 0.10 2.80 6.69 22.50 0.15 2.95 16 16 C -0.22 -5.24 9.04 22.36 0.20 -5.03 16 17 C -0.09 -1.60 10.04 22.25 0.22 -1.38 16 18 C -0.16 -2.66 10.04 22.28 0.22 -2.44 16 19 C -0.08 -1.43 10.04 22.26 0.22 -1.21 16 20 C -0.17 -3.98 9.99 22.37 0.22 -3.76 16 21 C 0.10 4.18 6.56 44.99 0.30 4.47 16 22 C -0.18 -6.86 9.80 30.62 0.30 -6.56 16 23 C -0.22 -8.83 10.36 30.62 0.32 -8.51 16 24 H 0.25 14.18 8.32 -92.71 -0.77 13.41 16 25 H 0.07 3.62 5.36 -2.39 -0.01 3.61 16 26 H 0.03 1.26 8.07 -2.39 -0.02 1.24 16 27 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 30 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.07 1.84 7.65 -2.39 -0.02 1.82 16 32 H 0.06 1.69 7.68 -2.39 -0.02 1.67 16 33 H 0.13 2.86 6.30 -2.91 -0.02 2.84 16 34 H 0.15 1.93 8.06 -2.91 -0.02 1.90 16 35 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 36 H 0.16 1.71 8.06 -2.91 -0.02 1.69 16 37 H 0.13 2.79 8.06 -2.91 -0.02 2.77 16 38 H 0.11 4.02 8.14 -2.39 -0.02 4.00 16 39 H 0.07 3.13 6.37 -2.39 -0.02 3.12 16 40 H 0.11 3.38 8.14 -2.39 -0.02 3.36 16 41 H 0.10 3.38 8.14 -2.39 -0.02 3.36 16 42 H 0.05 2.51 8.14 -2.39 -0.02 2.49 16 Total: -1.00 -63.32 346.18 4.88 -58.44 By element: Atomic # 1 Polarization: 22.10 SS G_CDS: 0.98 Total: 23.08 kcal Atomic # 6 Polarization: -38.50 SS G_CDS: 4.45 Total: -34.06 kcal Atomic # 7 Polarization: -81.28 SS G_CDS: -1.64 Total: -82.92 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: -0.94 Total: -11.06 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -63.32 4.88 -58.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357626692.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.638 kcal (2) G-P(sol) polarization free energy of solvation -63.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds