Wall clock time and date at job start Mon Mar 30 2020 07:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47180 * 2 1 4 4 C 1.50706 * 109.47214 * 119.99716 * 2 1 3 5 5 H 1.07991 * 120.00029 * 119.99294 * 4 2 1 6 6 C 1.37882 * 119.99532 * 300.00029 * 4 2 1 7 7 N 1.31512 * 120.00387 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99720 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.46934 * 60.00177 * 8 6 4 10 10 H 1.48497 * 109.47376 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47352 * 300.00323 * 8 6 4 12 12 C 1.50699 * 109.47117 * 239.99346 * 2 1 3 13 13 O 1.21279 * 120.00110 * 245.50051 * 12 2 1 14 14 N 1.34777 * 119.99841 * 65.77821 * 12 2 1 15 15 C 1.46504 * 119.99897 * 4.73172 * 14 12 2 16 16 C 1.53000 * 109.47294 * 96.16592 * 15 14 12 17 17 F 1.39896 * 109.47147 * 300.00158 * 16 15 14 18 18 F 1.39899 * 109.46731 * 60.00183 * 16 15 14 19 19 C 1.46500 * 120.00005 * 184.73040 * 14 12 2 20 20 C 1.52997 * 109.47152 * 89.99987 * 19 14 12 21 21 C 1.53779 * 113.61609 * 274.13618 * 20 19 14 22 22 C 1.53953 * 87.02068 * 220.04969 * 21 20 19 23 23 C 1.53777 * 87.11279 * 25.35985 * 22 21 20 24 24 H 1.09000 * 109.46887 * 68.47471 * 1 2 3 25 25 H 1.08998 * 109.47260 * 188.47027 * 1 2 3 26 26 H 1.09002 * 109.47272 * 308.47619 * 1 2 3 27 27 H 0.96999 * 120.00050 * 179.97438 * 7 6 4 28 28 H 1.09000 * 109.46991 * 216.16997 * 15 14 12 29 29 H 1.08999 * 109.46862 * 336.16644 * 15 14 12 30 30 H 1.09000 * 109.46787 * 179.97438 * 16 15 14 31 31 H 1.09006 * 109.47048 * 210.00078 * 19 14 12 32 32 H 1.08998 * 109.47304 * 329.99760 * 19 14 12 33 33 H 1.08998 * 112.85201 * 45.33331 * 20 19 14 34 34 H 1.09004 * 113.61271 * 334.57187 * 21 20 19 35 35 H 1.08999 * 113.61421 * 105.46363 * 21 20 19 36 36 H 1.09000 * 113.53240 * 270.80756 * 22 21 20 37 37 H 1.08999 * 113.66382 * 139.93313 * 22 21 20 38 38 H 1.08997 * 113.61623 * 220.08967 * 23 22 21 39 39 H 1.09008 * 113.69094 * 89.19714 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6531 -1.5885 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9435 0.8304 2.6034 8 14 2.3213 -1.1200 4.0081 9 1 3.8063 -1.1206 4.0083 10 1 1.8269 -0.4196 5.2205 11 1 1.8258 -2.5200 4.0080 12 6 2.0323 -0.7105 -1.2304 13 8 2.6451 -1.7515 -1.1218 14 7 1.8054 -0.1863 -2.4511 15 6 1.1626 1.1241 -2.5776 16 6 2.2338 2.2039 -2.7426 17 9 3.0736 2.2026 -1.6238 18 9 2.9874 1.9413 -3.8917 19 6 2.2017 -0.9268 -3.6515 20 6 1.0463 -1.8223 -4.1029 21 6 1.0174 -3.1908 -3.4020 22 6 0.6301 -3.7912 -4.7657 23 6 1.3302 -2.5826 -5.4091 24 1 -0.3633 0.3771 -0.9560 25 1 -0.3634 -1.0164 0.1514 26 1 -0.3634 0.6394 0.8045 27 1 0.7089 1.1616 3.4844 28 1 0.5082 1.1251 -3.4494 29 1 0.5754 1.3286 -1.6824 30 1 1.7554 3.1788 -2.8372 31 1 2.4488 -0.2237 -4.4470 32 1 3.0727 -1.5426 -3.4275 33 1 0.0851 -1.3084 -4.0970 34 1 1.9930 -3.5177 -3.0421 35 1 0.2358 -3.2784 -2.6473 36 1 -0.4455 -3.8167 -4.9403 37 1 1.1173 -4.7426 -4.9790 38 1 0.8007 -2.1801 -6.2726 39 1 2.3916 -2.7417 -5.5998 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597452702.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:11 Heat of formation + Delta-G solvation = -140.513859 kcal Electronic energy + Delta-G solvation = -22984.836086 eV Core-core repulsion = 19370.039650 eV Total energy + Delta-G solvation = -3614.796437 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 275.144 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.78861 -47.82605 -41.05144 -39.32495 -36.51741 -35.76814 -32.67345 -30.90797 -28.78933 -27.25731 -26.44041 -24.94860 -24.17572 -23.02321 -20.28713 -20.22765 -18.55714 -18.33984 -18.07215 -17.77813 -17.23641 -16.77470 -16.27822 -16.04536 -15.94357 -15.25511 -14.92639 -14.67681 -14.33510 -14.19914 -13.94264 -13.74260 -13.45550 -13.32493 -13.16105 -12.95310 -12.87511 -12.68066 -12.48831 -12.26884 -12.14052 -12.03289 -11.99515 -11.58067 -11.28619 -11.06522 -11.01515 -10.57539 -10.20714 -9.52102 -8.15115 -6.22879 1.38615 1.40021 1.48474 1.91831 2.09043 2.44665 3.05950 3.15831 3.48072 3.62009 3.68765 3.81686 3.85716 3.91325 4.02545 4.22713 4.46155 4.47486 4.56052 4.60818 4.73069 4.78618 4.86220 4.91247 4.93351 5.01013 5.08216 5.10563 5.13430 5.37451 5.50722 5.59911 5.70755 5.77640 5.95043 6.19775 6.55608 6.83603 7.41191 7.52324 8.91389 Molecular weight = 275.14amu Principal moments of inertia in cm(-1) A = 0.016837 B = 0.006801 C = 0.005360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.632449 B = 4115.950800 C = 5222.640064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.024 3.976 3 H 0.048 0.952 4 C -0.531 4.531 5 H 0.042 0.958 6 C 0.023 3.977 7 N -0.907 5.907 8 Si 0.949 3.051 9 H -0.280 1.280 10 H -0.271 1.271 11 H -0.278 1.278 12 C 0.525 3.475 13 O -0.578 6.578 14 N -0.616 5.616 15 C 0.043 3.957 16 C 0.233 3.767 17 F -0.226 7.226 18 F -0.215 7.215 19 C 0.122 3.878 20 C -0.121 4.121 21 C -0.144 4.144 22 C -0.132 4.132 23 C -0.117 4.117 24 H 0.063 0.937 25 H 0.017 0.983 26 H 0.070 0.930 27 H 0.265 0.735 28 H 0.146 0.854 29 H 0.122 0.878 30 H 0.167 0.833 31 H 0.100 0.900 32 H 0.050 0.950 33 H 0.102 0.898 34 H 0.055 0.945 35 H 0.039 0.961 36 H 0.091 0.909 37 H 0.069 0.931 38 H 0.091 0.909 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.442 2.744 -17.088 17.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.003 3.997 3 H 0.066 0.934 4 C -0.570 4.570 5 H 0.060 0.940 6 C -0.176 4.176 7 N -0.546 5.546 8 Si 0.775 3.225 9 H -0.205 1.205 10 H -0.196 1.196 11 H -0.204 1.204 12 C 0.316 3.684 13 O -0.457 6.457 14 N -0.349 5.349 15 C -0.081 4.081 16 C 0.179 3.821 17 F -0.207 7.207 18 F -0.196 7.196 19 C 0.000 4.000 20 C -0.141 4.141 21 C -0.181 4.181 22 C -0.170 4.170 23 C -0.155 4.155 24 H 0.081 0.919 25 H 0.036 0.964 26 H 0.089 0.911 27 H 0.074 0.926 28 H 0.164 0.836 29 H 0.140 0.860 30 H 0.184 0.816 31 H 0.118 0.882 32 H 0.069 0.931 33 H 0.120 0.880 34 H 0.074 0.926 35 H 0.057 0.943 36 H 0.110 0.890 37 H 0.088 0.912 38 H 0.110 0.890 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.151 2.296 -16.888 17.542 hybrid contribution 0.773 -0.599 1.401 1.708 sum -3.378 1.697 -15.487 15.942 Atomic orbital electron populations 1.21718 0.94939 1.00081 1.00997 1.18827 0.95168 0.96388 0.89323 0.93410 1.21249 1.31719 1.12531 0.91471 0.93988 1.25507 0.95259 0.95751 1.01085 1.69925 1.37134 1.23305 1.24281 0.85753 0.78570 0.78810 0.79331 1.20541 1.19587 1.20365 1.21640 0.76917 0.84451 0.85396 1.90487 1.41958 1.26320 1.86912 1.47946 1.61655 1.19575 1.05725 1.23358 0.94895 0.81172 1.08631 1.23168 0.84756 1.03790 0.70426 1.92993 1.75278 1.97980 1.54489 1.92914 1.79628 1.95973 1.51115 1.21599 0.96837 0.95288 0.86299 1.22971 0.99231 0.94515 0.97345 1.22916 1.00258 0.97936 0.97031 1.22839 1.01273 0.98194 0.94655 1.22798 1.01224 0.95522 0.95935 0.91863 0.96402 0.91079 0.92598 0.83640 0.85984 0.81596 0.88179 0.93115 0.88029 0.92636 0.94253 0.89043 0.91217 0.88998 0.90140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.35 8.33 71.98 0.60 -4.75 16 2 C 0.02 1.22 1.80 -12.29 -0.02 1.20 16 3 H 0.05 2.51 6.29 -2.39 -0.02 2.49 16 4 C -0.53 -31.61 8.36 25.60 0.21 -31.39 16 5 H 0.04 2.70 6.77 -2.91 -0.02 2.68 16 6 C 0.02 1.33 5.30 84.66 0.45 1.78 16 7 N -0.91 -51.00 11.42 21.45 0.25 -50.76 16 8 Si 0.95 45.98 29.54 68.60 2.03 48.00 16 9 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 10 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 11 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 12 C 0.52 24.62 6.78 87.66 0.59 25.21 16 13 O -0.58 -31.66 14.55 -3.03 -0.04 -31.70 16 14 N -0.62 -21.20 2.39 -821.81 -1.97 -23.16 16 15 C 0.04 1.06 5.04 86.38 0.44 1.50 16 16 C 0.23 5.62 5.60 71.98 0.40 6.02 16 17 F -0.23 -8.15 15.68 44.97 0.71 -7.45 16 18 F -0.21 -5.50 15.68 44.97 0.71 -4.80 16 19 C 0.12 3.62 5.06 86.38 0.44 4.05 16 20 C -0.12 -3.05 3.96 -10.27 -0.04 -3.09 16 21 C -0.14 -4.39 7.29 31.18 0.23 -4.17 16 22 C -0.13 -2.83 8.09 31.18 0.25 -2.58 16 23 C -0.12 -2.24 7.65 31.12 0.24 -2.01 16 24 H 0.06 2.18 5.40 -2.39 -0.01 2.16 16 25 H 0.02 0.81 8.12 -2.39 -0.02 0.80 16 26 H 0.07 3.44 6.35 -2.39 -0.02 3.42 16 27 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 28 H 0.15 2.18 8.12 -2.39 -0.02 2.16 16 29 H 0.12 3.29 4.09 -2.39 -0.01 3.28 16 30 H 0.17 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.10 2.43 6.70 -2.38 -0.02 2.41 16 32 H 0.05 1.83 7.09 -2.39 -0.02 1.81 16 33 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.05 2.03 7.79 -2.38 -0.02 2.01 16 35 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.08 1.56 8.10 -2.38 -0.02 1.54 16 Total: -1.00 -73.53 315.82 6.51 -67.02 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: 1.05 Total: 11.05 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: 3.79 Total: -8.22 kcal Atomic # 7 Polarization: -72.20 SS G_CDS: -1.72 Total: -73.92 kcal Atomic # 8 Polarization: -31.66 SS G_CDS: -0.04 Total: -31.70 kcal Atomic # 9 Polarization: -13.65 SS G_CDS: 1.41 Total: -12.24 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.00 kcal Total: -73.53 6.51 -67.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597452702.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.490 kcal (2) G-P(sol) polarization free energy of solvation -73.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds