Wall clock time and date at job start Mon Mar 30 2020 07:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 119.99729 * 2 1 4 4 H 1.48502 * 109.47197 * 269.99827 * 3 2 1 5 5 H 1.48498 * 109.46980 * 29.99967 * 3 2 1 6 6 H 1.48501 * 109.47144 * 149.99933 * 3 2 1 7 7 C 1.37870 * 120.00357 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99948 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99982 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.47164 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47220 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.46981 * 179.97438 * 11 10 9 13 13 N 1.46903 * 109.47014 * 179.97438 * 12 11 10 14 14 C 1.46562 * 111.00000 * 176.37494 * 13 12 11 15 15 C 1.52264 * 111.01359 * 321.85883 * 14 13 12 16 16 C 1.51621 * 112.87229 * 292.94630 * 15 14 13 17 17 O 1.43234 * 110.54446 * 64.15132 * 16 15 14 18 18 C 1.36216 * 115.43711 * 275.77813 * 17 16 15 19 19 C 1.38589 * 119.97191 * 250.04082 * 18 17 16 20 20 C 1.38334 * 119.76153 * 178.91215 * 19 18 17 21 21 C 1.38252 * 120.29701 * 359.72360 * 20 19 18 22 22 C 1.38334 * 120.15929 * 0.32402 * 21 20 19 23 23 C 1.38627 * 120.11932 * 69.18290 * 18 17 16 24 24 H 0.97000 * 120.00300 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.47617 * 59.99948 * 9 7 2 26 26 H 1.09005 * 109.46996 * 299.99343 * 9 7 2 27 27 H 1.09001 * 109.47500 * 59.99590 * 10 9 7 28 28 H 1.09004 * 109.46970 * 300.00023 * 10 9 7 29 29 H 1.08992 * 109.46968 * 59.99741 * 11 10 9 30 30 H 1.08995 * 109.47075 * 299.99562 * 11 10 9 31 31 H 1.09003 * 109.46888 * 59.99923 * 12 11 10 32 32 H 1.08995 * 109.47103 * 299.99844 * 12 11 10 33 33 H 1.08999 * 109.17332 * 201.46492 * 14 13 12 34 34 H 1.09006 * 109.16767 * 82.25120 * 14 13 12 35 35 H 1.09005 * 108.80479 * 172.06756 * 15 14 13 36 36 H 1.09001 * 108.80133 * 53.82282 * 15 14 13 37 37 H 1.08997 * 109.26111 * 303.87706 * 16 15 14 38 38 H 1.08994 * 109.23088 * 184.40582 * 16 15 14 39 39 H 1.08000 * 120.11414 * 358.63556 * 19 18 17 40 40 H 1.08000 * 119.84778 * 179.72042 * 20 19 18 41 41 H 1.07998 * 119.92429 * 180.32515 * 21 20 19 42 42 H 1.08001 * 120.17776 * 180.12445 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1939 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1938 0.0000 10 6 4.0217 -2.6363 -0.0001 11 6 5.5517 -2.6363 -0.0001 12 6 6.0618 -4.0788 0.0004 13 7 7.5308 -4.0787 -0.0003 14 6 8.0561 -5.4442 0.0867 15 6 7.2086 -6.2968 1.0212 16 6 7.2972 -5.8516 2.4679 17 8 6.7583 -4.5335 2.6221 18 6 7.6192 -3.5138 2.3493 19 6 8.0939 -2.7147 3.3773 20 6 8.9856 -1.6946 3.0983 21 6 9.4086 -1.4734 1.8008 22 6 8.9369 -2.2677 0.7711 23 6 8.0357 -3.2846 1.0471 24 1 -0.4850 0.8400 -0.0004 25 1 3.8746 -0.6806 0.8904 26 1 3.8752 -0.6795 -0.8896 27 1 3.6587 -3.1501 -0.8903 28 1 3.6580 -3.1504 0.8897 29 1 5.9150 -2.1225 0.8898 30 1 5.9150 -2.1224 -0.8901 31 1 5.6984 -4.5929 -0.8894 32 1 5.6985 -4.5923 0.8906 33 1 9.0791 -5.4110 0.4616 34 1 8.0544 -5.8923 -0.9070 35 1 7.5418 -7.3323 0.9511 36 1 6.1685 -6.2424 0.6999 37 1 8.3412 -5.8521 2.7809 38 1 6.7343 -6.5455 3.0921 39 1 7.7654 -2.8850 4.3919 40 1 9.3530 -1.0682 3.8977 41 1 10.1090 -0.6787 1.5905 42 1 9.2687 -2.0965 -0.2423 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395314116.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:12 Heat of formation + Delta-G solvation = -8.997348 kcal Electronic energy + Delta-G solvation = -21811.959705 eV Core-core repulsion = 18757.095782 eV Total energy + Delta-G solvation = -3054.863923 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.24611 -37.63125 -37.00687 -34.60076 -32.74009 -31.99458 -30.56466 -29.45706 -28.08553 -26.01930 -24.72461 -22.78490 -22.02008 -21.48714 -20.21955 -19.92191 -17.87893 -16.81690 -16.60797 -16.17071 -15.57320 -15.38731 -15.08718 -14.64766 -14.13699 -13.94614 -13.86573 -13.45626 -13.21387 -12.66070 -12.57579 -12.17730 -12.10192 -11.82713 -11.75238 -11.52513 -11.26982 -11.08482 -10.91075 -10.55955 -10.46791 -10.23389 -9.78898 -9.59080 -9.40791 -9.06543 -8.89785 -8.53148 -8.45466 -8.36958 -5.96407 -3.93257 1.11671 1.27049 3.31600 3.37029 3.43606 3.49855 3.75326 3.83158 4.48252 4.53274 4.64413 4.87109 4.92481 4.96200 5.06745 5.14306 5.27059 5.35218 5.37833 5.39694 5.47672 5.53348 5.60743 5.68105 5.80571 5.90880 5.99391 6.15233 6.20045 6.21887 6.38587 6.40426 6.49966 6.60699 6.78763 6.87704 6.93263 7.09808 7.14309 7.44549 7.50406 7.58014 7.89696 8.63825 9.09221 9.67141 11.17335 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.019271 B = 0.004868 C = 0.004358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.633222 B = 5750.451414 C = 6423.796823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.065 3.935 3 Si 0.879 3.121 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.517 4.517 8 H 0.071 0.929 9 C -0.013 4.013 10 C -0.098 4.098 11 C -0.115 4.115 12 C 0.043 3.957 13 N -0.496 5.496 14 C 0.056 3.944 15 C -0.196 4.196 16 C 0.063 3.937 17 O -0.320 6.320 18 C 0.070 3.930 19 C -0.128 4.128 20 C -0.111 4.111 21 C -0.124 4.124 22 C -0.085 4.085 23 C 0.068 3.932 24 H 0.262 0.738 25 H 0.013 0.987 26 H 0.010 0.990 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.055 0.945 38 H 0.099 0.901 39 H 0.128 0.872 40 H 0.126 0.874 41 H 0.126 0.874 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.535 -10.764 4.652 25.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.136 4.136 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.555 4.555 8 H 0.089 0.911 9 C -0.050 4.050 10 C -0.136 4.136 11 C -0.153 4.153 12 C -0.083 4.083 13 N -0.217 5.217 14 C -0.071 4.071 15 C -0.235 4.235 16 C -0.012 4.012 17 O -0.237 6.237 18 C 0.024 3.976 19 C -0.147 4.147 20 C -0.130 4.130 21 C -0.143 4.143 22 C -0.104 4.104 23 C -0.026 4.026 24 H 0.071 0.929 25 H 0.032 0.968 26 H 0.028 0.972 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.104 0.896 37 H 0.073 0.927 38 H 0.118 0.882 39 H 0.146 0.854 40 H 0.144 0.856 41 H 0.144 0.856 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 22.338 -10.466 4.232 25.029 hybrid contribution 0.128 0.517 0.627 0.822 sum 22.466 -9.950 4.859 25.047 Atomic orbital electron populations 1.69924 1.06287 1.26738 1.51704 1.25034 0.94714 0.99148 0.94693 0.86779 0.80432 0.83642 0.78479 1.20319 1.21462 1.18989 1.21199 0.89714 0.94375 1.50190 0.91131 1.19552 0.96863 0.92553 0.96031 1.21378 0.91733 0.99700 1.00788 1.21682 0.97543 0.94416 1.01652 1.22576 0.84182 0.99467 1.02041 1.60451 1.09958 1.09750 1.41504 1.21989 0.97916 0.87446 0.99753 1.22490 1.03710 1.01126 0.96134 1.22583 0.99232 0.82910 0.96464 1.86446 1.36010 1.13134 1.88096 1.19339 0.93663 0.92000 0.92576 1.21213 0.97276 0.97353 0.98839 1.21036 0.97511 0.97389 0.97029 1.21150 1.00763 0.99676 0.92664 1.20977 0.96205 0.93478 0.99698 1.19270 0.97559 0.97080 0.88653 0.92871 0.96849 0.97210 0.93015 0.92985 0.92629 0.92221 0.90760 0.91498 0.91359 0.89743 0.90088 0.89608 0.92661 0.88245 0.85429 0.85639 0.85584 0.85000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.98 13.96 55.43 0.77 -28.21 16 2 C 0.06 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 22.76 27.47 -169.99 -4.67 18.09 16 4 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.27 -6.68 6.54 56.52 0.37 -6.31 16 7 C -0.52 -15.52 9.66 -34.44 -0.33 -15.86 16 8 H 0.07 2.26 7.99 -52.49 -0.42 1.84 16 9 C -0.01 -0.32 4.04 -27.88 -0.11 -0.44 16 10 C -0.10 -2.10 5.15 -26.73 -0.14 -2.24 16 11 C -0.12 -2.10 4.94 -26.73 -0.13 -2.23 16 12 C 0.04 0.65 3.73 -3.82 -0.01 0.64 16 13 N -0.50 -6.66 4.87 -171.62 -0.84 -7.50 16 14 C 0.06 0.58 5.87 -4.38 -0.03 0.56 16 15 C -0.20 -1.84 5.27 -27.80 -0.15 -1.99 16 16 C 0.06 0.64 6.51 36.46 0.24 0.87 16 17 O -0.32 -4.50 8.18 -20.43 -0.17 -4.67 16 18 C 0.07 0.97 4.81 -39.31 -0.19 0.78 16 19 C -0.13 -1.59 10.00 -39.42 -0.39 -1.98 16 20 C -0.11 -1.21 10.03 -39.54 -0.40 -1.61 16 21 C -0.12 -1.34 10.04 -39.54 -0.40 -1.74 16 22 C -0.08 -1.04 9.98 -39.39 -0.39 -1.44 16 23 C 0.07 0.93 3.06 -83.43 -0.26 0.68 16 24 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 25 H 0.01 0.35 7.20 -51.93 -0.37 -0.03 16 26 H 0.01 0.24 7.57 -51.93 -0.39 -0.15 16 27 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 28 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.05 1.08 6.62 -51.93 -0.34 0.73 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.07 1.05 4.13 -51.93 -0.21 0.83 16 33 H 0.07 0.67 7.81 -51.93 -0.41 0.26 16 34 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.09 0.92 6.02 -51.93 -0.31 0.61 16 37 H 0.05 0.50 7.93 -51.93 -0.41 0.09 16 38 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.13 1.42 8.06 -52.49 -0.42 0.99 16 40 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 41 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 42 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 LS Contribution 326.61 15.07 4.92 4.92 Total: -1.00 -33.30 326.61 -9.46 -42.76 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -6.69 Total: -1.28 kcal Atomic # 6 Polarization: -21.33 SS G_CDS: -2.79 Total: -24.12 kcal Atomic # 7 Polarization: -35.64 SS G_CDS: -0.06 Total: -35.70 kcal Atomic # 8 Polarization: -4.50 SS G_CDS: -0.17 Total: -4.67 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -4.67 Total: 18.09 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.30 -9.46 -42.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395314116.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.763 kcal (2) G-P(sol) polarization free energy of solvation -33.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds