Wall clock time and date at job start Mon Mar 30 2020 07:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30815 * 1 3 3 Si 1.86803 * 120.00218 * 2 1 4 4 H 1.48497 * 109.46802 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.46860 * 120.00026 * 3 2 1 6 6 H 1.48498 * 109.46934 * 240.00031 * 3 2 1 7 7 C 1.39946 * 119.99906 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00262 * 154.27847 * 7 2 1 9 9 C 1.41396 * 119.99971 * 334.27512 * 7 2 1 10 10 C 1.40724 * 120.24366 * 334.58098 * 9 7 2 11 11 C 1.37614 * 119.74470 * 179.72166 * 10 9 7 12 12 C 1.38638 * 120.24927 * 0.53193 * 11 10 9 13 13 C 1.50692 * 119.75394 * 179.74269 * 12 11 10 14 14 O 1.42899 * 109.47142 * 270.02496 * 13 12 11 15 15 C 1.42907 * 114.00035 * 179.97438 * 14 13 12 16 16 C 1.52999 * 109.47107 * 179.97438 * 15 14 13 17 17 H 1.09000 * 109.50554 * 304.92640 * 16 15 14 18 18 C 1.53117 * 109.50317 * 184.80294 * 16 15 14 19 19 C 1.53120 * 109.16047 * 182.40796 * 18 16 15 20 20 C 1.53034 * 109.28133 * 57.65158 * 19 18 16 21 21 N 1.46845 * 109.52637 * 300.82614 * 20 19 18 22 22 C 1.46850 * 111.19793 * 61.73645 * 21 20 19 23 23 C 1.38637 * 120.49804 * 359.76200 * 12 11 10 24 24 C 1.37619 * 120.25051 * 359.96076 * 23 12 11 25 25 H 0.97006 * 120.00491 * 174.30128 * 1 2 3 26 26 H 1.08000 * 120.12665 * 359.97438 * 10 9 7 27 27 H 1.08001 * 119.87778 * 180.28042 * 11 10 9 28 28 H 1.09009 * 109.47128 * 30.02045 * 13 12 11 29 29 H 1.08996 * 109.47808 * 150.01796 * 13 12 11 30 30 H 1.08999 * 109.47005 * 299.99642 * 15 14 13 31 31 H 1.09002 * 109.46710 * 60.00069 * 15 14 13 32 32 H 1.09000 * 109.52549 * 302.30897 * 18 16 15 33 33 H 1.08999 * 109.52128 * 62.50077 * 18 16 15 34 34 H 1.09007 * 109.50021 * 297.71307 * 19 18 16 35 35 H 1.09001 * 109.50539 * 177.60017 * 19 18 16 36 36 H 1.08995 * 109.46479 * 180.80506 * 20 19 18 37 37 H 1.09007 * 109.44678 * 60.83264 * 20 19 18 38 38 H 1.00906 * 110.99410 * 297.64281 * 21 20 19 39 39 H 1.09003 * 109.45862 * 178.24597 * 22 21 20 40 40 H 1.09000 * 109.45347 * 58.27301 * 22 21 20 41 41 H 1.08007 * 119.87491 * 179.97438 * 23 12 11 42 42 H 1.08005 * 120.12496 * 179.97438 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 1.2772 2.7464 0.0006 5 1 3.0960 1.6963 1.2125 6 1 3.0959 1.6963 -1.2125 7 6 2.0079 -1.2120 -0.0005 8 1 3.0076 -1.2582 -0.4065 9 6 1.4060 -2.3760 0.5304 10 6 0.3966 -2.2704 1.5053 11 6 -0.1862 -3.4099 2.0109 12 6 0.2252 -4.6588 1.5714 13 6 -0.4167 -5.8994 2.1369 14 8 0.3097 -6.3279 3.2905 15 6 -0.2196 -7.5035 3.9070 16 6 0.6323 -7.8686 5.1243 17 1 1.6746 -7.9698 4.8219 18 6 0.1395 -9.1927 5.7146 19 6 0.9577 -9.5202 6.9667 20 6 0.8276 -8.3720 7.9700 21 7 1.3123 -7.1283 7.3582 22 6 0.5115 -6.7683 6.1811 23 6 1.2229 -4.7749 0.6159 24 6 1.8158 -3.6488 0.0922 25 1 -0.4851 -0.8359 -0.0834 26 1 0.0778 -1.2987 1.8524 27 1 -0.9642 -3.3312 2.7559 28 1 -1.4470 -5.6800 2.4171 29 1 -0.4048 -6.6893 1.3859 30 1 -1.2457 -7.3169 4.2240 31 1 -0.2039 -8.3268 3.1928 32 1 -0.9137 -9.1033 5.9808 33 1 0.2642 -9.9879 4.9796 34 1 2.0053 -9.6479 6.6937 35 1 0.5834 -10.4402 7.4158 36 1 1.4205 -8.5957 8.8568 37 1 -0.2185 -8.2540 8.2528 38 1 2.2908 -7.1990 7.1220 39 1 0.8750 -5.8271 5.7686 40 1 -0.5330 -6.6578 6.4726 41 1 1.5359 -5.7529 0.2810 42 1 2.5932 -3.7417 -0.6518 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398974005.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:56 Heat of formation + Delta-G solvation = -72.359112 kcal Electronic energy + Delta-G solvation = -20565.115930 eV Core-core repulsion = 17507.504435 eV Total energy + Delta-G solvation = -3057.611495 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.27187 -39.72743 -38.23596 -35.89519 -33.52612 -32.41853 -31.86031 -31.27939 -28.48991 -26.57763 -25.20685 -24.55340 -23.04711 -22.59725 -22.00749 -21.15239 -19.87300 -17.42233 -17.16087 -16.98289 -16.72206 -16.27710 -16.13616 -15.61921 -15.57556 -15.18083 -15.03359 -14.26022 -14.16322 -13.97449 -13.90172 -13.47714 -13.14231 -13.10118 -13.01455 -12.71317 -12.48046 -12.23244 -12.08069 -12.00805 -11.95831 -11.57906 -11.51505 -11.43647 -11.28505 -10.89079 -10.51433 -9.64364 -9.50069 -9.28248 -9.19072 -6.49629 0.78324 0.92972 1.49892 1.61195 1.79825 2.32013 2.53543 2.96178 3.36527 3.56839 3.74270 3.87342 3.96532 4.10575 4.15749 4.19772 4.30758 4.40994 4.47763 4.49369 4.52110 4.53412 4.62685 4.64666 4.68752 4.82618 4.97282 5.00356 5.07383 5.08676 5.11222 5.19201 5.20145 5.36662 5.40926 5.70623 5.76360 5.80326 6.04930 6.07072 6.21573 6.35948 6.37184 6.44151 6.76309 6.90707 8.00640 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.030243 B = 0.003130 C = 0.002981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.614369 B = 8944.894451 C = 9391.707797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.004 3.996 3 Si 1.117 2.883 4 H -0.270 1.270 5 H -0.265 1.265 6 H -0.256 1.256 7 C -0.558 4.558 8 H 0.072 0.928 9 C 0.073 3.927 10 C -0.242 4.242 11 C -0.066 4.066 12 C -0.225 4.225 13 C 0.134 3.866 14 O -0.405 6.405 15 C 0.063 3.937 16 C -0.115 4.115 17 H 0.065 0.935 18 C -0.109 4.109 19 C -0.151 4.151 20 C 0.054 3.946 21 N -0.698 5.698 22 C 0.070 3.930 23 C -0.062 4.062 24 C -0.249 4.249 25 H 0.284 0.716 26 H 0.088 0.912 27 H 0.109 0.891 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.071 0.929 38 H 0.343 0.657 39 H 0.056 0.944 40 H 0.069 0.931 41 H 0.119 0.881 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.820 -15.981 10.876 19.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.213 4.213 3 Si 0.934 3.066 4 H -0.194 1.194 5 H -0.190 1.190 6 H -0.180 1.180 7 C -0.586 4.586 8 H 0.090 0.910 9 C 0.070 3.930 10 C -0.261 4.261 11 C -0.085 4.085 12 C -0.226 4.226 13 C 0.059 3.941 14 O -0.325 6.325 15 C -0.014 4.014 16 C -0.136 4.136 17 H 0.083 0.917 18 C -0.146 4.146 19 C -0.190 4.190 20 C -0.076 4.076 21 N -0.326 5.326 22 C -0.060 4.060 23 C -0.080 4.080 24 C -0.268 4.268 25 H 0.096 0.904 26 H 0.106 0.894 27 H 0.127 0.873 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.090 0.910 38 H 0.161 0.839 39 H 0.075 0.925 40 H 0.088 0.912 41 H 0.137 0.863 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.288 -13.844 11.446 18.010 hybrid contribution 0.230 -2.287 -1.128 2.560 sum -1.058 -16.131 10.319 19.179 Atomic orbital electron populations 1.70565 1.08942 1.33224 1.31041 1.28480 0.95694 1.07502 0.89584 0.83014 0.74801 0.69683 0.79128 1.19404 1.18972 1.18018 1.20809 1.03577 0.95460 1.38736 0.90954 1.18046 0.91235 0.93615 0.90110 1.21101 1.04928 0.97157 1.02921 1.20743 0.98000 0.92361 0.97361 1.19227 1.04983 0.93489 1.04927 1.20969 0.93540 0.92989 0.86612 1.88009 1.55655 1.44983 1.43850 1.22595 0.97082 0.87317 0.94383 1.21813 0.99922 0.97170 0.94677 0.91690 1.21535 1.00288 0.95150 0.97664 1.22211 1.00416 1.00172 0.96207 1.22117 1.01504 0.87004 0.96939 1.60659 1.07517 1.34845 1.29562 1.21893 0.98505 0.96958 0.88637 1.20767 0.94481 0.97263 0.95468 1.21134 1.06781 0.92836 1.06054 0.90416 0.89386 0.87281 0.92842 0.92397 0.92770 0.92642 0.91105 0.90977 0.92014 0.89589 0.89620 0.91032 0.83921 0.92494 0.91224 0.86322 0.88351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -45.01 12.32 21.83 0.27 -44.74 16 2 C 0.00 0.19 4.93 85.26 0.42 0.61 16 3 Si 1.12 44.00 30.00 68.60 2.06 46.06 16 4 H -0.27 -10.34 7.11 99.48 0.71 -9.64 16 5 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 6 H -0.26 -9.19 7.11 99.48 0.71 -8.49 16 7 C -0.56 -31.06 8.98 23.46 0.21 -30.85 16 8 H 0.07 3.92 7.96 -2.91 -0.02 3.90 16 9 C 0.07 4.03 5.30 -21.29 -0.11 3.92 16 10 C -0.24 -12.98 7.96 22.73 0.18 -12.80 16 11 C -0.07 -3.13 9.67 22.22 0.21 -2.91 16 12 C -0.23 -9.76 5.53 -19.68 -0.11 -9.87 16 13 C 0.13 4.56 6.05 71.23 0.43 4.99 16 14 O -0.40 -13.57 9.88 -148.98 -1.47 -15.05 16 15 C 0.06 1.52 5.32 71.98 0.38 1.91 16 16 C -0.12 -2.46 2.58 -10.74 -0.03 -2.49 16 17 H 0.06 1.54 8.14 -2.39 -0.02 1.53 16 18 C -0.11 -1.68 5.29 30.67 0.16 -1.52 16 19 C -0.15 -2.00 6.08 30.65 0.19 -1.82 16 20 C 0.05 0.82 6.55 86.33 0.57 1.39 16 21 N -0.70 -14.49 6.87 -514.00 -3.53 -18.02 16 22 C 0.07 1.66 5.72 86.33 0.49 2.15 16 23 C -0.06 -2.76 9.67 22.22 0.21 -2.54 16 24 C -0.25 -12.59 9.80 22.73 0.22 -12.37 16 25 H 0.28 16.29 6.70 -92.70 -0.62 15.67 16 26 H 0.09 4.94 6.50 -2.91 -0.02 4.92 16 27 H 0.11 4.61 8.06 -2.91 -0.02 4.59 16 28 H 0.05 1.66 8.08 -2.38 -0.02 1.64 16 29 H 0.06 1.74 8.08 -2.39 -0.02 1.72 16 30 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 35 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 38 H 0.34 6.75 8.86 -89.69 -0.79 5.95 16 39 H 0.06 1.69 7.85 -2.39 -0.02 1.67 16 40 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.12 4.53 8.06 -2.91 -0.02 4.50 16 42 H 0.10 4.74 8.06 -2.91 -0.02 4.71 16 Total: -1.00 -61.84 339.45 1.10 -60.74 By element: Atomic # 1 Polarization: 32.86 SS G_CDS: 0.34 Total: 33.20 kcal Atomic # 6 Polarization: -65.63 SS G_CDS: 3.44 Total: -62.19 kcal Atomic # 7 Polarization: -59.50 SS G_CDS: -3.26 Total: -62.76 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: -1.47 Total: -15.05 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.06 Total: 46.06 kcal Total: -61.84 1.10 -60.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398974005.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.623 kcal (2) G-P(sol) polarization free energy of solvation -61.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds