Wall clock time and date at job start Mon Mar 30 2020 07:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86807 * 119.99729 * 2 1 4 4 H 1.48502 * 109.47197 * 269.99827 * 3 2 1 5 5 H 1.48498 * 109.46980 * 29.99967 * 3 2 1 6 6 H 1.48501 * 109.47144 * 149.99933 * 3 2 1 7 7 C 1.37870 * 120.00357 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99948 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99982 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.47164 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47220 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.46981 * 179.97438 * 11 10 9 13 13 N 1.46903 * 109.47014 * 179.97438 * 12 11 10 14 14 C 1.46562 * 111.00000 * 176.37494 * 13 12 11 15 15 C 1.52264 * 111.01359 * 321.85883 * 14 13 12 16 16 C 1.51621 * 112.87229 * 292.94630 * 15 14 13 17 17 O 1.43234 * 110.54446 * 64.15132 * 16 15 14 18 18 C 1.36216 * 115.43711 * 275.77813 * 17 16 15 19 19 C 1.38589 * 119.97191 * 250.04082 * 18 17 16 20 20 C 1.38334 * 119.76153 * 178.91215 * 19 18 17 21 21 C 1.38252 * 120.29701 * 359.72360 * 20 19 18 22 22 C 1.38334 * 120.15929 * 0.32402 * 21 20 19 23 23 C 1.38627 * 120.11932 * 69.18290 * 18 17 16 24 24 H 0.97000 * 120.00300 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.47617 * 59.99948 * 9 7 2 26 26 H 1.09005 * 109.46996 * 299.99343 * 9 7 2 27 27 H 1.09001 * 109.47500 * 59.99590 * 10 9 7 28 28 H 1.09004 * 109.46970 * 300.00023 * 10 9 7 29 29 H 1.08992 * 109.46968 * 59.99741 * 11 10 9 30 30 H 1.08995 * 109.47075 * 299.99562 * 11 10 9 31 31 H 1.09003 * 109.46888 * 59.99923 * 12 11 10 32 32 H 1.08995 * 109.47103 * 299.99844 * 12 11 10 33 33 H 1.08999 * 109.17332 * 201.46492 * 14 13 12 34 34 H 1.09006 * 109.16767 * 82.25120 * 14 13 12 35 35 H 1.09005 * 108.80479 * 172.06756 * 15 14 13 36 36 H 1.09001 * 108.80133 * 53.82282 * 15 14 13 37 37 H 1.08997 * 109.26111 * 303.87706 * 16 15 14 38 38 H 1.08994 * 109.23088 * 184.40582 * 16 15 14 39 39 H 1.08000 * 120.11414 * 358.63556 * 19 18 17 40 40 H 1.08000 * 119.84778 * 179.72042 * 20 19 18 41 41 H 1.07998 * 119.92429 * 180.32515 * 21 20 19 42 42 H 1.08001 * 120.17776 * 180.12445 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1939 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1938 0.0000 10 6 4.0217 -2.6363 -0.0001 11 6 5.5517 -2.6363 -0.0001 12 6 6.0618 -4.0788 0.0004 13 7 7.5308 -4.0787 -0.0003 14 6 8.0561 -5.4442 0.0867 15 6 7.2086 -6.2968 1.0212 16 6 7.2972 -5.8516 2.4679 17 8 6.7583 -4.5335 2.6221 18 6 7.6192 -3.5138 2.3493 19 6 8.0939 -2.7147 3.3773 20 6 8.9856 -1.6946 3.0983 21 6 9.4086 -1.4734 1.8008 22 6 8.9369 -2.2677 0.7711 23 6 8.0357 -3.2846 1.0471 24 1 -0.4850 0.8400 -0.0004 25 1 3.8746 -0.6806 0.8904 26 1 3.8752 -0.6795 -0.8896 27 1 3.6587 -3.1501 -0.8903 28 1 3.6580 -3.1504 0.8897 29 1 5.9150 -2.1225 0.8898 30 1 5.9150 -2.1224 -0.8901 31 1 5.6984 -4.5929 -0.8894 32 1 5.6985 -4.5923 0.8906 33 1 9.0791 -5.4110 0.4616 34 1 8.0544 -5.8923 -0.9070 35 1 7.5418 -7.3323 0.9511 36 1 6.1685 -6.2424 0.6999 37 1 8.3412 -5.8521 2.7809 38 1 6.7343 -6.5455 3.0921 39 1 7.7654 -2.8850 4.3919 40 1 9.3530 -1.0682 3.8977 41 1 10.1090 -0.6787 1.5905 42 1 9.2687 -2.0965 -0.2423 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395314116.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:11 Heat of formation + Delta-G solvation = -29.340472 kcal Electronic energy + Delta-G solvation = -21812.841849 eV Core-core repulsion = 18757.095782 eV Total energy + Delta-G solvation = -3055.746067 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.16674 -38.48757 -38.05814 -36.33568 -34.45048 -33.30105 -31.51438 -30.99221 -29.18537 -27.20609 -26.10223 -23.75121 -23.52127 -22.36581 -21.80476 -21.18039 -18.98743 -18.68761 -17.71102 -17.17397 -16.59179 -16.40333 -16.31298 -16.00789 -15.88394 -14.89194 -14.81504 -14.69131 -14.58972 -14.23165 -13.79076 -13.55190 -13.36372 -13.16177 -12.94550 -12.81294 -12.51707 -12.44464 -12.19405 -11.91172 -11.80799 -11.60699 -11.43389 -11.37255 -11.23763 -11.07657 -10.78016 -9.80740 -9.45244 -9.34177 -8.31308 -6.35341 0.23797 0.37478 1.33115 1.35349 1.48326 2.34939 2.46859 2.83650 2.90896 3.03600 3.69965 3.85856 3.98703 4.00397 4.14940 4.17917 4.22855 4.30358 4.45962 4.47737 4.49791 4.55167 4.61893 4.64216 4.75181 4.78856 4.84276 4.94351 5.02480 5.08305 5.10874 5.17495 5.23297 5.33727 5.48731 5.52453 5.54153 5.61254 5.65619 5.77829 5.96774 6.18482 6.27442 6.57902 6.71840 7.29384 8.85741 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.019271 B = 0.004868 C = 0.004358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.633222 B = 5750.451414 C = 6423.796823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.004 3.996 3 Si 0.951 3.049 4 H -0.263 1.263 5 H -0.280 1.280 6 H -0.252 1.252 7 C -0.534 4.534 8 H 0.031 0.969 9 C -0.008 4.008 10 C -0.090 4.090 11 C -0.100 4.100 12 C 0.053 3.947 13 N -0.500 5.500 14 C 0.053 3.947 15 C -0.190 4.190 16 C 0.056 3.944 17 O -0.347 6.347 18 C 0.051 3.949 19 C -0.145 4.145 20 C -0.110 4.110 21 C -0.123 4.123 22 C -0.095 4.095 23 C 0.049 3.951 24 H 0.267 0.733 25 H 0.011 0.989 26 H 0.017 0.983 27 H 0.051 0.949 28 H 0.040 0.960 29 H 0.044 0.956 30 H 0.060 0.940 31 H 0.080 0.920 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.096 0.904 35 H 0.109 0.891 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.113 0.887 39 H 0.133 0.867 40 H 0.152 0.848 41 H 0.154 0.846 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.205 -10.065 4.652 27.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.192 4.192 3 Si 0.774 3.226 4 H -0.188 1.188 5 H -0.205 1.205 6 H -0.176 1.176 7 C -0.572 4.572 8 H 0.049 0.951 9 C -0.046 4.046 10 C -0.128 4.128 11 C -0.138 4.138 12 C -0.073 4.073 13 N -0.220 5.220 14 C -0.073 4.073 15 C -0.229 4.229 16 C -0.018 4.018 17 O -0.264 6.264 18 C 0.006 3.994 19 C -0.164 4.164 20 C -0.128 4.128 21 C -0.141 4.141 22 C -0.114 4.114 23 C -0.045 4.045 24 H 0.076 0.924 25 H 0.029 0.971 26 H 0.036 0.964 27 H 0.070 0.930 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.079 0.921 31 H 0.098 0.902 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.114 0.886 35 H 0.128 0.872 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.131 0.869 39 H 0.151 0.849 40 H 0.170 0.830 41 H 0.172 0.828 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 25.025 -9.792 4.231 27.204 hybrid contribution -0.742 0.220 0.661 1.018 sum 24.283 -9.573 4.891 26.556 Atomic orbital electron populations 1.70069 1.08234 1.28205 1.52705 1.26030 0.95659 1.03543 0.94010 0.85640 0.79323 0.78202 0.79410 1.18756 1.20530 1.17587 1.21521 0.92137 0.93166 1.50415 0.95084 1.19492 0.93865 0.95205 0.95997 1.21235 0.94271 0.97009 1.00260 1.21461 0.94680 0.96596 1.01041 1.22348 0.85905 0.97056 1.02026 1.60432 1.08344 1.11497 1.41770 1.22106 0.98262 0.86148 1.00764 1.22439 1.02585 1.02533 0.95350 1.22812 0.99961 0.81676 0.97314 1.86393 1.37158 1.14499 1.88358 1.19568 0.94139 0.92527 0.93173 1.21458 0.97997 0.97912 0.99005 1.21389 0.96528 0.96859 0.97990 1.21499 1.00641 0.99772 0.92209 1.21210 0.96181 0.93374 1.00630 1.19440 0.98556 0.97926 0.88619 0.92416 0.97094 0.96434 0.92992 0.94125 0.93769 0.92099 0.90207 0.92139 0.90581 0.88550 0.87225 0.91169 0.91726 0.86872 0.84895 0.82985 0.82804 0.84240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.89 13.96 21.44 0.30 -61.59 16 2 C 0.00 0.25 5.47 84.65 0.46 0.72 16 3 Si 0.95 46.50 27.47 68.60 1.88 48.38 16 4 H -0.26 -12.19 7.11 99.48 0.71 -11.49 16 5 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 6 H -0.25 -11.71 6.54 99.48 0.65 -11.06 16 7 C -0.53 -32.86 9.66 25.60 0.25 -32.61 16 8 H 0.03 2.08 7.99 -2.91 -0.02 2.06 16 9 C -0.01 -0.42 4.04 29.85 0.12 -0.30 16 10 C -0.09 -3.88 5.15 30.60 0.16 -3.72 16 11 C -0.10 -3.59 4.94 30.60 0.15 -3.44 16 12 C 0.05 1.57 3.73 86.30 0.32 1.90 16 13 N -0.50 -12.81 4.87 -696.88 -3.40 -16.21 16 14 C 0.05 1.02 5.87 86.12 0.51 1.53 16 15 C -0.19 -3.29 5.27 29.90 0.16 -3.13 16 16 C 0.06 1.08 6.51 71.53 0.47 1.55 16 17 O -0.35 -9.68 8.18 -96.02 -0.79 -10.46 16 18 C 0.05 1.39 4.81 22.45 0.11 1.50 16 19 C -0.14 -3.45 10.00 22.38 0.22 -3.23 16 20 C -0.11 -2.14 10.03 22.30 0.22 -1.92 16 21 C -0.12 -2.34 10.04 22.30 0.22 -2.12 16 22 C -0.10 -2.17 9.98 22.39 0.22 -1.95 16 23 C 0.05 1.27 3.06 37.89 0.12 1.39 16 24 H 0.27 16.09 8.31 -92.71 -0.77 15.32 16 25 H 0.01 0.55 7.20 -2.39 -0.02 0.54 16 26 H 0.02 0.86 7.57 -2.38 -0.02 0.84 16 27 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.04 1.82 8.14 -2.38 -0.02 1.80 16 29 H 0.04 1.69 6.62 -2.39 -0.02 1.67 16 30 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.08 2.25 8.14 -2.39 -0.02 2.24 16 32 H 0.06 1.90 4.13 -2.39 -0.01 1.89 16 33 H 0.08 1.34 7.81 -2.39 -0.02 1.32 16 34 H 0.10 1.59 8.14 -2.38 -0.02 1.57 16 35 H 0.11 1.25 8.14 -2.38 -0.02 1.23 16 36 H 0.07 1.45 6.02 -2.39 -0.01 1.44 16 37 H 0.06 1.09 7.93 -2.39 -0.02 1.08 16 38 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.13 2.87 8.06 -2.91 -0.02 2.85 16 40 H 0.15 2.06 8.06 -2.91 -0.02 2.03 16 41 H 0.15 2.00 8.06 -2.91 -0.02 1.97 16 42 H 0.14 2.86 8.06 -2.91 -0.02 2.83 16 Total: -1.00 -72.64 326.61 2.64 -70.00 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: 0.93 Total: 13.72 kcal Atomic # 6 Polarization: -47.55 SS G_CDS: 3.71 Total: -43.84 kcal Atomic # 7 Polarization: -74.70 SS G_CDS: -3.10 Total: -77.80 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: -0.79 Total: -10.46 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 1.88 Total: 48.38 kcal Total: -72.64 2.64 -70.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395314116.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.656 kcal (2) G-P(sol) polarization free energy of solvation -72.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds