Wall clock time and date at job start Mon Mar 30 2020 07:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99999 * 2 1 4 4 H 1.48504 * 109.47154 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47040 * 299.99605 * 3 2 1 6 6 H 1.48500 * 109.47655 * 59.99698 * 3 2 1 7 7 C 1.37878 * 119.99937 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99548 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00026 * 0.02562 * 7 2 1 10 10 H 1.08997 * 110.27608 * 302.08396 * 9 7 2 11 11 C 1.54594 * 110.39252 * 64.23312 * 9 7 2 12 12 C 1.54933 * 102.92252 * 140.91703 * 11 9 7 13 13 N 1.48534 * 103.22824 * 322.58255 * 12 11 9 14 14 C 1.46901 * 111.00172 * 159.71827 * 13 12 11 15 15 C 1.53000 * 109.46769 * 52.60936 * 14 13 12 16 16 O 1.42899 * 109.47405 * 64.99669 * 15 14 13 17 17 C 1.42901 * 113.99649 * 179.97438 * 16 15 14 18 18 C 1.50700 * 109.46545 * 179.97438 * 17 16 15 19 19 C 1.38239 * 120.00462 * 269.72993 * 18 17 16 20 20 C 1.38236 * 120.00173 * 179.75017 * 19 18 17 21 21 C 1.38236 * 119.99662 * 0.54099 * 20 19 18 22 22 C 1.38233 * 120.00284 * 359.71376 * 21 20 19 23 23 C 1.38231 * 120.00054 * 0.02562 * 22 21 20 24 24 C 1.47912 * 105.81750 * 39.20906 * 13 12 11 25 25 H 0.97004 * 119.99814 * 359.97438 * 1 2 3 26 26 H 1.09002 * 110.71950 * 259.27335 * 11 9 7 27 27 H 1.09000 * 110.72900 * 22.37975 * 11 9 7 28 28 H 1.08997 * 110.67236 * 204.14971 * 12 11 9 29 29 H 1.09001 * 110.67169 * 81.02116 * 12 11 9 30 30 H 1.09002 * 109.47401 * 292.60643 * 14 13 12 31 31 H 1.09001 * 109.46874 * 172.60656 * 14 13 12 32 32 H 1.09002 * 109.46642 * 184.99944 * 15 14 13 33 33 H 1.09002 * 109.47069 * 304.99474 * 15 14 13 34 34 H 1.08990 * 109.47463 * 299.99806 * 17 16 15 35 35 H 1.08992 * 109.47069 * 60.00902 * 17 16 15 36 36 H 1.08004 * 119.99589 * 359.97438 * 19 18 17 37 37 H 1.07991 * 119.99967 * 180.27406 * 20 19 18 38 38 H 1.08000 * 119.99461 * 179.72546 * 21 20 19 39 39 H 1.08000 * 119.99633 * 179.97438 * 22 21 20 40 40 H 1.07997 * 120.00460 * 179.97438 * 23 22 21 41 41 H 1.08997 * 109.91505 * 94.02357 * 24 13 12 42 42 H 1.08999 * 109.91449 * 215.12087 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3966 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.5915 -2.5545 0.8666 11 6 0.4367 -2.6510 -1.3047 12 6 0.6011 -4.1540 -1.6428 13 7 2.0048 -4.4392 -1.2497 14 6 2.2109 -5.8787 -1.0410 15 6 1.7278 -6.6468 -2.2729 16 8 2.5431 -6.3071 -3.3962 17 6 2.1744 -6.9743 -4.6049 18 6 3.0949 -6.5432 -5.7174 19 6 2.7695 -5.4509 -6.4998 20 6 3.6165 -5.0523 -7.5170 21 6 4.7834 -5.7528 -7.7590 22 6 5.1063 -6.8482 -6.9801 23 6 4.2620 -7.2435 -5.9595 24 6 2.2345 -3.6841 0.0012 25 1 -0.4850 0.8401 0.0004 26 1 -0.6120 -2.4061 -1.1357 27 1 0.8545 -2.0271 -2.0949 28 1 0.4578 -4.3264 -2.7095 29 1 -0.0926 -4.7581 -1.0580 30 1 1.6475 -6.2034 -0.1662 31 1 3.2715 -6.0747 -0.8835 32 1 1.7981 -7.7180 -2.0836 33 1 0.6915 -6.3822 -2.4828 34 1 2.2543 -8.0521 -4.4639 35 1 1.1474 -6.7167 -4.8633 36 1 1.8553 -4.9068 -6.3139 37 1 3.3644 -4.1964 -8.1253 38 1 5.4430 -5.4441 -8.5566 39 1 6.0178 -7.3956 -7.1695 40 1 4.5140 -8.0996 -5.3512 41 1 2.0436 -4.3248 0.8620 42 1 3.2610 -3.3185 0.0309 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397651076.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:58 Heat of formation + Delta-G solvation = -36.611869 kcal Electronic energy + Delta-G solvation = -20795.244174 eV Core-core repulsion = 17739.182796 eV Total energy + Delta-G solvation = -3056.061378 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.32973 -39.83595 -38.28630 -35.23966 -33.36450 -32.30322 -31.76924 -29.99284 -29.15900 -26.75618 -26.03390 -23.73885 -23.45924 -22.18903 -21.30136 -21.26433 -18.58572 -17.87928 -17.49344 -17.21980 -16.62710 -16.41385 -16.15170 -15.94729 -15.39326 -14.96618 -14.62530 -14.45792 -14.25538 -13.90699 -13.63505 -13.52908 -13.14591 -13.02776 -12.90463 -12.68967 -12.60663 -12.31599 -11.98078 -11.87612 -11.86196 -11.74889 -11.55078 -11.16306 -10.83027 -10.53524 -10.43737 -9.80198 -9.72886 -9.14254 -8.13084 -6.21159 0.37227 0.51968 1.39695 1.41560 1.53573 2.43936 2.64122 3.14388 3.18355 3.28353 3.87018 3.94068 4.06683 4.14448 4.17282 4.30127 4.32839 4.37040 4.40920 4.43521 4.50513 4.52299 4.58822 4.67160 4.71378 4.79239 4.90317 4.95969 5.05769 5.10426 5.17330 5.24837 5.37249 5.56083 5.56637 5.62364 5.70193 5.73315 5.85003 6.12060 6.19715 6.25412 6.38137 6.47335 6.86947 7.45325 8.96785 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.018094 B = 0.003880 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.139256 B = 7213.957908 C = 8157.417611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.012 3.988 3 Si 0.954 3.046 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.278 1.278 7 C -0.526 4.526 8 H 0.051 0.949 9 C 0.031 3.969 10 H 0.003 0.997 11 C -0.084 4.084 12 C 0.048 3.952 13 N -0.521 5.521 14 C 0.045 3.955 15 C 0.067 3.933 16 O -0.390 6.390 17 C 0.099 3.901 18 C -0.105 4.105 19 C -0.118 4.118 20 C -0.135 4.135 21 C -0.123 4.123 22 C -0.131 4.131 23 C -0.111 4.111 24 C 0.055 3.945 25 H 0.260 0.740 26 H 0.040 0.960 27 H 0.031 0.969 28 H 0.075 0.925 29 H 0.045 0.955 30 H 0.060 0.940 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.052 0.948 34 H 0.074 0.926 35 H 0.058 0.942 36 H 0.119 0.881 37 H 0.136 0.864 38 H 0.145 0.855 39 H 0.146 0.854 40 H 0.136 0.864 41 H 0.036 0.964 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.176 -17.337 -12.584 22.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.187 4.187 3 Si 0.780 3.220 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.204 1.204 7 C -0.564 4.564 8 H 0.069 0.931 9 C 0.012 3.988 10 H 0.021 0.979 11 C -0.123 4.123 12 C -0.080 4.080 13 N -0.246 5.246 14 C -0.083 4.083 15 C -0.010 4.010 16 O -0.310 6.310 17 C 0.023 3.977 18 C -0.106 4.106 19 C -0.136 4.136 20 C -0.153 4.153 21 C -0.141 4.141 22 C -0.148 4.148 23 C -0.129 4.129 24 C -0.073 4.073 25 H 0.069 0.931 26 H 0.059 0.941 27 H 0.050 0.950 28 H 0.093 0.907 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.076 0.924 36 H 0.137 0.863 37 H 0.154 0.846 38 H 0.163 0.837 39 H 0.164 0.836 40 H 0.153 0.847 41 H 0.054 0.946 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.555 -16.956 -12.969 22.058 hybrid contribution -0.655 0.872 0.841 1.378 sum 4.900 -16.084 -12.128 20.731 Atomic orbital electron populations 1.70089 1.07154 1.27142 1.51573 1.25741 0.95708 1.02372 0.94863 0.85562 0.79073 0.79755 0.77629 1.19308 1.20693 1.20352 1.21554 0.92752 0.91812 1.50267 0.93116 1.19472 0.92981 0.92819 0.93478 0.97919 1.22149 0.98395 0.93518 0.98207 1.23148 0.88907 0.96036 0.99904 1.64728 1.22957 1.07372 1.29494 1.22411 1.02237 0.87667 0.95995 1.22646 0.94138 0.98608 0.85568 1.88091 1.56797 1.68568 1.17578 1.21395 0.96478 0.96656 0.83151 1.19834 0.97020 0.97127 0.96577 1.21292 1.00465 0.96040 0.95844 1.21438 0.95152 1.00525 0.98160 1.21534 0.96914 0.95502 1.00115 1.21484 1.00208 0.97583 0.95554 1.21313 0.93398 1.00326 0.97906 1.22859 0.99951 0.94797 0.89683 0.93083 0.94121 0.94966 0.90674 0.93725 0.92256 0.90320 0.90350 0.92944 0.90784 0.92368 0.86256 0.84570 0.83735 0.83589 0.84660 0.94568 0.92445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.70 12.63 21.45 0.27 -54.43 16 2 C 0.01 0.67 5.34 84.66 0.45 1.12 16 3 Si 0.95 45.17 29.54 68.60 2.03 47.20 16 4 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 5 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 6 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 7 C -0.53 -30.29 8.38 25.60 0.21 -30.07 16 8 H 0.05 2.92 7.35 -2.91 -0.02 2.90 16 9 C 0.03 1.65 2.86 -10.66 -0.03 1.62 16 10 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 11 C -0.08 -4.14 5.75 31.80 0.18 -3.95 16 12 C 0.05 1.85 5.09 86.65 0.44 2.29 16 13 N -0.52 -20.47 5.34 -882.99 -4.72 -25.19 16 14 C 0.04 1.34 5.41 86.30 0.47 1.81 16 15 C 0.07 1.67 5.76 71.98 0.41 2.09 16 16 O -0.39 -11.50 10.27 -148.98 -1.53 -13.03 16 17 C 0.10 2.26 6.06 71.24 0.43 2.70 16 18 C -0.11 -2.57 5.51 -19.86 -0.11 -2.68 16 19 C -0.12 -2.94 9.70 22.27 0.22 -2.72 16 20 C -0.13 -2.91 10.05 22.27 0.22 -2.68 16 21 C -0.12 -2.30 10.05 22.27 0.22 -2.08 16 22 C -0.13 -2.42 10.05 22.27 0.22 -2.20 16 23 C -0.11 -2.35 9.70 22.27 0.22 -2.13 16 24 C 0.05 2.41 6.34 86.44 0.55 2.95 16 25 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 26 H 0.04 2.08 8.12 -2.39 -0.02 2.06 16 27 H 0.03 1.73 7.86 -2.39 -0.02 1.71 16 28 H 0.07 2.74 7.56 -2.39 -0.02 2.72 16 29 H 0.04 1.57 8.01 -2.39 -0.02 1.55 16 30 H 0.06 1.59 7.81 -2.39 -0.02 1.58 16 31 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.05 1.29 6.52 -2.39 -0.02 1.27 16 34 H 0.07 1.31 8.09 -2.39 -0.02 1.29 16 35 H 0.06 1.24 8.08 -2.39 -0.02 1.22 16 36 H 0.12 2.91 8.06 -2.91 -0.02 2.89 16 37 H 0.14 2.40 8.06 -2.92 -0.02 2.38 16 38 H 0.14 1.91 8.06 -2.91 -0.02 1.88 16 39 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 40 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 41 H 0.04 1.43 7.57 -2.39 -0.02 1.41 16 42 H 0.06 2.65 7.40 -2.39 -0.02 2.63 16 Total: -1.00 -67.24 342.55 1.13 -66.11 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: 0.97 Total: 13.29 kcal Atomic # 6 Polarization: -38.06 SS G_CDS: 4.12 Total: -33.94 kcal Atomic # 7 Polarization: -75.17 SS G_CDS: -4.45 Total: -79.62 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: -1.53 Total: -13.03 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -67.24 1.13 -66.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397651076.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.497 kcal (2) G-P(sol) polarization free energy of solvation -67.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds