Wall clock time and date at job start Mon Mar 30 2020 07:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86801 * 119.99864 * 2 1 4 4 H 1.48492 * 109.47271 * 274.65856 * 3 2 1 5 5 H 1.48504 * 109.47069 * 34.65932 * 3 2 1 6 6 H 1.48505 * 109.47177 * 154.65692 * 3 2 1 7 7 C 1.39936 * 120.00429 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00347 * 162.21537 * 7 2 1 9 9 C 1.41404 * 119.99757 * 342.21146 * 7 2 1 10 10 C 1.40789 * 120.21078 * 335.25736 * 9 7 2 11 11 C 1.37642 * 119.89632 * 179.97438 * 10 9 7 12 12 C 1.38532 * 120.32301 * 359.72299 * 11 10 9 13 13 C 1.39289 * 120.42183 * 0.55277 * 12 11 10 14 14 N 1.39688 * 119.94953 * 179.72130 * 13 12 11 15 15 C 1.46501 * 120.00066 * 359.72519 * 14 13 12 16 16 C 1.52991 * 109.47341 * 180.02562 * 15 14 13 17 17 C 1.53000 * 109.47392 * 180.02562 * 16 15 14 18 18 C 1.53004 * 109.47437 * 179.97438 * 17 16 15 19 19 H 1.09001 * 110.43665 * 305.70734 * 18 17 16 20 20 C 1.54804 * 110.59997 * 183.07837 * 18 17 16 21 21 C 1.54996 * 102.09237 * 220.38637 * 20 18 17 22 22 O 1.44385 * 103.48889 * 37.02926 * 21 20 18 23 23 C 1.43744 * 106.97052 * 319.93546 * 22 21 20 24 24 C 1.38319 * 120.10098 * 359.44908 * 13 12 11 25 25 H 0.96996 * 120.00417 * 0.02562 * 1 2 3 26 26 H 1.08001 * 120.05004 * 359.95141 * 10 9 7 27 27 H 1.07994 * 119.83807 * 180.02562 * 11 10 9 28 28 H 1.07999 * 119.78587 * 180.27404 * 12 11 10 29 29 H 0.96997 * 119.99960 * 179.73037 * 14 13 12 30 30 H 1.08998 * 109.46829 * 59.99850 * 15 14 13 31 31 H 1.09005 * 109.47042 * 300.00226 * 15 14 13 32 32 H 1.08998 * 109.47415 * 60.00046 * 16 15 14 33 33 H 1.09002 * 109.47327 * 300.00509 * 16 15 14 34 34 H 1.08998 * 109.46708 * 60.00141 * 17 16 15 35 35 H 1.08995 * 109.46941 * 299.99854 * 17 16 15 36 36 H 1.08994 * 110.91118 * 338.58511 * 20 18 17 37 37 H 1.09003 * 110.90356 * 102.19488 * 20 18 17 38 38 H 1.08997 * 110.62314 * 278.52647 * 21 20 18 39 39 H 1.08996 * 110.75524 * 155.58943 * 21 20 18 40 40 H 1.09007 * 109.88253 * 267.08666 * 23 22 21 41 41 H 1.09005 * 109.99968 * 146.00967 * 23 22 21 42 42 H 1.08002 * 120.16217 * 180.24874 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3913 2.1033 -1.3954 5 1 1.4923 2.6223 0.7962 6 1 3.5856 1.4138 0.5993 7 6 2.0080 -1.2118 0.0005 8 1 3.0493 -1.2343 -0.2851 9 6 1.3518 -2.4070 0.3752 10 6 0.2236 -2.3620 1.2163 11 6 -0.4106 -3.5293 1.5765 12 6 0.0523 -4.7492 1.1108 13 6 1.1706 -4.8097 0.2827 14 7 1.6323 -6.0455 -0.1765 15 6 0.9440 -7.2772 0.2179 16 6 1.6465 -8.4794 -0.4160 17 6 0.9273 -9.7656 -0.0047 18 6 1.6295 -10.9679 -0.6391 19 1 1.7057 -10.8381 -1.7186 20 6 0.8770 -12.2782 -0.3025 21 6 2.0435 -13.2616 -0.0293 22 8 3.0252 -12.4418 0.6406 23 6 3.0267 -11.1650 -0.0197 24 6 1.8213 -3.6475 -0.0903 25 1 -0.4850 0.8400 -0.0004 26 1 -0.1434 -1.4131 1.5786 27 1 -1.2761 -3.4937 2.2214 28 1 -0.4546 -5.6594 1.3953 29 1 2.4087 -6.0882 -0.7564 30 1 -0.0909 -7.2398 -0.1222 31 1 0.9665 -7.3744 1.3033 32 1 2.6813 -8.5166 -0.0756 33 1 1.6245 -8.3824 -1.5015 34 1 -0.1073 -9.7282 -0.3455 35 1 0.9491 -9.8629 1.0807 36 1 0.2572 -12.1538 0.5854 37 1 0.2778 -12.6113 -1.1500 38 1 2.4435 -13.6520 -0.9650 39 1 1.7183 -14.0765 0.6173 40 1 3.7845 -11.1538 -0.8033 41 1 3.2277 -10.3726 0.7013 42 1 2.6862 -3.6930 -0.7356 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400635944.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:36:50 Heat of formation + Delta-G solvation = -63.757026 kcal Electronic energy + Delta-G solvation = -20068.676501 eV Core-core repulsion = 17011.438020 eV Total energy + Delta-G solvation = -3057.238481 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.163 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.47669 -39.64997 -37.35390 -35.72407 -34.59853 -32.21538 -31.66885 -30.31877 -28.67676 -27.14464 -25.94814 -23.95792 -22.91119 -22.23880 -21.64381 -21.13904 -19.13786 -17.65185 -17.31543 -17.14549 -16.70459 -16.34028 -16.17182 -16.02309 -15.77248 -14.80146 -14.57866 -14.39137 -14.07566 -13.95728 -13.64581 -13.52108 -13.36576 -12.95550 -12.76334 -12.67673 -12.41300 -12.28908 -12.20186 -12.01690 -11.79284 -11.59964 -11.49931 -11.39803 -11.21200 -11.03524 -10.60368 -10.44559 -9.34131 -8.61025 -7.94200 -6.32609 1.04537 1.33973 1.39286 1.52612 1.59840 2.22936 2.78463 2.80971 3.05566 3.59906 3.70105 3.85039 3.94545 4.12598 4.22166 4.27687 4.32574 4.44092 4.51103 4.64040 4.68814 4.74820 4.79872 4.81885 4.90949 4.94117 4.99512 5.05893 5.13059 5.16501 5.19596 5.24253 5.33394 5.38512 5.41998 5.60871 5.94631 5.95798 6.02582 6.20010 6.30604 6.62457 6.89197 7.02022 7.06179 7.25648 8.37579 Molecular weight = 275.16amu Principal moments of inertia in cm(-1) A = 0.048340 B = 0.002539 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.087663 B =11026.045536 C =11370.272015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.035 3.965 3 Si 0.982 3.018 4 H -0.262 1.262 5 H -0.265 1.265 6 H -0.260 1.260 7 C -0.503 4.503 8 H 0.072 0.928 9 C 0.111 3.889 10 C -0.232 4.232 11 C -0.076 4.076 12 C -0.305 4.305 13 C 0.232 3.768 14 N -0.756 5.756 15 C 0.133 3.867 16 C -0.120 4.120 17 C -0.100 4.100 18 C -0.118 4.118 19 H 0.094 0.906 20 C -0.149 4.149 21 C 0.038 3.962 22 O -0.409 6.409 23 C 0.043 3.957 24 C -0.314 4.314 25 H 0.287 0.713 26 H 0.096 0.904 27 H 0.108 0.892 28 H 0.111 0.889 29 H 0.396 0.604 30 H 0.047 0.953 31 H 0.046 0.954 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.064 0.936 36 H 0.077 0.923 37 H 0.097 0.903 38 H 0.069 0.931 39 H 0.101 0.899 40 H 0.062 0.938 41 H 0.081 0.919 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.396 -20.304 -2.146 20.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.180 4.180 3 Si 0.803 3.197 4 H -0.186 1.186 5 H -0.189 1.189 6 H -0.183 1.183 7 C -0.532 4.532 8 H 0.091 0.909 9 C 0.108 3.892 10 C -0.253 4.253 11 C -0.095 4.095 12 C -0.329 4.329 13 C 0.130 3.870 14 N -0.388 5.388 15 C 0.009 3.991 16 C -0.158 4.158 17 C -0.138 4.138 18 C -0.136 4.136 19 H 0.112 0.888 20 C -0.186 4.186 21 C -0.038 4.038 22 O -0.329 6.329 23 C -0.033 4.033 24 C -0.338 4.338 25 H 0.098 0.902 26 H 0.114 0.886 27 H 0.126 0.874 28 H 0.129 0.871 29 H 0.230 0.770 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.115 0.885 38 H 0.087 0.913 39 H 0.119 0.881 40 H 0.081 0.919 41 H 0.099 0.901 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.184 -20.371 -1.899 20.493 hybrid contribution 0.384 1.060 -0.387 1.192 sum 1.568 -19.311 -2.286 19.509 Atomic orbital electron populations 1.69916 1.09050 1.30390 1.35613 1.26785 0.95498 1.04535 0.91187 0.85204 0.79159 0.75973 0.79388 1.18637 1.18948 1.18349 1.19798 0.98202 0.92619 1.42595 0.90944 1.17726 0.91038 0.92504 0.87900 1.21105 1.01924 0.96878 1.05400 1.20738 0.97983 0.92677 0.98082 1.20166 1.03235 0.97033 1.12418 1.17562 0.92266 0.85261 0.91905 1.44543 1.34924 1.02555 1.56794 1.21244 0.95923 0.83421 0.98557 1.21733 0.99964 0.92888 1.01220 1.21483 0.99713 0.91955 1.00694 1.22550 0.94354 0.95388 1.01333 0.88802 1.23215 0.98142 0.93912 1.03336 1.23748 0.87659 0.94422 0.97931 1.88847 1.61290 1.25287 1.57471 1.23404 0.97168 0.85745 0.97013 1.20538 1.07542 0.92076 1.13630 0.90246 0.88576 0.87380 0.87083 0.76992 0.93493 0.93597 0.91139 0.90799 0.90605 0.91709 0.90413 0.88467 0.91301 0.88092 0.91938 0.90087 0.89080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -44.82 10.97 21.82 0.24 -44.58 16 2 C 0.03 1.83 5.14 85.25 0.44 2.26 16 3 Si 0.98 39.45 29.59 68.60 2.03 41.48 16 4 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 5 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 6 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 7 C -0.50 -28.43 9.05 23.46 0.21 -28.21 16 8 H 0.07 3.96 7.91 -2.91 -0.02 3.93 16 9 C 0.11 6.36 5.57 -21.31 -0.12 6.24 16 10 C -0.23 -12.98 8.69 22.75 0.20 -12.78 16 11 C -0.08 -3.73 10.02 22.20 0.22 -3.51 16 12 C -0.31 -13.92 9.32 22.59 0.21 -13.71 16 13 C 0.23 10.52 6.64 38.16 0.25 10.77 16 14 N -0.76 -26.19 5.73 -339.59 -1.95 -28.13 16 15 C 0.13 3.57 4.91 86.38 0.42 4.00 16 16 C -0.12 -2.26 5.17 30.59 0.16 -2.10 16 17 C -0.10 -1.55 4.42 30.60 0.14 -1.41 16 18 C -0.12 -1.59 3.06 -9.80 -0.03 -1.62 16 19 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 20 C -0.15 -1.72 6.71 31.89 0.21 -1.51 16 21 C 0.04 0.51 7.72 72.66 0.56 1.07 16 22 O -0.41 -8.36 11.52 -148.98 -1.72 -10.07 16 23 C 0.04 0.72 6.94 72.35 0.50 1.23 16 24 C -0.31 -16.22 9.63 22.86 0.22 -16.00 16 25 H 0.29 14.03 8.30 -92.71 -0.77 13.26 16 26 H 0.10 5.59 6.17 -2.91 -0.02 5.57 16 27 H 0.11 4.67 8.06 -2.91 -0.02 4.65 16 28 H 0.11 4.41 6.70 -2.91 -0.02 4.39 16 29 H 0.40 12.35 8.48 -92.71 -0.79 11.57 16 30 H 0.05 1.31 7.93 -2.39 -0.02 1.29 16 31 H 0.05 1.29 7.95 -2.38 -0.02 1.27 16 32 H 0.07 1.30 6.99 -2.39 -0.02 1.28 16 33 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.08 0.95 7.88 -2.39 -0.02 0.93 16 37 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 41 H 0.08 1.44 6.83 -2.38 -0.02 1.42 16 42 H 0.09 4.49 8.06 -2.91 -0.02 4.47 16 Total: -1.00 -65.19 338.49 2.42 -62.77 By element: Atomic # 1 Polarization: 33.61 SS G_CDS: 0.21 Total: 33.83 kcal Atomic # 6 Polarization: -58.88 SS G_CDS: 3.60 Total: -55.28 kcal Atomic # 7 Polarization: -71.01 SS G_CDS: -1.71 Total: -72.72 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: -1.72 Total: -10.07 kcal Atomic # 14 Polarization: 39.45 SS G_CDS: 2.03 Total: 41.48 kcal Total: -65.19 2.42 -62.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400635944.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.990 kcal (2) G-P(sol) polarization free energy of solvation -65.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds