Wall clock time and date at job start Mon Mar 30 2020 07:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47180 * 2 1 4 4 C 1.50706 * 109.47214 * 119.99716 * 2 1 3 5 5 H 1.07991 * 120.00029 * 119.99294 * 4 2 1 6 6 C 1.37882 * 119.99532 * 300.00029 * 4 2 1 7 7 N 1.31512 * 120.00387 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99720 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46934 * 60.00177 * 8 6 4 10 10 H 1.48497 * 109.47376 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47352 * 300.00323 * 8 6 4 12 12 C 1.50699 * 109.47117 * 239.99346 * 2 1 3 13 13 O 1.21279 * 120.00110 * 245.50051 * 12 2 1 14 14 N 1.34777 * 119.99841 * 65.77821 * 12 2 1 15 15 C 1.46504 * 119.99897 * 4.73172 * 14 12 2 16 16 C 1.53000 * 109.47294 * 96.16592 * 15 14 12 17 17 F 1.39896 * 109.47147 * 300.00158 * 16 15 14 18 18 F 1.39899 * 109.46731 * 60.00183 * 16 15 14 19 19 C 1.46500 * 120.00005 * 184.73040 * 14 12 2 20 20 C 1.52997 * 109.47152 * 89.99987 * 19 14 12 21 21 C 1.53779 * 113.61609 * 274.13618 * 20 19 14 22 22 C 1.53953 * 87.02068 * 220.04969 * 21 20 19 23 23 C 1.53777 * 87.11279 * 25.35985 * 22 21 20 24 24 H 1.09000 * 109.46887 * 68.47471 * 1 2 3 25 25 H 1.08998 * 109.47260 * 188.47027 * 1 2 3 26 26 H 1.09002 * 109.47272 * 308.47619 * 1 2 3 27 27 H 0.96999 * 120.00050 * 179.97438 * 7 6 4 28 28 H 1.09000 * 109.46991 * 216.16997 * 15 14 12 29 29 H 1.08999 * 109.46862 * 336.16644 * 15 14 12 30 30 H 1.09000 * 109.46787 * 179.97438 * 16 15 14 31 31 H 1.09006 * 109.47048 * 210.00078 * 19 14 12 32 32 H 1.08998 * 109.47304 * 329.99760 * 19 14 12 33 33 H 1.08998 * 112.85201 * 45.33331 * 20 19 14 34 34 H 1.09004 * 113.61271 * 334.57187 * 21 20 19 35 35 H 1.08999 * 113.61421 * 105.46363 * 21 20 19 36 36 H 1.09000 * 113.53240 * 270.80756 * 22 21 20 37 37 H 1.08999 * 113.66382 * 139.93313 * 22 21 20 38 38 H 1.08997 * 113.61623 * 220.08967 * 23 22 21 39 39 H 1.09008 * 113.69094 * 89.19714 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6531 -1.5885 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9435 0.8304 2.6034 8 14 2.3213 -1.1200 4.0081 9 1 3.8063 -1.1206 4.0083 10 1 1.8269 -0.4196 5.2205 11 1 1.8258 -2.5200 4.0080 12 6 2.0323 -0.7105 -1.2304 13 8 2.6451 -1.7515 -1.1218 14 7 1.8054 -0.1863 -2.4511 15 6 1.1626 1.1241 -2.5776 16 6 2.2338 2.2039 -2.7426 17 9 3.0736 2.2026 -1.6238 18 9 2.9874 1.9413 -3.8917 19 6 2.2017 -0.9268 -3.6515 20 6 1.0463 -1.8223 -4.1029 21 6 1.0174 -3.1908 -3.4020 22 6 0.6301 -3.7912 -4.7657 23 6 1.3302 -2.5826 -5.4091 24 1 -0.3633 0.3771 -0.9560 25 1 -0.3634 -1.0164 0.1514 26 1 -0.3634 0.6394 0.8045 27 1 0.7089 1.1616 3.4844 28 1 0.5082 1.1251 -3.4494 29 1 0.5754 1.3286 -1.6824 30 1 1.7554 3.1788 -2.8372 31 1 2.4488 -0.2237 -4.4470 32 1 3.0727 -1.5426 -3.4275 33 1 0.0851 -1.3084 -4.0970 34 1 1.9930 -3.5177 -3.0421 35 1 0.2358 -3.2784 -2.6473 36 1 -0.4455 -3.8167 -4.9403 37 1 1.1173 -4.7426 -4.9790 38 1 0.8007 -2.1801 -6.2726 39 1 2.3916 -2.7417 -5.5998 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597452702.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:12 Heat of formation + Delta-G solvation = -121.826900 kcal Electronic energy + Delta-G solvation = -22984.025759 eV Core-core repulsion = 19370.039650 eV Total energy + Delta-G solvation = -3613.986109 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.144 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.62815 -46.63033 -39.56392 -38.04421 -34.98189 -33.76859 -30.79595 -29.61200 -27.45537 -25.39482 -25.20096 -23.43673 -23.04048 -21.43502 -19.22260 -18.70199 -17.27840 -17.00833 -16.41214 -16.28092 -15.69489 -15.23608 -14.91906 -14.70381 -14.36481 -13.75002 -13.51357 -13.08915 -12.95883 -12.74505 -12.70771 -12.25362 -12.22034 -12.00820 -11.87018 -11.52292 -11.08910 -10.96211 -10.88905 -10.74728 -10.63367 -10.41864 -10.23967 -10.18426 -10.00582 -9.90731 -8.95049 -8.55177 -8.30544 -8.09188 -6.00745 -4.01794 3.38499 3.40491 3.42944 3.51011 3.63949 4.12473 4.48085 4.49955 4.70670 4.77278 4.84100 4.91961 4.99614 5.07754 5.33836 5.50366 5.55112 5.61256 5.69539 5.76483 5.82511 5.94886 5.96979 6.07740 6.24813 6.33056 6.45281 6.56694 6.69300 6.82414 6.90701 7.07257 7.48472 7.73511 7.97296 8.06588 8.39829 9.05413 9.22358 9.62803 11.07948 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.016837 B = 0.006801 C = 0.005360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.632449 B = 4115.950800 C = 5222.640064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.025 3.975 3 H 0.058 0.942 4 C -0.499 4.499 5 H 0.072 0.928 6 C 0.060 3.940 7 N -0.898 5.898 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.527 3.473 13 O -0.533 6.533 14 N -0.623 5.623 15 C 0.052 3.948 16 C 0.241 3.759 17 F -0.192 7.192 18 F -0.211 7.211 19 C 0.121 3.879 20 C -0.125 4.125 21 C -0.127 4.127 22 C -0.145 4.145 23 C -0.132 4.132 24 H 0.017 0.983 25 H 0.036 0.964 26 H 0.089 0.911 27 H 0.260 0.740 28 H 0.095 0.905 29 H 0.132 0.868 30 H 0.111 0.889 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.062 0.938 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.043 1.584 -14.919 15.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.004 3.996 3 H 0.076 0.924 4 C -0.537 4.537 5 H 0.090 0.910 6 C -0.141 4.141 7 N -0.537 5.537 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.203 1.203 12 C 0.319 3.681 13 O -0.407 6.407 14 N -0.358 5.358 15 C -0.074 4.074 16 C 0.185 3.815 17 F -0.174 7.174 18 F -0.193 7.193 19 C -0.002 4.002 20 C -0.144 4.144 21 C -0.164 4.164 22 C -0.182 4.182 23 C -0.170 4.170 24 H 0.035 0.965 25 H 0.055 0.945 26 H 0.108 0.892 27 H 0.070 0.930 28 H 0.113 0.887 29 H 0.149 0.851 30 H 0.128 0.872 31 H 0.091 0.909 32 H 0.099 0.901 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.729 1.094 -14.680 14.972 hybrid contribution 0.331 -0.271 0.760 0.872 sum -2.398 0.823 -13.920 14.149 Atomic orbital electron populations 1.21918 0.96724 1.01524 0.99106 1.18940 0.93788 0.97442 0.89402 0.92407 1.21079 1.31019 1.12631 0.89016 0.90976 1.24916 0.95135 0.95043 0.98996 1.69864 1.37240 1.23054 1.23556 0.86535 0.79317 0.79704 0.81745 1.20229 1.21395 1.20263 1.22012 0.77052 0.85036 0.84030 1.90510 1.39852 1.24441 1.85946 1.48056 1.62720 1.18253 1.06783 1.22996 0.94254 0.83283 1.06818 1.22623 0.85648 1.01422 0.71781 1.93053 1.74079 1.97776 1.52443 1.92926 1.79419 1.95762 1.51154 1.21461 0.96921 0.94892 0.86918 1.22939 0.99456 0.95804 0.96248 1.22920 1.02600 0.95247 0.95638 1.22860 1.00101 0.97577 0.97666 1.22858 1.00812 0.96923 0.96422 0.96487 0.94479 0.89245 0.92991 0.88671 0.85059 0.87156 0.90906 0.90060 0.89621 0.89457 0.91898 0.90702 0.91846 0.91876 0.90187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 8.33 37.16 0.31 -2.70 16 2 C 0.03 0.62 1.80 -92.92 -0.17 0.46 16 3 H 0.06 1.48 6.29 -51.93 -0.33 1.16 16 4 C -0.50 -14.26 8.36 -34.44 -0.29 -14.55 16 5 H 0.07 2.18 6.77 -52.49 -0.36 1.83 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 7 N -0.90 -25.08 11.42 55.43 0.63 -24.44 16 8 Si 0.90 22.07 29.54 -169.99 -5.02 17.05 16 9 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 C 0.53 12.02 6.78 -10.99 -0.07 11.95 16 13 O -0.53 -13.78 14.55 5.56 0.08 -13.70 16 14 N -0.62 -11.02 2.39 -173.69 -0.42 -11.43 16 15 C 0.05 0.72 5.04 -4.04 -0.02 0.70 16 16 C 0.24 3.26 5.60 37.16 0.21 3.47 16 17 F -0.19 -3.53 15.68 2.25 0.04 -3.49 16 18 F -0.21 -3.02 15.68 2.25 0.04 -2.99 16 19 C 0.12 1.87 5.06 -4.04 -0.02 1.85 16 20 C -0.12 -1.70 3.96 -89.81 -0.36 -2.05 16 21 C -0.13 -1.91 7.29 -25.83 -0.19 -2.10 16 22 C -0.14 -1.70 8.09 -25.83 -0.21 -1.91 16 23 C -0.13 -1.48 7.65 -25.92 -0.20 -1.68 16 24 H 0.02 0.30 5.40 -51.93 -0.28 0.02 16 25 H 0.04 0.86 8.12 -51.93 -0.42 0.44 16 26 H 0.09 2.16 6.35 -51.93 -0.33 1.83 16 27 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 28 H 0.10 0.98 8.12 -51.93 -0.42 0.56 16 29 H 0.13 1.95 4.09 -51.93 -0.21 1.74 16 30 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.07 0.99 6.70 -51.93 -0.35 0.65 16 32 H 0.08 1.43 7.09 -51.93 -0.37 1.06 16 33 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.09 1.49 7.79 -51.93 -0.40 1.09 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.08 0.88 8.10 -51.92 -0.42 0.45 16 LS Contribution 315.82 15.07 4.76 4.76 Total: -1.00 -31.77 315.82 -6.55 -38.32 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -5.56 Total: 0.92 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: -1.10 Total: -4.99 kcal Atomic # 7 Polarization: -36.09 SS G_CDS: 0.22 Total: -35.88 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: 0.08 Total: -13.70 kcal Atomic # 9 Polarization: -6.55 SS G_CDS: 0.07 Total: -6.48 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.77 -6.55 -38.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597452702.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.511 kcal (2) G-P(sol) polarization free energy of solvation -31.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds