Wall clock time and date at job start Mon Mar 30 2020 07:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30815 * 1 3 3 Si 1.86803 * 120.00218 * 2 1 4 4 H 1.48497 * 109.46802 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.46860 * 120.00026 * 3 2 1 6 6 H 1.48498 * 109.46934 * 240.00031 * 3 2 1 7 7 C 1.39946 * 119.99906 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00262 * 154.27847 * 7 2 1 9 9 C 1.41396 * 119.99971 * 334.27512 * 7 2 1 10 10 C 1.40724 * 120.24366 * 334.58098 * 9 7 2 11 11 C 1.37614 * 119.74470 * 179.72166 * 10 9 7 12 12 C 1.38638 * 120.24927 * 0.53193 * 11 10 9 13 13 C 1.50692 * 119.75394 * 179.74269 * 12 11 10 14 14 O 1.42899 * 109.47142 * 270.02496 * 13 12 11 15 15 C 1.42907 * 114.00035 * 179.97438 * 14 13 12 16 16 C 1.52999 * 109.47107 * 179.97438 * 15 14 13 17 17 H 1.09000 * 109.50554 * 304.92640 * 16 15 14 18 18 C 1.53117 * 109.50317 * 184.80294 * 16 15 14 19 19 C 1.53120 * 109.16047 * 182.40796 * 18 16 15 20 20 C 1.53034 * 109.28133 * 57.65158 * 19 18 16 21 21 N 1.46845 * 109.52637 * 300.82614 * 20 19 18 22 22 C 1.46850 * 111.19793 * 61.73645 * 21 20 19 23 23 C 1.38637 * 120.49804 * 359.76200 * 12 11 10 24 24 C 1.37619 * 120.25051 * 359.96076 * 23 12 11 25 25 H 0.97006 * 120.00491 * 174.30128 * 1 2 3 26 26 H 1.08000 * 120.12665 * 359.97438 * 10 9 7 27 27 H 1.08001 * 119.87778 * 180.28042 * 11 10 9 28 28 H 1.09009 * 109.47128 * 30.02045 * 13 12 11 29 29 H 1.08996 * 109.47808 * 150.01796 * 13 12 11 30 30 H 1.08999 * 109.47005 * 299.99642 * 15 14 13 31 31 H 1.09002 * 109.46710 * 60.00069 * 15 14 13 32 32 H 1.09000 * 109.52549 * 302.30897 * 18 16 15 33 33 H 1.08999 * 109.52128 * 62.50077 * 18 16 15 34 34 H 1.09007 * 109.50021 * 297.71307 * 19 18 16 35 35 H 1.09001 * 109.50539 * 177.60017 * 19 18 16 36 36 H 1.08995 * 109.46479 * 180.80506 * 20 19 18 37 37 H 1.09007 * 109.44678 * 60.83264 * 20 19 18 38 38 H 1.00906 * 110.99410 * 297.64281 * 21 20 19 39 39 H 1.09003 * 109.45862 * 178.24597 * 22 21 20 40 40 H 1.09000 * 109.45347 * 58.27301 * 22 21 20 41 41 H 1.08007 * 119.87491 * 179.97438 * 23 12 11 42 42 H 1.08005 * 120.12496 * 179.97438 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 1.2772 2.7464 0.0006 5 1 3.0960 1.6963 1.2125 6 1 3.0959 1.6963 -1.2125 7 6 2.0079 -1.2120 -0.0005 8 1 3.0076 -1.2582 -0.4065 9 6 1.4060 -2.3760 0.5304 10 6 0.3966 -2.2704 1.5053 11 6 -0.1862 -3.4099 2.0109 12 6 0.2252 -4.6588 1.5714 13 6 -0.4167 -5.8994 2.1369 14 8 0.3097 -6.3279 3.2905 15 6 -0.2196 -7.5035 3.9070 16 6 0.6323 -7.8686 5.1243 17 1 1.6746 -7.9698 4.8219 18 6 0.1395 -9.1927 5.7146 19 6 0.9577 -9.5202 6.9667 20 6 0.8276 -8.3720 7.9700 21 7 1.3123 -7.1283 7.3582 22 6 0.5115 -6.7683 6.1811 23 6 1.2229 -4.7749 0.6159 24 6 1.8158 -3.6488 0.0922 25 1 -0.4851 -0.8359 -0.0834 26 1 0.0778 -1.2987 1.8524 27 1 -0.9642 -3.3312 2.7559 28 1 -1.4470 -5.6800 2.4171 29 1 -0.4048 -6.6893 1.3859 30 1 -1.2457 -7.3169 4.2240 31 1 -0.2039 -8.3268 3.1928 32 1 -0.9137 -9.1033 5.9808 33 1 0.2642 -9.9879 4.9796 34 1 2.0053 -9.6479 6.6937 35 1 0.5834 -10.4402 7.4158 36 1 1.4205 -8.5957 8.8568 37 1 -0.2185 -8.2540 8.2528 38 1 2.2908 -7.1990 7.1220 39 1 0.8750 -5.8271 5.7686 40 1 -0.5330 -6.6578 6.4726 41 1 1.5359 -5.7529 0.2810 42 1 2.5932 -3.7417 -0.6518 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398974005.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:57 Heat of formation + Delta-G solvation = -56.630532 kcal Electronic energy + Delta-G solvation = -20564.433888 eV Core-core repulsion = 17507.504435 eV Total energy + Delta-G solvation = -3056.929453 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.28124 -38.04379 -36.84873 -34.04625 -32.51556 -31.47633 -30.22342 -29.38359 -26.83174 -25.42903 -23.79372 -23.41362 -21.76290 -21.12309 -20.45714 -20.01887 -17.92841 -16.18175 -16.14765 -15.86174 -15.19159 -14.87727 -14.67265 -14.49728 -14.05747 -13.88889 -13.56320 -13.21832 -12.73827 -12.47531 -12.33790 -12.12207 -11.86595 -11.77310 -11.55849 -11.45668 -11.19233 -11.10712 -10.90118 -10.68691 -10.58092 -10.40189 -10.32064 -9.65254 -9.47329 -9.22274 -8.99273 -8.45252 -7.69296 -7.55547 -7.19985 -4.46439 2.63849 2.89108 3.15199 3.22889 3.36234 4.00711 4.01084 4.21154 4.53154 4.61800 4.66504 4.82375 4.90576 5.18678 5.28092 5.36021 5.42366 5.47296 5.52995 5.54909 5.67486 5.72008 5.72856 5.79659 5.87106 5.89689 6.04817 6.11620 6.22645 6.25315 6.26304 6.76992 6.90057 7.01457 7.13894 7.25069 7.38227 7.58249 7.69625 7.77396 7.80398 7.95531 8.18272 8.30536 8.74416 8.87208 10.02641 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.030243 B = 0.003130 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.614369 B = 8944.894451 C = 9391.707797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.039 3.961 3 Si 1.065 2.935 4 H -0.274 1.274 5 H -0.274 1.274 6 H -0.276 1.276 7 C -0.520 4.520 8 H 0.076 0.924 9 C 0.102 3.898 10 C -0.224 4.224 11 C -0.059 4.059 12 C -0.235 4.235 13 C 0.131 3.869 14 O -0.381 6.381 15 C 0.067 3.933 16 C -0.121 4.121 17 H 0.077 0.923 18 C -0.113 4.113 19 C -0.156 4.156 20 C 0.055 3.945 21 N -0.687 5.687 22 C 0.065 3.935 23 C -0.059 4.059 24 C -0.233 4.233 25 H 0.300 0.700 26 H 0.106 0.894 27 H 0.089 0.911 28 H 0.038 0.962 29 H 0.037 0.963 30 H 0.043 0.957 31 H 0.041 0.959 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.341 0.659 39 H 0.088 0.912 40 H 0.069 0.931 41 H 0.088 0.912 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.677 -13.894 9.901 17.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.183 4.183 3 Si 0.889 3.111 4 H -0.198 1.198 5 H -0.199 1.199 6 H -0.201 1.201 7 C -0.548 4.548 8 H 0.094 0.906 9 C 0.099 3.901 10 C -0.243 4.243 11 C -0.078 4.078 12 C -0.236 4.236 13 C 0.055 3.945 14 O -0.301 6.301 15 C -0.010 4.010 16 C -0.142 4.142 17 H 0.095 0.905 18 C -0.151 4.151 19 C -0.196 4.196 20 C -0.075 4.075 21 N -0.315 5.315 22 C -0.065 4.065 23 C -0.077 4.077 24 C -0.252 4.252 25 H 0.113 0.887 26 H 0.124 0.876 27 H 0.107 0.893 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.158 0.842 39 H 0.106 0.894 40 H 0.088 0.912 41 H 0.106 0.894 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.143 -11.717 10.466 15.753 hybrid contribution 0.228 -2.704 -0.925 2.867 sum -0.914 -14.421 9.542 17.316 Atomic orbital electron populations 1.70451 1.08251 1.34349 1.28633 1.27046 0.95671 1.04375 0.91244 0.83640 0.75685 0.73776 0.78045 1.19829 1.19912 1.20117 1.20611 1.03291 0.94225 1.36646 0.90596 1.17707 0.90405 0.92578 0.89377 1.21125 1.04050 0.96961 1.02169 1.20454 0.97732 0.92397 0.97168 1.18697 1.06441 0.92145 1.06348 1.21051 0.93420 0.94308 0.85685 1.88071 1.55079 1.42924 1.44024 1.22344 0.96328 0.88586 0.93775 1.21852 1.00749 0.96062 0.95506 0.90502 1.21547 0.99857 0.96609 0.97087 1.22254 1.00520 0.99818 0.96967 1.22039 1.01322 0.87726 0.96426 1.60672 1.07425 1.33186 1.30178 1.22057 0.98569 0.97944 0.87897 1.20408 0.94890 0.96572 0.95834 1.20909 1.06178 0.92609 1.05530 0.88674 0.87642 0.89260 0.94371 0.94512 0.93928 0.94129 0.91751 0.91902 0.91947 0.91477 0.90922 0.91054 0.84154 0.89351 0.91240 0.89385 0.88856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.16 12.32 55.55 0.68 -20.47 16 2 C 0.04 0.99 4.93 -17.35 -0.09 0.91 16 3 Si 1.07 21.61 30.00 -169.99 -5.10 16.51 16 4 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 5 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 6 H -0.28 -5.29 7.11 56.52 0.40 -4.89 16 7 C -0.52 -13.95 8.98 -37.74 -0.34 -14.29 16 8 H 0.08 1.98 7.96 -52.48 -0.42 1.56 16 9 C 0.10 2.75 5.30 -106.82 -0.57 2.18 16 10 C -0.22 -5.82 7.96 -38.87 -0.31 -6.13 16 11 C -0.06 -1.39 9.67 -39.66 -0.38 -1.77 16 12 C -0.24 -5.25 5.53 -104.33 -0.58 -5.83 16 13 C 0.13 2.39 6.05 36.00 0.22 2.61 16 14 O -0.38 -6.79 9.88 -35.23 -0.35 -7.14 16 15 C 0.07 0.90 5.32 37.16 0.20 1.10 16 16 C -0.12 -1.41 2.58 -90.54 -0.23 -1.65 16 17 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 18 C -0.11 -1.05 5.29 -26.61 -0.14 -1.19 16 19 C -0.16 -1.27 6.08 -26.65 -0.16 -1.43 16 20 C 0.05 0.48 6.55 -3.84 -0.03 0.46 16 21 N -0.69 -7.54 6.87 -113.81 -0.78 -8.32 16 22 C 0.06 0.80 5.72 -3.83 -0.02 0.78 16 23 C -0.06 -1.34 9.67 -39.66 -0.38 -1.73 16 24 C -0.23 -5.83 9.80 -38.87 -0.38 -6.21 16 25 H 0.30 8.19 6.70 -40.82 -0.27 7.91 16 26 H 0.11 2.82 6.50 -52.49 -0.34 2.48 16 27 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 28 H 0.04 0.65 8.08 -51.92 -0.42 0.23 16 29 H 0.04 0.62 8.08 -51.93 -0.42 0.20 16 30 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.64 8.14 -51.92 -0.42 0.21 16 38 H 0.34 3.50 8.86 -39.29 -0.35 3.15 16 39 H 0.09 1.30 7.85 -51.93 -0.41 0.89 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.09 1.79 8.06 -52.48 -0.42 1.37 16 42 H 0.09 2.21 8.06 -52.48 -0.42 1.79 16 LS Contribution 339.45 15.07 5.12 5.12 Total: -1.00 -27.92 339.45 -10.54 -38.46 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -6.92 Total: 8.03 kcal Atomic # 6 Polarization: -29.00 SS G_CDS: -3.19 Total: -32.19 kcal Atomic # 7 Polarization: -28.69 SS G_CDS: -0.10 Total: -28.79 kcal Atomic # 8 Polarization: -6.79 SS G_CDS: -0.35 Total: -7.14 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.10 Total: 16.51 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -27.92 -10.54 -38.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398974005.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.171 kcal (2) G-P(sol) polarization free energy of solvation -27.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds