Wall clock time and date at job start Mon Mar 30 2020 06:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47069 * 2 1 4 4 H 1.08999 * 109.46717 * 302.56379 * 3 2 1 5 5 C 1.52995 * 109.47223 * 182.56151 * 3 2 1 6 6 C 1.52993 * 109.47323 * 65.00044 * 5 3 2 7 7 F 1.39899 * 109.47241 * 64.99944 * 6 5 3 8 8 F 1.39908 * 109.47204 * 184.99828 * 6 5 3 9 9 C 1.50700 * 109.47059 * 62.55645 * 3 2 1 10 10 O 1.21287 * 119.99790 * 111.07241 * 9 3 2 11 11 N 1.34780 * 120.00433 * 291.07945 * 9 3 2 12 12 C 1.46497 * 120.00221 * 176.10731 * 11 9 3 13 13 C 1.53001 * 109.47252 * 185.10850 * 12 11 9 14 14 C 1.50698 * 115.55027 * 305.05311 * 13 12 11 15 15 H 1.07991 * 120.00500 * 145.11462 * 14 13 12 16 16 C 1.37882 * 119.99613 * 325.11257 * 14 13 12 17 17 N 1.31513 * 120.00070 * 167.91124 * 16 14 13 18 18 Si 1.86799 * 120.00294 * 347.90587 * 16 14 13 19 19 H 1.48500 * 109.47222 * 94.52044 * 18 16 14 20 20 H 1.48499 * 109.47164 * 214.52437 * 18 16 14 21 21 H 1.48506 * 109.46938 * 334.52460 * 18 16 14 22 22 C 1.52990 * 117.50037 * 159.37477 * 13 12 11 23 23 C 1.53004 * 117.49893 * 90.71408 * 13 12 11 24 24 H 1.09002 * 109.46864 * 177.49388 * 1 2 3 25 25 H 1.08999 * 109.47249 * 57.49459 * 1 2 3 26 26 H 1.09003 * 109.47490 * 297.48449 * 1 2 3 27 27 H 1.09003 * 109.47671 * 119.99569 * 2 1 3 28 28 H 1.08998 * 109.47617 * 239.99848 * 2 1 3 29 29 H 1.09001 * 109.47087 * 185.00281 * 5 3 2 30 30 H 1.09006 * 109.47107 * 304.99427 * 5 3 2 31 31 H 1.09006 * 109.46875 * 304.99577 * 6 5 3 32 32 H 0.97005 * 119.99538 * 356.10341 * 11 9 3 33 33 H 1.08998 * 109.46807 * 305.10622 * 12 11 9 34 34 H 1.09004 * 109.47306 * 65.10747 * 12 11 9 35 35 H 0.96995 * 120.00515 * 179.97438 * 17 16 14 36 36 H 1.09007 * 117.50097 * 0.02562 * 22 13 12 37 37 H 1.09001 * 117.49897 * 145.01723 * 22 13 12 38 38 H 1.08991 * 117.50049 * 214.98072 * 23 13 12 39 39 H 1.09002 * 117.49341 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6395 1.9694 -0.8661 5 6 3.5686 1.4431 -0.0645 6 6 4.0229 0.8532 -1.4010 7 9 3.6082 1.6880 -2.4442 8 9 5.4179 0.7482 -1.4143 9 6 1.5900 2.1344 1.2609 10 8 2.4025 2.4392 2.1083 11 7 0.2848 2.4144 1.4471 12 6 -0.1641 3.0092 2.7083 13 6 -1.6910 3.1067 2.7113 14 6 -2.2976 3.8429 1.5447 15 1 -3.2457 3.5233 1.1383 16 6 -1.6420 4.9248 0.9961 17 7 -2.0388 5.4191 -0.1562 18 14 -0.1902 5.6885 1.8896 19 1 1.0727 5.1000 1.3758 20 1 -0.1827 7.1554 1.6585 21 1 -0.3064 5.4173 3.3451 22 6 -2.3881 3.2348 4.0671 23 6 -2.4734 1.9227 3.2833 24 1 -0.3633 -1.0267 -0.0449 25 1 -0.3634 0.5522 -0.8667 26 1 -0.3634 0.4743 0.9117 27 1 1.8934 -0.5138 0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 3.9356 2.4655 0.0250 30 1 3.9669 0.8413 0.7525 31 1 3.5828 -0.1357 -1.5300 32 1 -0.3572 2.2220 0.7459 33 1 0.1617 2.3853 3.5406 34 1 0.2638 4.0063 2.8124 35 1 -1.5779 6.1803 -0.5419 36 1 -1.7589 3.2501 4.9572 37 1 -3.2856 3.8514 4.1153 38 1 -3.4269 1.6767 2.8162 39 1 -1.9002 1.0743 3.6571 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457786708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:56 Heat of formation + Delta-G solvation = -138.375824 kcal Electronic energy + Delta-G solvation = -22533.243397 eV Core-core repulsion = 18918.539673 eV Total energy + Delta-G solvation = -3614.703724 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.144 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.92335 -47.94082 -41.23779 -38.85580 -36.68044 -35.13235 -34.37798 -32.02110 -29.16020 -27.77096 -26.69400 -24.03034 -23.16620 -22.64271 -21.36605 -20.72040 -18.93945 -18.46743 -18.30611 -17.93774 -17.61623 -16.83799 -16.71509 -16.36410 -15.49940 -15.10862 -14.98196 -14.89552 -14.71510 -14.38705 -14.34423 -14.21807 -13.99948 -13.93494 -13.45348 -13.04951 -12.76645 -12.56939 -12.32215 -12.15389 -12.05551 -11.83194 -11.78162 -11.67186 -11.47943 -11.31888 -10.85202 -10.72553 -10.38897 -9.80517 -8.40663 -6.34134 1.24180 1.32742 1.34398 1.59738 2.15832 2.22258 2.81046 2.95712 3.27097 3.38709 3.46911 3.57768 3.82916 3.91482 3.96122 4.10316 4.16704 4.29640 4.43581 4.48209 4.49549 4.57150 4.64296 4.77966 4.92533 4.93637 4.95664 4.98153 5.10482 5.21597 5.23625 5.46437 5.48484 5.54255 5.63823 6.27227 6.59236 6.70690 7.23113 7.26439 8.74024 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.020438 B = 0.005945 C = 0.005480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.646239 B = 4708.612528 C = 5107.810808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.109 4.109 3 C -0.106 4.106 4 H 0.104 0.896 5 C -0.149 4.149 6 C 0.262 3.738 7 F -0.219 7.219 8 F -0.216 7.216 9 C 0.508 3.492 10 O -0.592 6.592 11 N -0.700 5.700 12 C 0.139 3.861 13 C -0.038 4.038 14 C -0.476 4.476 15 H 0.052 0.948 16 C 0.050 3.950 17 N -0.924 5.924 18 Si 0.930 3.070 19 H -0.288 1.288 20 H -0.309 1.309 21 H -0.253 1.253 22 C -0.195 4.195 23 C -0.157 4.157 24 H 0.081 0.919 25 H 0.058 0.942 26 H 0.053 0.947 27 H 0.079 0.921 28 H 0.107 0.893 29 H 0.066 0.934 30 H 0.112 0.888 31 H 0.158 0.842 32 H 0.417 0.583 33 H 0.071 0.929 34 H 0.035 0.965 35 H 0.266 0.734 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.921 -13.751 -0.688 15.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.146 4.146 3 C -0.127 4.127 4 H 0.122 0.878 5 C -0.187 4.187 6 C 0.209 3.791 7 F -0.200 7.200 8 F -0.198 7.198 9 C 0.295 3.705 10 O -0.474 6.474 11 N -0.352 5.352 12 C 0.016 3.984 13 C -0.039 4.039 14 C -0.514 4.514 15 H 0.070 0.930 16 C -0.151 4.151 17 N -0.562 5.562 18 Si 0.762 3.238 19 H -0.216 1.216 20 H -0.238 1.238 21 H -0.179 1.179 22 C -0.233 4.233 23 C -0.194 4.194 24 H 0.100 0.900 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.098 0.902 28 H 0.125 0.875 29 H 0.085 0.915 30 H 0.130 0.870 31 H 0.175 0.825 32 H 0.257 0.743 33 H 0.089 0.911 34 H 0.052 0.948 35 H 0.076 0.924 36 H 0.108 0.892 37 H 0.102 0.898 38 H 0.104 0.896 39 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 8.497 -13.385 -0.264 15.857 hybrid contribution 0.288 1.324 -0.048 1.356 sum 8.785 -12.061 -0.312 14.925 Atomic orbital electron populations 1.22139 0.95135 1.03571 1.02524 1.21625 0.96764 0.91455 1.04752 1.21373 0.95746 0.99883 0.95704 0.87825 1.22399 0.95070 1.03992 0.97262 1.22343 0.75639 0.96264 0.84824 1.92974 1.89973 1.75690 1.61406 1.92963 1.32883 1.97023 1.96907 1.21081 0.81952 0.78447 0.88980 1.90624 1.53570 1.55739 1.47420 1.46336 1.08611 1.61380 1.18885 1.21187 0.94143 0.96506 0.86569 1.19447 0.89263 1.01166 0.94003 1.20414 1.06267 1.12216 1.12480 0.92983 1.25347 0.98501 0.96973 0.94253 1.69986 1.43241 1.25568 1.17424 0.86301 0.80700 0.76034 0.80743 1.21565 1.23795 1.17877 1.23138 1.03290 1.01322 0.95568 1.22867 1.01806 0.91112 1.03657 0.90017 0.92327 0.92784 0.90239 0.87459 0.91471 0.86994 0.82483 0.74329 0.91093 0.94789 0.92420 0.89168 0.89850 0.89577 0.88154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.64 8.73 71.98 0.63 -3.01 16 2 C -0.11 -1.95 5.24 30.60 0.16 -1.79 16 3 C -0.11 -2.73 2.23 -11.54 -0.03 -2.76 16 4 H 0.10 2.74 7.82 -2.39 -0.02 2.73 16 5 C -0.15 -3.54 4.21 30.59 0.13 -3.41 16 6 C 0.26 5.05 5.16 71.98 0.37 5.42 16 7 F -0.22 -5.40 16.93 44.97 0.76 -4.64 16 8 F -0.22 -4.90 17.34 44.97 0.78 -4.12 16 9 C 0.51 18.33 6.91 87.66 0.61 18.94 16 10 O -0.59 -25.20 16.03 -3.05 -0.05 -25.25 16 11 N -0.70 -26.66 3.54 -463.05 -1.64 -28.29 16 12 C 0.14 5.77 4.35 86.38 0.38 6.15 16 13 C -0.04 -1.58 1.48 -52.93 -0.08 -1.66 16 14 C -0.48 -24.34 8.84 25.60 0.23 -24.12 16 15 H 0.05 2.92 8.06 -2.92 -0.02 2.90 16 16 C 0.05 2.69 5.35 84.66 0.45 3.14 16 17 N -0.92 -53.57 13.96 21.45 0.30 -53.27 16 18 Si 0.93 46.02 23.81 68.60 1.63 47.65 16 19 H -0.29 -14.71 7.11 99.48 0.71 -14.00 16 20 H -0.31 -15.56 7.11 99.48 0.71 -14.85 16 21 H -0.25 -11.94 6.41 99.48 0.64 -11.30 16 22 C -0.19 -7.23 9.96 30.61 0.30 -6.93 16 23 C -0.16 -5.41 9.93 30.62 0.30 -5.11 16 24 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.05 1.38 5.46 -2.39 -0.01 1.36 16 27 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.11 1.18 6.35 -2.39 -0.02 1.16 16 29 H 0.07 1.96 8.09 -2.39 -0.02 1.94 16 30 H 0.11 2.45 8.13 -2.38 -0.02 2.43 16 31 H 0.16 1.64 6.29 -2.38 -0.02 1.63 16 32 H 0.42 15.55 5.85 -92.70 -0.54 15.01 16 33 H 0.07 2.71 8.09 -2.39 -0.02 2.69 16 34 H 0.03 1.60 2.55 -2.39 -0.01 1.60 16 35 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 36 H 0.09 3.00 8.14 -2.38 -0.02 2.98 16 37 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16 38 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 39 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 Total: -1.00 -65.50 316.61 5.70 -59.81 By element: Atomic # 1 Polarization: 22.79 SS G_CDS: 0.45 Total: 23.24 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: 3.45 Total: -15.14 kcal Atomic # 7 Polarization: -80.23 SS G_CDS: -1.34 Total: -81.56 kcal Atomic # 8 Polarization: -25.20 SS G_CDS: -0.05 Total: -25.25 kcal Atomic # 9 Polarization: -10.30 SS G_CDS: 1.54 Total: -8.76 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 1.63 Total: 47.65 kcal Total: -65.50 5.70 -59.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457786708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.568 kcal (2) G-P(sol) polarization free energy of solvation -65.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds