Wall clock time and date at job start Mon Mar 30 2020 07:36:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86801 * 119.99864 * 2 1 4 4 H 1.48492 * 109.47271 * 274.65856 * 3 2 1 5 5 H 1.48504 * 109.47069 * 34.65932 * 3 2 1 6 6 H 1.48505 * 109.47177 * 154.65692 * 3 2 1 7 7 C 1.39936 * 120.00429 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00347 * 162.21537 * 7 2 1 9 9 C 1.41404 * 119.99757 * 342.21146 * 7 2 1 10 10 C 1.40789 * 120.21078 * 335.25736 * 9 7 2 11 11 C 1.37642 * 119.89632 * 179.97438 * 10 9 7 12 12 C 1.38532 * 120.32301 * 359.72299 * 11 10 9 13 13 C 1.39289 * 120.42183 * 0.55277 * 12 11 10 14 14 N 1.39688 * 119.94953 * 179.72130 * 13 12 11 15 15 C 1.46501 * 120.00066 * 359.72519 * 14 13 12 16 16 C 1.52991 * 109.47341 * 180.02562 * 15 14 13 17 17 C 1.53000 * 109.47392 * 180.02562 * 16 15 14 18 18 C 1.53004 * 109.47437 * 179.97438 * 17 16 15 19 19 H 1.09001 * 110.43665 * 305.70734 * 18 17 16 20 20 C 1.54804 * 110.59997 * 183.07837 * 18 17 16 21 21 C 1.54996 * 102.09237 * 220.38637 * 20 18 17 22 22 O 1.44385 * 103.48889 * 37.02926 * 21 20 18 23 23 C 1.43744 * 106.97052 * 319.93546 * 22 21 20 24 24 C 1.38319 * 120.10098 * 359.44908 * 13 12 11 25 25 H 0.96996 * 120.00417 * 0.02562 * 1 2 3 26 26 H 1.08001 * 120.05004 * 359.95141 * 10 9 7 27 27 H 1.07994 * 119.83807 * 180.02562 * 11 10 9 28 28 H 1.07999 * 119.78587 * 180.27404 * 12 11 10 29 29 H 0.96997 * 119.99960 * 179.73037 * 14 13 12 30 30 H 1.08998 * 109.46829 * 59.99850 * 15 14 13 31 31 H 1.09005 * 109.47042 * 300.00226 * 15 14 13 32 32 H 1.08998 * 109.47415 * 60.00046 * 16 15 14 33 33 H 1.09002 * 109.47327 * 300.00509 * 16 15 14 34 34 H 1.08998 * 109.46708 * 60.00141 * 17 16 15 35 35 H 1.08995 * 109.46941 * 299.99854 * 17 16 15 36 36 H 1.08994 * 110.91118 * 338.58511 * 20 18 17 37 37 H 1.09003 * 110.90356 * 102.19488 * 20 18 17 38 38 H 1.08997 * 110.62314 * 278.52647 * 21 20 18 39 39 H 1.08996 * 110.75524 * 155.58943 * 21 20 18 40 40 H 1.09007 * 109.88253 * 267.08666 * 23 22 21 41 41 H 1.09005 * 109.99968 * 146.00967 * 23 22 21 42 42 H 1.08002 * 120.16217 * 180.24874 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3913 2.1033 -1.3954 5 1 1.4923 2.6223 0.7962 6 1 3.5856 1.4138 0.5993 7 6 2.0080 -1.2118 0.0005 8 1 3.0493 -1.2343 -0.2851 9 6 1.3518 -2.4070 0.3752 10 6 0.2236 -2.3620 1.2163 11 6 -0.4106 -3.5293 1.5765 12 6 0.0523 -4.7492 1.1108 13 6 1.1706 -4.8097 0.2827 14 7 1.6323 -6.0455 -0.1765 15 6 0.9440 -7.2772 0.2179 16 6 1.6465 -8.4794 -0.4160 17 6 0.9273 -9.7656 -0.0047 18 6 1.6295 -10.9679 -0.6391 19 1 1.7057 -10.8381 -1.7186 20 6 0.8770 -12.2782 -0.3025 21 6 2.0435 -13.2616 -0.0293 22 8 3.0252 -12.4418 0.6406 23 6 3.0267 -11.1650 -0.0197 24 6 1.8213 -3.6475 -0.0903 25 1 -0.4850 0.8400 -0.0004 26 1 -0.1434 -1.4131 1.5786 27 1 -1.2761 -3.4937 2.2214 28 1 -0.4546 -5.6594 1.3953 29 1 2.4087 -6.0882 -0.7564 30 1 -0.0909 -7.2398 -0.1222 31 1 0.9665 -7.3744 1.3033 32 1 2.6813 -8.5166 -0.0756 33 1 1.6245 -8.3824 -1.5015 34 1 -0.1073 -9.7282 -0.3455 35 1 0.9491 -9.8629 1.0807 36 1 0.2572 -12.1538 0.5854 37 1 0.2778 -12.6113 -1.1500 38 1 2.4435 -13.6520 -0.9650 39 1 1.7183 -14.0765 0.6173 40 1 3.7845 -11.1538 -0.8033 41 1 3.2277 -10.3726 0.7013 42 1 2.6862 -3.6930 -0.7356 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400635944.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:36:51 Heat of formation + Delta-G solvation = -47.193738 kcal Electronic energy + Delta-G solvation = -20067.958263 eV Core-core repulsion = 17011.438020 eV Total energy + Delta-G solvation = -3056.520243 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.80156 -37.88482 -36.03092 -34.32704 -33.02523 -31.22421 -29.73670 -29.33634 -27.30736 -25.19716 -24.84620 -23.10378 -21.71147 -20.71864 -20.30915 -19.94439 -17.27645 -16.97297 -16.36114 -15.42289 -15.31871 -15.20948 -15.08398 -14.62382 -14.27235 -13.62599 -13.37161 -13.06542 -12.78827 -12.65870 -12.51241 -12.07629 -11.86633 -11.74032 -11.47750 -11.44209 -11.11164 -11.05313 -10.99168 -10.73987 -10.69023 -10.51109 -10.36932 -9.92538 -9.72998 -9.29680 -9.16981 -8.68962 -7.35364 -6.68530 -6.17752 -4.28136 2.87747 3.11260 3.16367 3.25112 3.40061 3.66207 3.98585 4.08621 4.26749 4.49088 4.57956 4.74805 4.85742 4.88577 4.98077 5.12251 5.19674 5.37533 5.42654 5.43420 5.55264 5.61376 5.69724 5.72375 5.83814 5.88229 5.96442 6.22653 6.24751 6.35949 6.58079 6.58697 7.06520 7.09168 7.14592 7.37342 7.43378 7.82057 7.94818 8.17375 8.27889 8.54133 8.67538 8.81923 9.02888 9.15245 10.27708 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.048340 B = 0.002539 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.087663 B =11026.045536 C =11370.272015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.077 3.923 3 Si 0.905 3.095 4 H -0.272 1.272 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.465 4.465 8 H 0.075 0.925 9 C 0.141 3.859 10 C -0.199 4.199 11 C -0.076 4.076 12 C -0.302 4.302 13 C 0.224 3.776 14 N -0.765 5.765 15 C 0.137 3.863 16 C -0.132 4.132 17 C -0.107 4.107 18 C -0.122 4.122 19 H 0.083 0.917 20 C -0.152 4.152 21 C 0.045 3.955 22 O -0.381 6.381 23 C 0.048 3.952 24 C -0.290 4.290 25 H 0.278 0.722 26 H 0.114 0.886 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.387 0.613 30 H 0.048 0.952 31 H 0.048 0.952 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.058 0.942 39 H 0.091 0.909 40 H 0.057 0.943 41 H 0.088 0.912 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.428 -19.009 -1.624 19.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.140 4.140 3 Si 0.729 3.271 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.495 4.495 8 H 0.093 0.907 9 C 0.138 3.862 10 C -0.219 4.219 11 C -0.095 4.095 12 C -0.325 4.325 13 C 0.125 3.875 14 N -0.398 5.398 15 C 0.012 3.988 16 C -0.170 4.170 17 C -0.145 4.145 18 C -0.141 4.141 19 H 0.102 0.898 20 C -0.190 4.190 21 C -0.032 4.032 22 O -0.300 6.300 23 C -0.029 4.029 24 C -0.314 4.314 25 H 0.089 0.911 26 H 0.132 0.868 27 H 0.103 0.897 28 H 0.103 0.897 29 H 0.220 0.780 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.076 0.924 39 H 0.109 0.891 40 H 0.075 0.925 41 H 0.107 0.893 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 1.214 -19.019 -1.364 19.106 hybrid contribution 0.408 0.835 -0.551 1.081 sum 1.621 -18.183 -1.915 18.355 Atomic orbital electron populations 1.69861 1.07548 1.28929 1.35447 1.25892 0.94676 1.01161 0.92293 0.86366 0.80811 0.80961 0.78931 1.19694 1.20103 1.18495 1.19537 0.98000 0.91281 1.40633 0.90670 1.17344 0.90309 0.91307 0.87261 1.21165 1.00626 0.96617 1.03519 1.20441 0.97725 0.92925 0.98381 1.19859 1.03190 0.96522 1.12904 1.17476 0.92976 0.84041 0.92986 1.44430 1.34799 1.02995 1.57623 1.21026 0.95798 0.83680 0.98339 1.21824 1.00051 0.93967 1.01136 1.21545 0.99493 0.92541 1.00882 1.22585 0.95082 0.95426 1.00983 0.89844 1.23217 0.98342 0.94705 1.02710 1.23547 0.87966 0.94306 0.97359 1.88879 1.60221 1.24404 1.56447 1.23337 0.96189 0.86301 0.97068 1.20404 1.06753 0.91598 1.12670 0.91076 0.86812 0.89672 0.89741 0.78033 0.93377 0.93363 0.91519 0.91543 0.91250 0.91236 0.90180 0.90220 0.92350 0.89098 0.92496 0.89344 0.89359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.06 10.97 55.55 0.61 -20.45 16 2 C 0.08 2.00 5.14 -17.34 -0.09 1.91 16 3 Si 0.90 19.05 29.59 -169.99 -5.03 14.02 16 4 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 5 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 6 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 7 C -0.46 -12.71 9.05 -37.74 -0.34 -13.05 16 8 H 0.08 1.98 7.91 -52.49 -0.41 1.56 16 9 C 0.14 3.90 5.57 -106.85 -0.60 3.30 16 10 C -0.20 -5.39 8.69 -38.84 -0.34 -5.72 16 11 C -0.08 -1.86 10.02 -39.69 -0.40 -2.26 16 12 C -0.30 -7.04 9.32 -39.08 -0.36 -7.40 16 13 C 0.22 5.15 6.64 -83.86 -0.56 4.59 16 14 N -0.76 -13.86 5.73 -58.69 -0.34 -14.19 16 15 C 0.14 2.00 4.91 -4.05 -0.02 1.98 16 16 C -0.13 -1.40 5.17 -26.74 -0.14 -1.54 16 17 C -0.11 -0.95 4.42 -26.73 -0.12 -1.07 16 18 C -0.12 -0.98 3.06 -89.09 -0.27 -1.25 16 19 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 20 C -0.15 -1.08 6.71 -24.73 -0.17 -1.24 16 21 C 0.04 0.34 7.72 38.21 0.29 0.64 16 22 O -0.38 -4.12 11.52 -35.23 -0.41 -4.53 16 23 C 0.05 0.44 6.94 37.73 0.26 0.70 16 24 C -0.29 -7.38 9.63 -38.67 -0.37 -7.75 16 25 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 26 H 0.11 3.17 6.17 -52.49 -0.32 2.84 16 27 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 28 H 0.08 1.78 6.70 -52.49 -0.35 1.43 16 29 H 0.39 6.35 8.48 -40.82 -0.35 6.00 16 30 H 0.05 0.73 7.93 -51.93 -0.41 0.32 16 31 H 0.05 0.73 7.95 -51.93 -0.41 0.32 16 32 H 0.07 0.69 6.99 -51.93 -0.36 0.33 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.58 7.88 -51.93 -0.41 0.17 16 37 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.09 0.83 6.83 -51.93 -0.35 0.48 16 42 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 LS Contribution 338.49 15.07 5.10 5.10 Total: -1.00 -29.69 338.49 -10.03 -39.71 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -6.75 Total: 8.51 kcal Atomic # 6 Polarization: -24.96 SS G_CDS: -3.21 Total: -28.18 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: 0.27 Total: -34.64 kcal Atomic # 8 Polarization: -4.12 SS G_CDS: -0.41 Total: -4.53 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.03 Total: 14.02 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.69 -10.03 -39.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400635944.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.483 kcal (2) G-P(sol) polarization free energy of solvation -29.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds