Wall clock time and date at job start Mon Mar 30 2020 07:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99999 * 2 1 4 4 H 1.48504 * 109.47154 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47040 * 299.99605 * 3 2 1 6 6 H 1.48500 * 109.47655 * 59.99698 * 3 2 1 7 7 C 1.37878 * 119.99937 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99548 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00026 * 0.02562 * 7 2 1 10 10 H 1.08997 * 110.27608 * 302.08396 * 9 7 2 11 11 C 1.54594 * 110.39252 * 64.23312 * 9 7 2 12 12 C 1.54933 * 102.92252 * 140.91703 * 11 9 7 13 13 N 1.48534 * 103.22824 * 322.58255 * 12 11 9 14 14 C 1.46901 * 111.00172 * 159.71827 * 13 12 11 15 15 C 1.53000 * 109.46769 * 52.60936 * 14 13 12 16 16 O 1.42899 * 109.47405 * 64.99669 * 15 14 13 17 17 C 1.42901 * 113.99649 * 179.97438 * 16 15 14 18 18 C 1.50700 * 109.46545 * 179.97438 * 17 16 15 19 19 C 1.38239 * 120.00462 * 269.72993 * 18 17 16 20 20 C 1.38236 * 120.00173 * 179.75017 * 19 18 17 21 21 C 1.38236 * 119.99662 * 0.54099 * 20 19 18 22 22 C 1.38233 * 120.00284 * 359.71376 * 21 20 19 23 23 C 1.38231 * 120.00054 * 0.02562 * 22 21 20 24 24 C 1.47912 * 105.81750 * 39.20906 * 13 12 11 25 25 H 0.97004 * 119.99814 * 359.97438 * 1 2 3 26 26 H 1.09002 * 110.71950 * 259.27335 * 11 9 7 27 27 H 1.09000 * 110.72900 * 22.37975 * 11 9 7 28 28 H 1.08997 * 110.67236 * 204.14971 * 12 11 9 29 29 H 1.09001 * 110.67169 * 81.02116 * 12 11 9 30 30 H 1.09002 * 109.47401 * 292.60643 * 14 13 12 31 31 H 1.09001 * 109.46874 * 172.60656 * 14 13 12 32 32 H 1.09002 * 109.46642 * 184.99944 * 15 14 13 33 33 H 1.09002 * 109.47069 * 304.99474 * 15 14 13 34 34 H 1.08990 * 109.47463 * 299.99806 * 17 16 15 35 35 H 1.08992 * 109.47069 * 60.00902 * 17 16 15 36 36 H 1.08004 * 119.99589 * 359.97438 * 19 18 17 37 37 H 1.07991 * 119.99967 * 180.27406 * 20 19 18 38 38 H 1.08000 * 119.99461 * 179.72546 * 21 20 19 39 39 H 1.08000 * 119.99633 * 179.97438 * 22 21 20 40 40 H 1.07997 * 120.00460 * 179.97438 * 23 22 21 41 41 H 1.08997 * 109.91505 * 94.02357 * 24 13 12 42 42 H 1.08999 * 109.91449 * 215.12087 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3966 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.5915 -2.5545 0.8666 11 6 0.4367 -2.6510 -1.3047 12 6 0.6011 -4.1540 -1.6428 13 7 2.0048 -4.4392 -1.2497 14 6 2.2109 -5.8787 -1.0410 15 6 1.7278 -6.6468 -2.2729 16 8 2.5431 -6.3071 -3.3962 17 6 2.1744 -6.9743 -4.6049 18 6 3.0949 -6.5432 -5.7174 19 6 2.7695 -5.4509 -6.4998 20 6 3.6165 -5.0523 -7.5170 21 6 4.7834 -5.7528 -7.7590 22 6 5.1063 -6.8482 -6.9801 23 6 4.2620 -7.2435 -5.9595 24 6 2.2345 -3.6841 0.0012 25 1 -0.4850 0.8401 0.0004 26 1 -0.6120 -2.4061 -1.1357 27 1 0.8545 -2.0271 -2.0949 28 1 0.4578 -4.3264 -2.7095 29 1 -0.0926 -4.7581 -1.0580 30 1 1.6475 -6.2034 -0.1662 31 1 3.2715 -6.0747 -0.8835 32 1 1.7981 -7.7180 -2.0836 33 1 0.6915 -6.3822 -2.4828 34 1 2.2543 -8.0521 -4.4639 35 1 1.1474 -6.7167 -4.8633 36 1 1.8553 -4.9068 -6.3139 37 1 3.3644 -4.1964 -8.1253 38 1 5.4430 -5.4441 -8.5566 39 1 6.0178 -7.3956 -7.1695 40 1 4.5140 -8.0996 -5.3512 41 1 2.0436 -4.3248 0.8620 42 1 3.2610 -3.3185 0.0309 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397651076.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:59 Heat of formation + Delta-G solvation = -18.264782 kcal Electronic energy + Delta-G solvation = -20794.448585 eV Core-core repulsion = 17739.182796 eV Total energy + Delta-G solvation = -3055.265789 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.41923 -38.39633 -37.06445 -33.38859 -32.10206 -30.95555 -30.84299 -28.18862 -27.67906 -25.75563 -24.07980 -22.64021 -22.33311 -21.34020 -19.76382 -19.31755 -17.02112 -16.55699 -16.32468 -16.10633 -15.49563 -15.11155 -14.56959 -14.38174 -14.09060 -13.85753 -13.46679 -13.26795 -12.81188 -12.56612 -12.43981 -12.18596 -11.85793 -11.46469 -11.25086 -11.08469 -10.99047 -10.83543 -10.65049 -10.51737 -10.45814 -10.12655 -9.63352 -9.45812 -9.21013 -8.96726 -8.88150 -8.71489 -8.34464 -7.58231 -5.95730 -3.96761 1.21584 1.35504 3.34693 3.42507 3.47750 3.53351 4.12164 4.50081 4.70158 4.75004 4.79134 4.94082 5.04407 5.17528 5.26297 5.32777 5.38608 5.39871 5.48959 5.51867 5.59206 5.80485 5.90492 5.95405 5.98106 6.01993 6.18392 6.31724 6.34846 6.37700 6.43967 6.55545 6.64737 6.92377 6.94504 7.19467 7.27175 7.32669 7.53774 7.71456 7.89583 7.97410 8.09654 8.51330 9.04930 9.66356 11.14534 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.018094 B = 0.003880 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.139256 B = 7213.957908 C = 8157.417611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.286 1.286 7 C -0.504 4.504 8 H 0.058 0.942 9 C 0.040 3.960 10 H 0.029 0.971 11 C -0.091 4.091 12 C 0.030 3.970 13 N -0.505 5.505 14 C 0.048 3.952 15 C 0.065 3.935 16 O -0.360 6.360 17 C 0.100 3.900 18 C -0.084 4.084 19 C -0.094 4.094 20 C -0.123 4.123 21 C -0.118 4.118 22 C -0.127 4.127 23 C -0.101 4.101 24 C 0.044 3.956 25 H 0.258 0.742 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.025 0.975 30 H 0.043 0.957 31 H 0.077 0.923 32 H 0.045 0.955 33 H 0.051 0.949 34 H 0.051 0.949 35 H 0.054 0.946 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.121 0.879 41 H 0.018 0.982 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.151 -15.934 -11.884 20.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.141 4.141 3 Si 0.718 3.282 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.543 4.543 8 H 0.076 0.924 9 C 0.021 3.979 10 H 0.047 0.953 11 C -0.129 4.129 12 C -0.098 4.098 13 N -0.229 5.229 14 C -0.081 4.081 15 C -0.012 4.012 16 O -0.279 6.279 17 C 0.023 3.977 18 C -0.085 4.085 19 C -0.112 4.112 20 C -0.141 4.141 21 C -0.136 4.136 22 C -0.145 4.145 23 C -0.119 4.119 24 C -0.084 4.084 25 H 0.068 0.932 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.043 0.957 30 H 0.061 0.939 31 H 0.095 0.905 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.143 0.857 37 H 0.141 0.859 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.139 0.861 41 H 0.036 0.964 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.528 -15.535 -12.266 20.305 hybrid contribution -0.357 0.464 0.649 0.874 sum 4.171 -15.071 -11.617 19.481 Atomic orbital electron populations 1.69982 1.05886 1.26250 1.51039 1.24978 0.94843 0.99038 0.95261 0.86563 0.80270 0.83928 0.77421 1.19742 1.21111 1.21190 1.21236 0.92811 0.90186 1.50032 0.92414 1.19488 0.92476 0.91987 0.93945 0.95311 1.22383 1.00063 0.90645 0.99849 1.23332 0.88359 0.99238 0.98834 1.64800 1.23013 1.04601 1.30524 1.22288 1.01627 0.90251 0.93948 1.22631 0.94560 0.97162 0.86867 1.88142 1.56008 1.67385 1.16322 1.21266 0.96376 0.95653 0.84381 1.19621 0.96104 0.96603 0.96127 1.21129 0.99963 0.95389 0.94760 1.21165 0.94836 0.99857 0.98225 1.21173 0.97026 0.95780 0.99639 1.21108 0.99562 0.97591 0.96203 1.21036 0.93637 0.99884 0.97330 1.23124 1.01901 0.95512 0.87827 0.93241 0.92465 0.92018 0.91951 0.95666 0.93950 0.90491 0.93705 0.93097 0.93041 0.92748 0.85749 0.85914 0.86187 0.86124 0.86138 0.96384 0.91121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.01 12.63 55.43 0.70 -25.31 16 2 C 0.06 1.69 5.34 -17.82 -0.10 1.60 16 3 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 4 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 7 C -0.50 -14.20 8.38 -34.44 -0.29 -14.49 16 8 H 0.06 1.63 7.35 -52.48 -0.39 1.24 16 9 C 0.04 1.02 2.86 -90.42 -0.26 0.77 16 10 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 11 C -0.09 -2.18 5.75 -24.87 -0.14 -2.33 16 12 C 0.03 0.60 5.09 -1.90 -0.01 0.59 16 13 N -0.50 -10.20 5.34 -230.44 -1.23 -11.43 16 14 C 0.05 0.77 5.41 -3.82 -0.02 0.75 16 15 C 0.06 0.90 5.76 37.16 0.21 1.11 16 16 O -0.36 -5.61 10.27 -35.23 -0.36 -5.97 16 17 C 0.10 1.22 6.06 36.01 0.22 1.44 16 18 C -0.08 -1.07 5.51 -104.62 -0.58 -1.64 16 19 C -0.09 -1.18 9.70 -39.58 -0.38 -1.56 16 20 C -0.12 -1.37 10.05 -39.58 -0.40 -1.77 16 21 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 22 C -0.13 -1.31 10.05 -39.59 -0.40 -1.70 16 23 C -0.10 -1.14 9.70 -39.58 -0.38 -1.53 16 24 C 0.04 0.96 6.34 -2.75 -0.02 0.94 16 25 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 26 H 0.06 1.42 8.12 -51.93 -0.42 1.00 16 27 H 0.06 1.61 7.86 -51.93 -0.41 1.21 16 28 H 0.06 1.17 7.56 -51.93 -0.39 0.78 16 29 H 0.03 0.47 8.01 -51.93 -0.42 0.05 16 30 H 0.04 0.64 7.81 -51.93 -0.41 0.23 16 31 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.05 0.70 6.52 -51.93 -0.34 0.36 16 34 H 0.05 0.52 8.09 -51.93 -0.42 0.10 16 35 H 0.05 0.61 8.08 -51.93 -0.42 0.19 16 36 H 0.12 1.47 8.06 -52.48 -0.42 1.05 16 37 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 38 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 39 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 40 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 41 H 0.02 0.36 7.57 -51.93 -0.39 -0.03 16 42 H 0.07 1.62 7.40 -51.93 -0.38 1.23 16 LS Contribution 342.55 15.07 5.16 5.16 Total: -1.00 -30.92 342.55 -10.59 -41.51 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -6.90 Total: -1.28 kcal Atomic # 6 Polarization: -16.50 SS G_CDS: -2.94 Total: -19.44 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: -0.53 Total: -36.74 kcal Atomic # 8 Polarization: -5.61 SS G_CDS: -0.36 Total: -5.97 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.92 -10.59 -41.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397651076.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.248 kcal (2) G-P(sol) polarization free energy of solvation -30.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds