Wall clock time and date at job start Mon Mar 30 2020 07:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00206 * 2 1 4 4 H 1.48493 * 109.47036 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46987 * 300.00065 * 3 2 1 6 6 H 1.48503 * 109.46798 * 59.99806 * 3 2 1 7 7 C 1.37874 * 119.99903 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00306 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00111 * 359.97438 * 7 2 1 10 10 H 1.08998 * 110.90031 * 56.14163 * 9 7 2 11 11 C 1.55422 * 111.10698 * 292.17739 * 9 7 2 12 12 C 1.54321 * 103.04810 * 206.29460 * 11 9 7 13 13 N 1.47448 * 107.23159 * 22.28093 * 12 11 9 14 14 C 1.46900 * 111.00041 * 123.26094 * 13 12 11 15 15 C 1.52995 * 109.47016 * 69.15688 * 14 13 12 16 16 O 1.42898 * 109.47285 * 65.00142 * 15 14 13 17 17 C 1.42898 * 114.00148 * 179.97438 * 16 15 14 18 18 C 1.50698 * 109.46985 * 180.02562 * 17 16 15 19 19 C 1.38230 * 120.00063 * 269.72709 * 18 17 16 20 20 C 1.38240 * 119.99973 * 179.74614 * 19 18 17 21 21 C 1.38237 * 120.00024 * 0.55285 * 20 19 18 22 22 C 1.38238 * 119.99490 * 359.70071 * 21 20 19 23 23 C 1.38232 * 119.99707 * 90.00320 * 18 17 16 24 24 C 1.47846 * 108.56553 * 0.99350 * 13 12 11 25 25 H 0.97006 * 120.00009 * 0.02562 * 1 2 3 26 26 H 1.09004 * 110.69757 * 87.90335 * 11 9 7 27 27 H 1.09004 * 110.69257 * 324.68378 * 11 9 7 28 28 H 1.08999 * 109.88748 * 262.87827 * 12 11 9 29 29 H 1.09000 * 109.89149 * 141.68777 * 12 11 9 30 30 H 1.09001 * 109.47310 * 189.16067 * 14 13 12 31 31 H 1.09001 * 109.46761 * 309.15792 * 14 13 12 32 32 H 1.09002 * 109.47207 * 185.00525 * 15 14 13 33 33 H 1.08997 * 109.47312 * 304.99739 * 15 14 13 34 34 H 1.08996 * 109.47146 * 300.00016 * 17 16 15 35 35 H 1.08997 * 109.46740 * 60.00036 * 17 16 15 36 36 H 1.08005 * 120.00406 * 0.02562 * 19 18 17 37 37 H 1.08000 * 119.99955 * 180.27823 * 20 19 18 38 38 H 1.08000 * 120.00019 * 179.72688 * 21 20 19 39 39 H 1.08000 * 119.99512 * 180.02562 * 22 21 20 40 40 H 1.08000 * 120.00353 * 0.02562 * 23 18 17 41 41 H 1.09002 * 110.37464 * 94.73346 * 24 13 12 42 42 H 1.08999 * 110.37318 * 216.96123 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.5649 -2.5521 -0.8459 11 6 0.4976 -2.7105 1.3424 12 6 0.3927 -4.2467 1.4450 13 7 1.4574 -4.8148 0.5977 14 6 2.3331 -5.7009 1.3760 15 6 1.5623 -6.9627 1.7693 16 8 1.2261 -7.7014 0.5932 17 6 0.5008 -8.9055 0.8506 18 6 0.2015 -9.6000 -0.4529 19 6 -0.9692 -9.3199 -1.1324 20 6 -1.2413 -9.9531 -2.3307 21 6 -0.3480 -10.8749 -2.8438 22 6 0.8203 -11.1588 -2.1616 23 6 1.0951 -10.5214 -0.9661 24 6 2.2260 -3.7029 -0.0012 25 1 -0.4850 0.8401 -0.0004 26 1 -0.4934 -2.2583 1.3035 27 1 1.0741 -2.3071 2.1750 28 1 -0.5822 -4.5766 1.0863 29 1 0.5352 -4.5599 2.4793 30 1 3.1988 -5.9768 0.7738 31 1 2.6664 -5.1836 2.2757 32 1 2.1821 -7.5789 2.4206 33 1 0.6499 -6.6819 2.2953 34 1 1.0990 -9.5618 1.4826 35 1 -0.4336 -8.6653 1.3577 36 1 -1.6693 -8.6030 -0.7294 37 1 -2.1539 -9.7309 -2.8639 38 1 -0.5627 -11.3728 -3.7778 39 1 1.5184 -11.8787 -2.5627 40 1 2.0075 -10.7438 -0.4328 41 1 3.1047 -3.4798 0.6040 42 1 2.5214 -3.9515 -1.0205 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397651078.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:34:00 Heat of formation + Delta-G solvation = -38.992085 kcal Electronic energy + Delta-G solvation = -20594.986323 eV Core-core repulsion = 17538.821730 eV Total energy + Delta-G solvation = -3056.164592 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.30058 -39.81745 -38.28897 -35.20481 -33.37230 -32.27672 -31.76330 -29.99996 -29.20114 -26.77897 -26.07848 -23.62015 -23.45249 -22.18135 -21.51261 -21.13400 -18.51234 -17.89129 -17.46470 -17.13768 -16.64947 -16.42550 -16.25946 -16.07139 -15.22833 -15.08132 -14.36498 -14.25594 -14.19433 -14.04739 -13.89107 -13.51665 -13.15559 -13.02029 -12.96175 -12.84083 -12.69540 -12.27511 -12.01438 -11.87043 -11.81183 -11.73245 -11.53250 -11.11276 -10.91204 -10.52907 -10.44362 -9.79640 -9.72603 -9.08161 -8.15051 -6.25632 0.37854 0.52478 1.39859 1.41358 1.53294 2.41646 2.65612 3.14590 3.18199 3.25707 3.89500 3.94802 4.08156 4.14735 4.18742 4.28679 4.32360 4.36009 4.41071 4.46052 4.50577 4.55781 4.65750 4.68987 4.75350 4.79686 4.83757 4.94363 5.05911 5.10943 5.17953 5.23605 5.31485 5.57187 5.57247 5.62857 5.70965 5.78186 5.89642 6.07247 6.12621 6.27564 6.36863 6.48025 6.84439 7.42278 8.94982 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.028548 B = 0.003147 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.566435 B = 8896.272263 C = 9250.908272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.012 3.988 3 Si 0.958 3.042 4 H -0.265 1.265 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.531 4.531 8 H 0.055 0.945 9 C 0.039 3.961 10 H 0.001 0.999 11 C -0.113 4.113 12 C 0.053 3.947 13 N -0.533 5.533 14 C 0.049 3.951 15 C 0.073 3.927 16 O -0.390 6.390 17 C 0.099 3.901 18 C -0.106 4.106 19 C -0.117 4.117 20 C -0.134 4.134 21 C -0.123 4.123 22 C -0.131 4.131 23 C -0.112 4.112 24 C 0.060 3.940 25 H 0.261 0.739 26 H 0.043 0.957 27 H 0.039 0.961 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.057 0.943 32 H 0.077 0.923 33 H 0.050 0.950 34 H 0.072 0.928 35 H 0.058 0.942 36 H 0.120 0.880 37 H 0.138 0.862 38 H 0.145 0.855 39 H 0.146 0.854 40 H 0.134 0.866 41 H 0.037 0.963 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.818 -22.303 1.838 22.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.187 4.187 3 Si 0.784 3.216 4 H -0.189 1.189 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.570 4.570 8 H 0.074 0.926 9 C 0.020 3.980 10 H 0.020 0.980 11 C -0.152 4.152 12 C -0.075 4.075 13 N -0.257 5.257 14 C -0.079 4.079 15 C -0.004 4.004 16 O -0.310 6.310 17 C 0.023 3.977 18 C -0.106 4.106 19 C -0.136 4.136 20 C -0.152 4.152 21 C -0.141 4.141 22 C -0.148 4.148 23 C -0.130 4.130 24 C -0.067 4.067 25 H 0.070 0.930 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.068 0.932 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.138 0.862 37 H 0.156 0.844 38 H 0.163 0.837 39 H 0.163 0.837 40 H 0.152 0.848 41 H 0.056 0.944 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.506 -22.452 1.276 22.494 hybrid contribution 0.335 1.704 0.755 1.893 sum 0.842 -20.748 2.031 20.865 Atomic orbital electron populations 1.70106 1.07375 1.27291 1.51087 1.25803 0.95688 1.02608 0.94600 0.85502 0.79107 0.79407 0.77623 1.18934 1.20630 1.20513 1.21413 0.92962 0.91613 1.50987 0.92637 1.19723 0.93062 0.92133 0.93104 0.98029 1.22577 0.99848 0.93905 0.98835 1.22765 0.95499 0.93750 0.95494 1.63558 1.12179 1.17908 1.32091 1.22347 0.95731 0.92778 0.97016 1.22581 0.98699 0.91822 0.87272 1.88070 1.75346 1.35746 1.31831 1.21386 0.96273 0.86115 0.93890 1.19837 0.95530 0.97839 0.97400 1.21288 0.97322 0.99119 0.95824 1.21448 1.00756 0.97178 0.95854 1.21537 0.94268 0.97726 1.00528 1.21483 0.97884 1.00429 0.95054 1.21308 0.98821 0.96199 0.96660 1.22907 0.95657 0.90142 0.98022 0.92996 0.93834 0.94209 0.92127 0.91914 0.90489 0.92502 0.90503 0.93192 0.90950 0.92383 0.86154 0.84449 0.83726 0.83658 0.84771 0.94422 0.92452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.59 12.63 21.45 0.27 -54.32 16 2 C 0.01 0.68 5.38 84.65 0.46 1.13 16 3 Si 0.96 44.13 29.54 68.60 2.03 46.16 16 4 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 6 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 7 C -0.53 -30.00 8.50 25.60 0.22 -29.78 16 8 H 0.06 3.06 7.77 -2.91 -0.02 3.04 16 9 C 0.04 2.05 2.85 -10.05 -0.03 2.03 16 10 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 11 C -0.11 -5.42 5.91 31.88 0.19 -5.23 16 12 C 0.05 2.05 6.13 86.65 0.53 2.58 16 13 N -0.53 -20.75 5.11 -885.52 -4.53 -25.27 16 14 C 0.05 1.50 4.92 86.30 0.42 1.92 16 15 C 0.07 1.83 6.03 71.98 0.43 2.27 16 16 O -0.39 -11.41 10.27 -148.98 -1.53 -12.94 16 17 C 0.10 2.24 6.06 71.24 0.43 2.67 16 18 C -0.11 -2.52 5.51 -19.87 -0.11 -2.63 16 19 C -0.12 -2.80 9.70 22.27 0.22 -2.58 16 20 C -0.13 -2.76 10.05 22.27 0.22 -2.53 16 21 C -0.12 -2.21 10.05 22.27 0.22 -1.98 16 22 C -0.13 -2.35 10.05 22.27 0.22 -2.13 16 23 C -0.11 -2.31 9.70 22.27 0.22 -2.10 16 24 C 0.06 2.66 6.12 86.77 0.53 3.19 16 25 H 0.26 14.65 8.31 -92.70 -0.77 13.88 16 26 H 0.04 2.27 7.85 -2.38 -0.02 2.25 16 27 H 0.04 1.93 8.04 -2.38 -0.02 1.91 16 28 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.06 2.07 6.91 -2.39 -0.02 2.06 16 30 H 0.08 2.31 8.08 -2.39 -0.02 2.29 16 31 H 0.06 1.61 7.98 -2.39 -0.02 1.59 16 32 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.05 1.23 6.99 -2.39 -0.02 1.22 16 34 H 0.07 1.28 8.08 -2.39 -0.02 1.26 16 35 H 0.06 1.22 8.08 -2.39 -0.02 1.20 16 36 H 0.12 2.80 8.06 -2.91 -0.02 2.77 16 37 H 0.14 2.25 8.06 -2.91 -0.02 2.23 16 38 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 39 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 40 H 0.13 2.28 8.06 -2.91 -0.02 2.25 16 41 H 0.04 1.62 7.68 -2.39 -0.02 1.60 16 42 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 Total: -1.00 -66.32 344.47 1.39 -64.93 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: 0.97 Total: 14.60 kcal Atomic # 6 Polarization: -37.35 SS G_CDS: 4.18 Total: -33.17 kcal Atomic # 7 Polarization: -75.33 SS G_CDS: -4.26 Total: -79.59 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: -1.53 Total: -12.94 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -66.32 1.39 -64.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397651078.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.941 kcal (2) G-P(sol) polarization free energy of solvation -66.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds