Wall clock time and date at job start Mon Mar 30 2020 07:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00206 * 2 1 4 4 H 1.48493 * 109.47036 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46987 * 300.00065 * 3 2 1 6 6 H 1.48503 * 109.46798 * 59.99806 * 3 2 1 7 7 C 1.37874 * 119.99903 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00306 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00111 * 359.97438 * 7 2 1 10 10 H 1.08998 * 110.90031 * 56.14163 * 9 7 2 11 11 C 1.55422 * 111.10698 * 292.17739 * 9 7 2 12 12 C 1.54321 * 103.04810 * 206.29460 * 11 9 7 13 13 N 1.47448 * 107.23159 * 22.28093 * 12 11 9 14 14 C 1.46900 * 111.00041 * 123.26094 * 13 12 11 15 15 C 1.52995 * 109.47016 * 69.15688 * 14 13 12 16 16 O 1.42898 * 109.47285 * 65.00142 * 15 14 13 17 17 C 1.42898 * 114.00148 * 179.97438 * 16 15 14 18 18 C 1.50698 * 109.46985 * 180.02562 * 17 16 15 19 19 C 1.38230 * 120.00063 * 269.72709 * 18 17 16 20 20 C 1.38240 * 119.99973 * 179.74614 * 19 18 17 21 21 C 1.38237 * 120.00024 * 0.55285 * 20 19 18 22 22 C 1.38238 * 119.99490 * 359.70071 * 21 20 19 23 23 C 1.38232 * 119.99707 * 90.00320 * 18 17 16 24 24 C 1.47846 * 108.56553 * 0.99350 * 13 12 11 25 25 H 0.97006 * 120.00009 * 0.02562 * 1 2 3 26 26 H 1.09004 * 110.69757 * 87.90335 * 11 9 7 27 27 H 1.09004 * 110.69257 * 324.68378 * 11 9 7 28 28 H 1.08999 * 109.88748 * 262.87827 * 12 11 9 29 29 H 1.09000 * 109.89149 * 141.68777 * 12 11 9 30 30 H 1.09001 * 109.47310 * 189.16067 * 14 13 12 31 31 H 1.09001 * 109.46761 * 309.15792 * 14 13 12 32 32 H 1.09002 * 109.47207 * 185.00525 * 15 14 13 33 33 H 1.08997 * 109.47312 * 304.99739 * 15 14 13 34 34 H 1.08996 * 109.47146 * 300.00016 * 17 16 15 35 35 H 1.08997 * 109.46740 * 60.00036 * 17 16 15 36 36 H 1.08005 * 120.00406 * 0.02562 * 19 18 17 37 37 H 1.08000 * 119.99955 * 180.27823 * 20 19 18 38 38 H 1.08000 * 120.00019 * 179.72688 * 21 20 19 39 39 H 1.08000 * 119.99512 * 180.02562 * 22 21 20 40 40 H 1.08000 * 120.00353 * 0.02562 * 23 18 17 41 41 H 1.09002 * 110.37464 * 94.73346 * 24 13 12 42 42 H 1.08999 * 110.37318 * 216.96123 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.5649 -2.5521 -0.8459 11 6 0.4976 -2.7105 1.3424 12 6 0.3927 -4.2467 1.4450 13 7 1.4574 -4.8148 0.5977 14 6 2.3331 -5.7009 1.3760 15 6 1.5623 -6.9627 1.7693 16 8 1.2261 -7.7014 0.5932 17 6 0.5008 -8.9055 0.8506 18 6 0.2015 -9.6000 -0.4529 19 6 -0.9692 -9.3199 -1.1324 20 6 -1.2413 -9.9531 -2.3307 21 6 -0.3480 -10.8749 -2.8438 22 6 0.8203 -11.1588 -2.1616 23 6 1.0951 -10.5214 -0.9661 24 6 2.2260 -3.7029 -0.0012 25 1 -0.4850 0.8401 -0.0004 26 1 -0.4934 -2.2583 1.3035 27 1 1.0741 -2.3071 2.1750 28 1 -0.5822 -4.5766 1.0863 29 1 0.5352 -4.5599 2.4793 30 1 3.1988 -5.9768 0.7738 31 1 2.6664 -5.1836 2.2757 32 1 2.1821 -7.5789 2.4206 33 1 0.6499 -6.6819 2.2953 34 1 1.0990 -9.5618 1.4826 35 1 -0.4336 -8.6653 1.3577 36 1 -1.6693 -8.6030 -0.7294 37 1 -2.1539 -9.7309 -2.8639 38 1 -0.5627 -11.3728 -3.7778 39 1 1.5184 -11.8787 -2.5627 40 1 2.0075 -10.7438 -0.4328 41 1 3.1047 -3.4798 0.6040 42 1 2.5214 -3.9515 -1.0205 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397651078.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:34:00 Heat of formation + Delta-G solvation = -21.299923 kcal Electronic energy + Delta-G solvation = -20594.219133 eV Core-core repulsion = 17538.821730 eV Total energy + Delta-G solvation = -3055.397403 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.42789 -38.34615 -37.09288 -33.34213 -32.14282 -30.97860 -30.84225 -28.18300 -27.72774 -25.77944 -24.16463 -22.66167 -22.24572 -21.35660 -19.66452 -19.44271 -17.03391 -16.55310 -16.40592 -15.97128 -15.44587 -14.99622 -14.86060 -14.46487 -14.07296 -13.93340 -13.47284 -12.90437 -12.88887 -12.54835 -12.37156 -12.23412 -11.94568 -11.76783 -11.17988 -11.11579 -10.99482 -10.98818 -10.80468 -10.51661 -10.44016 -10.11499 -9.62786 -9.45755 -9.17144 -8.99152 -8.90538 -8.82117 -8.37587 -7.49930 -6.00806 -4.03716 1.19554 1.33021 3.29978 3.38025 3.41951 3.52521 4.12524 4.42906 4.70590 4.73579 4.78295 4.92033 5.02700 5.16824 5.27770 5.31454 5.36361 5.42010 5.49427 5.57007 5.59101 5.79869 5.86544 5.88605 5.95883 6.07646 6.23988 6.30340 6.35506 6.41378 6.53629 6.54497 6.56702 6.89896 6.90068 7.16008 7.20061 7.34543 7.63361 7.75576 7.81546 7.94264 8.05196 8.45651 8.99355 9.60387 11.09296 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.028548 B = 0.003147 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.566435 B = 8896.272263 C = 9250.908272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.513 4.513 8 H 0.056 0.944 9 C 0.049 3.951 10 H 0.041 0.959 11 C -0.121 4.121 12 C 0.040 3.960 13 N -0.524 5.524 14 C 0.053 3.947 15 C 0.070 3.930 16 O -0.360 6.360 17 C 0.100 3.900 18 C -0.084 4.084 19 C -0.095 4.095 20 C -0.123 4.123 21 C -0.118 4.118 22 C -0.126 4.126 23 C -0.101 4.101 24 C 0.047 3.953 25 H 0.259 0.741 26 H 0.068 0.932 27 H 0.046 0.954 28 H 0.061 0.939 29 H 0.033 0.967 30 H 0.075 0.925 31 H 0.045 0.955 32 H 0.044 0.956 33 H 0.048 0.952 34 H 0.051 0.949 35 H 0.054 0.946 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.121 0.879 41 H 0.033 0.967 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.346 -20.962 1.294 21.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.551 4.551 8 H 0.074 0.926 9 C 0.030 3.970 10 H 0.059 0.941 11 C -0.160 4.160 12 C -0.088 4.088 13 N -0.248 5.248 14 C -0.076 4.076 15 C -0.007 4.007 16 O -0.279 6.279 17 C 0.023 3.977 18 C -0.084 4.084 19 C -0.113 4.113 20 C -0.141 4.141 21 C -0.136 4.136 22 C -0.144 4.144 23 C -0.119 4.119 24 C -0.080 4.080 25 H 0.069 0.931 26 H 0.087 0.913 27 H 0.065 0.935 28 H 0.080 0.920 29 H 0.051 0.949 30 H 0.093 0.907 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.142 0.858 37 H 0.141 0.859 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.139 0.861 41 H 0.051 0.949 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.663 -21.090 0.724 21.113 hybrid contribution 0.717 1.352 0.978 1.816 sum 0.053 -19.739 1.702 19.812 Atomic orbital electron populations 1.69979 1.05898 1.26365 1.50385 1.24979 0.94837 0.99045 0.95019 0.86567 0.80166 0.83905 0.77545 1.19791 1.20989 1.21115 1.21088 0.92790 0.90344 1.50917 0.92589 1.19781 0.92701 0.90973 0.93531 0.94113 1.22781 1.01875 0.91031 1.00338 1.22909 0.95283 0.96874 0.93748 1.63592 1.11658 1.18687 1.30887 1.22203 0.95880 0.92434 0.97044 1.22591 0.98356 0.92485 0.87317 1.88122 1.74720 1.34374 1.30690 1.21260 0.96012 0.86898 0.93505 1.19632 0.94995 0.96988 0.96806 1.21121 0.96910 0.98394 0.94867 1.21165 0.99810 0.97073 0.96098 1.21173 0.94591 0.98177 0.99705 1.21116 0.97445 1.00397 0.95479 1.21044 0.98490 0.96318 0.96032 1.23166 0.96339 0.90796 0.97729 0.93108 0.91286 0.93480 0.92047 0.94868 0.90661 0.93709 0.93779 0.93358 0.93094 0.92770 0.85774 0.85938 0.86187 0.86115 0.86120 0.94853 0.92036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.78 12.63 55.43 0.70 -25.08 16 2 C 0.06 1.77 5.38 -17.82 -0.10 1.67 16 3 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.51 -14.25 8.50 -34.44 -0.29 -14.54 16 8 H 0.06 1.54 7.77 -52.49 -0.41 1.13 16 9 C 0.05 1.26 2.85 -89.48 -0.26 1.01 16 10 H 0.04 1.15 8.14 -51.93 -0.42 0.73 16 11 C -0.12 -2.87 5.91 -24.75 -0.15 -3.01 16 12 C 0.04 0.78 6.13 -2.83 -0.02 0.77 16 13 N -0.52 -10.42 5.11 -231.24 -1.18 -11.60 16 14 C 0.05 0.87 4.92 -3.83 -0.02 0.85 16 15 C 0.07 0.97 6.03 37.16 0.22 1.19 16 16 O -0.36 -5.55 10.27 -35.23 -0.36 -5.91 16 17 C 0.10 1.20 6.06 36.00 0.22 1.42 16 18 C -0.08 -1.03 5.51 -104.63 -0.58 -1.61 16 19 C -0.09 -1.13 9.70 -39.58 -0.38 -1.52 16 20 C -0.12 -1.31 10.05 -39.58 -0.40 -1.71 16 21 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 22 C -0.13 -1.26 10.05 -39.58 -0.40 -1.66 16 23 C -0.10 -1.11 9.70 -39.58 -0.38 -1.50 16 24 C 0.05 1.03 6.12 -2.30 -0.01 1.02 16 25 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 26 H 0.07 1.74 7.85 -51.93 -0.41 1.34 16 27 H 0.05 1.13 8.04 -51.93 -0.42 0.72 16 28 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.03 0.58 6.91 -51.93 -0.36 0.23 16 30 H 0.07 1.20 8.08 -51.93 -0.42 0.79 16 31 H 0.04 0.70 7.98 -51.93 -0.41 0.29 16 32 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.05 0.66 6.99 -51.93 -0.36 0.30 16 34 H 0.05 0.51 8.08 -51.93 -0.42 0.09 16 35 H 0.05 0.60 8.08 -51.93 -0.42 0.18 16 36 H 0.12 1.40 8.06 -52.48 -0.42 0.97 16 37 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 38 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 39 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 40 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 41 H 0.03 0.73 7.68 -51.93 -0.40 0.33 16 42 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 344.47 15.07 5.19 5.19 Total: -1.00 -30.50 344.47 -10.58 -41.08 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -6.97 Total: -0.86 kcal Atomic # 6 Polarization: -16.26 SS G_CDS: -2.94 Total: -19.20 kcal Atomic # 7 Polarization: -36.20 SS G_CDS: -0.48 Total: -36.68 kcal Atomic # 8 Polarization: -5.55 SS G_CDS: -0.36 Total: -5.91 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.50 -10.58 -41.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397651078.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.777 kcal (2) G-P(sol) polarization free energy of solvation -30.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds